Drosophila melanogaster
fruit fly, vinegar fly
Drosophila melanogaster is a species of fly (the taxonomic order Diptera) in the family Drosophilidae. Starting with Charles W. Woodworths proposal of the use of this species as a model organism, D. melanogaster continues to be widely used for biological research in genetics, physiology, microbial pathogenesis, and life history evolution. As of 2017, six Nobel prizes had been awarded for research using Drosophila.
Host Genome
Chromosome| Genome ID | Level | BUSCO Assessment |
|---|---|---|
| GCA_000001215.4 | Chromosome |
C:99.9%[S:99.3%,D:0.6%],F:0.0%,M:0.1%,n:1367
|
Download Genome Files
Related Symbionts
63 recordsSymbiont records associated with Drosophila melanogaster
| Classification | Function | Function Tags | Reference | |
|---|---|---|---|---|
|
Wolbachia
Pseudomonadota |
Bacteria
|
Wolbachia has been reported both to extend and shorten longevity; its lifespan-modulating effects are proposed to involve pathways like insulin/insul… |
lifespan modulation
|
|
|
Wolbachia
Pseudomonadota |
Bacteria
|
Wolbachia infection affects differential gene expression in Drosophila testis, upregulating genes involved in carbohydrate metabolism, lysosomal degr… |
immune priming
protein degradation
lipase
carbohydrate metabolism
|
|
|
Lactobacillus
Bacillota |
Bacteria
|
Lactobacillus may be able to ameliorate the pH of the acidic midgut region by releasing weak bases, and also has a complex relationship with physiolo… |
fertility
|
|
|
Acetobacter
Pseudomonadota |
Bacteria
|
Acetobacter may be able to ameliorate the pH of the acidic midgut region by releasing weak bases, and also has a complex relationship with physiologi… |
fertility
|
|
|
Wolbachia
Pseudomonadota |
Bacteria
|
Wolbachia upregulates the expression of Pale and Ddc, mediates the expression of dopamine-related genes, increases total sleep time, and decreases sl… |
other
|
|
|
Acetobacter
Pseudomonadota |
Bacteria
|
The existence of Acetobacter has a balancing effect on food ingestion when carbohydrate levels are high in warmer months, stabilizing fitness compone… |
carbohydrate metabolism
|
|
|
Wolbachia
Pseudomonadota |
Bacteria
|
A specific strain of Wolbachia was observed to reduce the initiation of aggressive encounters in Drosophila males, which may be achieved by influenci… |
other
|
|
|
Wolbachia
Pseudomonadota |
Bacteria
|
Wolbachia infection changes the expression of several genes associated with spermatogenesis, immunity (kenny), and metabolism (CG4988-RA) in the larv… |
immune priming
|
|
|
Listeria monocytogenes
Bacillota |
Bacteria
|
Listeria monocytogenes infection disrupts host energy metabolism, reduces antioxidant defense, and alters amino acid metabolism, accompanied by melan… |
immune priming
|
|
|
Wolbachia popcorn
Pseudomonadota |
Bacteria
|
Wolbachia popcorn begins massive proliferation in the adult, causing widespread degeneration of tissues (brain, retina, muscle), culminating in early… |
other
|
|
|
Spiroplasma poulsonii
Mycoplasmatota |
Bacteria
|
Spiroplasma poulsonii protects its host against parasitoid wasps and nematodes through the action of toxins from the Ribosome Inactivating Proteins f… |
natural enemy resistance
toxin production
|
|
|
Wolbachia
Pseudomonadota |
Bacteria
|
Wolbachia protects Drosophila melanogaster against two naturally occurring and virulent viral pathogens: La Jolla virus (LJV) and Newfield virus (NFV… |
antiviral activity
|
|
|
Wolbachia pipientis
Pseudomonadota |
Bacteria
|
Wolbachia pipientis increases the recombination rate observed across two genomic intervals and increases the efficacy of natural selection in hosts. |
other
|
|
|
Spiroplasma poulsonii
Mycoplasmatota |
Bacteria
|
Spiroplasma poulsonii supports the hypothesis that competition for host lipids underlies symbiont-mediated protection against parasitoid wasps. |
natural enemy resistance
|
|
|
Wolbachia
Pseudomonadota |
Bacteria
|
Wolbachia enhances nanos expression via the bacterial TomO protein in order to fuel germ stem cell maintenance in infected Drosophila females. |
fertility
|
|
|
Spiroplasma
Mycoplasmatota |
Bacteria
|
Spiroplasma causes neurodegenerative phenotypes and a reduced life span in old flies compared to uninfected Drosophila melanogaster controls. |
growth regulation
|
|
|
Spiroplasma poulsonii
Mycoplasmatota |
Bacteria
|
Spiroplasma poulsonii co-opts the yolk transport and uptake machinery to colonize the germ line and ensure efficient vertical transmission. |
other
|
|
|
Wolbachia
Pseudomonadota |
Bacteria
|
Wolbachia regulates the host's transcriptional response to viral infection and affects viral replication in Drosophila melanogaster. |
virus interaction
|
|
|
Lactiplantibacillus plantarum
Bacillota |
Bacteria
|
Lactiplantibacillus plantarum could effectively inhibit fungal spore germinations on the body surfaces of Drosophila melanogaster. |
antimicrobial activity
|
|
|
Photorhabdus luminescens
Pseudomonadota |
Bacteria
|
Photorhabdus luminescens produces toxin complex (Tc) toxins as major virulence factors against the host Drosophila melanogaster. |
toxin production
|
|
|
Bacteria
|
Gut bacteria (Metagenome data) are necessary for the nutritional needs and survival of the parasite of Drosophila melanogaster. |
nutrient provision
|
||
|
Bacteria
|
Gut bacteria (Metagenome data) are necessary for the nutritional needs and survival of the parasite of Drosophila melanogaster. |
nutrient provision
|
||
|
Saccharomyces cerevisiae
Ascomycota |
Fungi
|
Saccharomyces cerevisiae results in the development of larger ovaries and increased egg numbers in Drosophila melanogaster. |
fertility
|
|
|
Wolbachia pipientis
Pseudomonadota |
Bacteria
|
Wolbachia pipientis influences octopamine metabolism in Drosophila females, which is dependent on the symbiont genotype. |
other
|
|
|
Wolbachia wMelPop
Pseudomonadota |
Bacteria
|
The virulent Wolbachia wMelPop infection improves the learning and memory capacity of the host, Drosophila melanogaster. |
learning and memory capacity
|
|
|
Acetobacter malorum
Pseudomonadota |
Bacteria
|
Acetobacter malorum results in the development of larger ovaries and increased egg numbers in Drosophila melanogaster. |
fertility
|
|
|
Bacteria
|
Body-surface microbiotas (Amplicon data) can defend Drosophila melanogaster flies against fungal parasitic infections. |
antimicrobial activity
|
||
|
Spiroplasma
Mycoplasmatota |
Bacteria
|
The presence of Spiroplasma (together with Wolbachia) in D. melanogaster up-regulated certain immune-related genes. |
immune priming
|
|
|
Wolbachia
Pseudomonadota |
Bacteria
|
The presence of Wolbachia (together with Spiroplasma) in D. melanogaster up-regulated certain immune-related genes. |
immune priming
|
|
|
Lactobacillus plantarum FlyG1None.1.5
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG1None.1.5 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG1None.1.9
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG1None.1.9 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG2None.1.2
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG2None.1.2 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG2None.1.4
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG2None.1.4 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG2None.2.2
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG2None.2.2 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG2None.2.6
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG2None.2.6 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG11.1.2
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG11.1.2 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG11.1.6
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG11.1.6 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG11.2.6
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG11.2.6 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Spiroplasma poulsonii
Mycoplasmatota |
Bacteria
|
Spiroplasma poulsonii manipulates the host's reproduction by killing its male progeny at the embryonic stage. |
male killing
|
|
|
Lactobacillus plantarum FlyG2.1.8
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG2.1.8 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG3.1.8
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG3.1.8 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG7.1.6
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG7.1.6 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG8.1.1
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG8.1.1 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG8.1.2
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG8.1.2 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG9.1.4
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG9.1.4 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Lactobacillus plantarum FlyG9.2.5
Bacillota |
Bacteria
|
Lactobacillus plantarum FlyG9.2.5 increases its growth-promotion ability by adapting to the Drosophila diet. |
growth regulation
|
|
|
Accharomyces cerevisiae
Ascomycota |
Fungi
|
Accharomyces cerevisiae (Fungi) mediates Drosophila melanogaster attraction, oviposition, and development. |
fertility
growth regulation
developmental modulation
|
|
|
Spiroplasma poulsonii MSRO-H99
Mycoplasmatota |
Bacteria
|
Spiroplasma poulsonii MSRO-H99 expresses a protein, designated Spaid, which induces male killing. |
male killing
|
|
|
Spiroplasma poulsonii MSRO-SE
Mycoplasmatota |
Bacteria
|
Spiroplasma poulsonii MSRO-SE expresses a protein, designated Spaid, which induces male killing. |
male killing
|
|
|
Erwinia carotovora carotovora 15
Pseudomonadota |
Bacteria
|
Erwinia carotovora carotovora 15 decreases olfactory discrimination in Drosophila melanogaster. |
other
|
|
|
Wolbachia pipientis
Pseudomonadota |
Bacteria
|
Wolbachia pipientis increases the heat stress resistance of the host Drosophila melanogaster. |
temparature adaptation
|
|
|
Lactobacillus plantarum
Bacillota |
Bacteria
|
Lactobacillus plantarum has the potential to reduce IMI-induced susceptibility to infection. |
pesticide metabolization
|
|
|
Bacteria
|
Gut bacteria increase the chemotaxis response to odorants in Drosophila melanogaster larva. |
semiochemical biosynthesis
|
||
|
Bacteria
|
Gut bacteria reduce the memory of olfactory appetitive learning in Drosophila melanogaster. |
learning and memory capacity
|
||
|
Lactobacillus plantarum
Bacillota |
Bacteria
|
Lactobacillus plantarum may be beneficial in reducing in vivo Chlorpyrifos (CP) toxicity. |
pesticide metabolization
|
|
|
Wolbachia
Pseudomonadota |
Bacteria
|
Wolbachia strain wMel changes the composition of gut commensal bacteria in the fruit fly. |
other
|
|
|
Spiroplasma poulsonii MSRO_BK
Mycoplasmatota |
Bacteria
|
Spiroplasma poulsonii MSRO_BK is a male-killing Spiroplasma bacterium. |
male killing
|
|
|
Spiroplasma poulsonii MSRO
Mycoplasmatota |
Bacteria
|
Spiroplasma poulsonii MSRO is a male-killing Spiroplasma bacterium. |
male killing
|
|
|
Acetobacter indonesiensis
Pseudomonadota |
Bacteria
|
- |
||
|
Acetobacter oryzifermentans
Pseudomonadota |
Bacteria
|
- |
||
|
Lactiplantibacillus plantarum
Bacillota |
Bacteria
|
- |
||
|
Lactiplantibacillus plantarum
Bacillota |
Bacteria
|
- |
||
|
Streptomyces
Actinomycetota |
Bacteria
|
- |
Metagenome Information
0 recordsMetagenome sequencing data associated with Drosophila melanogaster
| Run | Platform | Location | Date | BioProject |
|---|---|---|---|---|
No metagenomes foundNo metagenome records associated with this host species. |
||||
Amplicon Information
63 recordsAmplicon sequencing data associated with Drosophila melanogaster
| Run | Classification | Platform | Location | Environment |
|---|---|---|---|---|
|
SRR5682895
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682894
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
DRR358050
AMPLICON |
16S
|
-
|
uncalculated
missing |
missing
missing |
|
DRR358051
AMPLICON |
16S
|
-
|
uncalculated
missing |
missing
missing |
|
SRR5682875
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682876
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682877
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682878
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682879
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682880
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682881
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682882
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682883
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682884
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682885
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682886
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682887
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682888
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682889
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682890
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682891
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682892
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR5682893
AMPLICON |
16S
|
-
|
Australia
|
-
|
|
SRR15332035
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Six days post eclosion |
|
SRR15332017
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Ten days post eclosion |
|
SRR15331991
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Six days post eclosion |
|
SRR15331993
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Six days post eclosion |
|
SRR15331995
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Two days post eclosion |
|
SRR15331997
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Two days post eclosion |
|
SRR15331999
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Six days post eclosion |
|
SRR15332001
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Six days post eclosion |
|
SRR15332003
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Two days post eclosion |
|
SRR15332005
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Two days post eclosion |
|
SRR15332007
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Two days post eclosion |
|
SRR15332009
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Two days post eclosion |
|
SRR15332011
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Two days post eclosion |
|
SRR15332013
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Ten days post eclosion |
|
SRR15332015
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Ten days post eclosion |
|
SRR15331989
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Six days post eclosion |
|
SRR15332019
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Ten days post eclosion |
|
SRR15332021
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Two days post eclosion |
|
SRR15332023
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Ten days post eclosion |
|
SRR15332025
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Ten days post eclosion |
|
SRR15332027
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Ten days post eclosion |
|
SRR15332029
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Six days post eclosion |
|
SRR15332031
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Six days post eclosion |
|
SRR15332033
AMPLICON |
16S
|
-
|
China
31.2 N 121.4 E |
Fruit fly body surface
Six days post eclosion |
|
SRR14350755
AMPLICON |
16S
|
-
|
Canada
68.87 N 93.13 W |
-
|
|
SRR14350756
AMPLICON |
16S
|
-
|
Canada
68.87 N 93.13 W |
-
|
|
SRR14350745
AMPLICON |
16S
|
-
|
Canada
68.87 N 93.13 W |
-
|
|
SRR14350746
AMPLICON |
16S
|
-
|
Canada
68.87 N 93.13 W |
-
|
|
SRR14350747
AMPLICON |
16S
|
-
|
Canada
68.87 N 93.13 W |
-
|
|
SRR14350748
AMPLICON |
16S
|
-
|
Canada
68.87 N 93.13 W |
-
|
|
SRR14350749
AMPLICON |
16S
|
-
|
Canada
68.87 N 93.13 W |
-
|
|
SRR14350750
AMPLICON |
16S
|
-
|
Canada
68.87 N 93.13 W |
-
|
|
SRR14350751
AMPLICON |
16S
|
-
|
Canada
68.87 N 93.13 W |
-
|
|
SRR14350752
AMPLICON |
16S
|
-
|
Canada
68.87 N 93.13 W |
-
|
|
SRR14350753
AMPLICON |
16S
|
-
|
Canada
68.87 N 93.13 W |
-
|
|
SRR14350754
AMPLICON |
16S
|
-
|
Canada
68.87 N 93.13 W |
-
|
|
SRR13089526
AMPLICON |
16S
|
-
|
China
30.3 N 120.2 E |
-
|
|
SRR13089525
AMPLICON |
16S
|
-
|
China
30.3 N 120.2 E |
-
|
|
SRR9587990
AMPLICON |
16S
|
-
|
China
30.3 N 120.2 E |
-
|
|
SRR9587989
AMPLICON |
16S
|
-
|
China
30.3 N 120.2 E |
-
|
Related Articles
39 recordsResearch articles related to Drosophila melanogaster
| Title | Authors | Journal | Year | DOI |
|---|---|---|---|---|
|
Hu, JC; Bi, R; Luo, YX ... Jia, YC; Mao, CX
|
INSECT SCIENCE
|
2024
|
10.1111/1744-7917.13370 | |
|
Chen, MY; Li, D; Wang, ZN ... Zhang, S; Wang, YF
|
Animal Behaviour
|
2024
|
10.1016/j.anbehav.2024.03.016 | |
|
Hong, S; Sun, YL; Chen, HM; Wang, CS
|
ISME JOURNAL
|
2023
|
10.1038/s41396-022-01323-7 | |
|
Bruner-Montero, G; Jiggins, FM
|
SCIENTIFIC REPORTS
|
2023
|
10.1038/s41598-023-35726-z | |
|
Korenskaia, AE; Shishkina, OD; Klimenko, AI ... Vasiliev, GV; Gruntenko, NE
|
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
|
2022
|
10.3390/ijms232416212 | |
|
Hong, S; Sun, YL; Sun, DP; Wang, CS
|
iScience
|
2022
|
10.1016/j.isci.2022.104408 | |
|
Masson, F; Rommelaere, S; Schüpfer, F; Boquete, JP; Lemaitre, B
|
Proceedings of the National Academy of Sciences
|
2022
|
10.1073/pnas.2208461119 | |
|
Xu, Y; Viswanatha, R; Sitsel, O ... Perrimon, N; Dong, M
|
NATURE
|
2022
|
10.1038/s41586-022-05250-7 | |
|
Maritan, E; Gallo, M; Srutkova, D ... Schwarzer, M; Martino, ME
|
BMC Biology
|
2022
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10.1186/s12915-022-01477-y | |
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Core Microbiome Composition
Core microbiome composition is derived from available metagenomic and amplicon sequencing data, calculated based on the relative abundance and coverage of symbionts across different samples. The representativeness of this analysis may vary depending on the number of available samples and should be considered as a reference guide. See calculation details in Help documentation