Ips typographus
European spruce bark beetle
Ips typographus is a species of beetle in the weevil subfamily Scolytinae, the bark beetles, and is found from Europe to Asia Minor and some parts of Africa.
Host Genome
Contig| Genome ID | Level | BUSCO Assessment |
|---|---|---|
| GCA_016097725.1 | Contig |
C:98.4%[S:93.3%,D:5.1%],F:0.7%,M:0.9%,n:1367
|
Download Genome Files
Related Symbionts
18 recordsSymbiont records associated with Ips typographus
| Classification | Function | Function Tags | Reference | |
|---|---|---|---|---|
|
Endoconidiophora polonica
Ascomycota |
Fungi
|
volatile compounds produced by Fungi may act as recognition signals for bark beetles to maintain specific microbial communities that might have impac… |
Chemical biosynthesis
|
|
|
Grosmannia europhioides
Ascomycota |
Fungi
|
volatile compounds produced by Fungi may act as recognition signals for bark beetles to maintain specific microbial communities that might have impac… |
Chemical biosynthesis
|
|
|
Grosmannia penicillata
Ascomycota |
Fungi
|
volatile compounds produced by Fungi may act as recognition signals for bark beetles to maintain specific microbial communities that might have impac… |
Chemical biosynthesis
|
|
|
Ophiostoma bicolor
Ascomycota |
Fungi
|
volatile compounds produced by Fungi may act as recognition signals for bark beetles to maintain specific microbial communities that might have impac… |
Chemical biosynthesis
|
|
|
Ophiostoma piceae
Ascomycota |
Fungi
|
volatile compounds produced by Fungi may act as recognition signals for bark beetles to maintain specific microbial communities that might have impac… |
Chemical biosynthesis
|
|
|
Grosmannia europhioides
Ascomycota |
Fungi
|
produced large amounts of 2-methyl-3-buten-2-ol (MB), the major component in the beetles' aggregation pheromone blend |
Chemical biosynthesis
|
|
|
Grosmannia penicillata
Ascomycota |
Fungi
|
produced large amounts of 2-methyl-3-buten-2-ol (MB), the major component in the beetles' aggregation pheromone blend |
Chemical biosynthesis
|
|
|
Endoconidiophora rufipennis
Ascomycota |
Fungi
|
Semiochemicals produced by symbiont can act as an anti-attractant for Ips typographus |
Chemical biosynthesis
|
|
|
Pseudomonas typographi
Pseudomonadota |
Bacteria
|
P. typographi aids I. typographi nutrition and resistance to fungal pathogens |
Antimicrobials
Nutrient provision
|
|
|
Grosmannia europhioides
Ascomycota |
Fungi
|
fungi have the ability to degrade conifer phenolics |
Plant secondary metabolites
|
|
|
Grosmannia penicillata
Ascomycota |
Fungi
|
fungi have the ability to degrade conifer phenolics |
Plant secondary metabolites
|
|
|
Cryptococcus sp.
Basidiomycota |
Fungi
|
has the potential of degrading plant cell wall |
Digestive enzymes
|
|
|
Kuraishia molischiana
Ascomycota |
Fungi
|
has the potential of degrading plant cell wall |
Digestive enzymes
|
|
|
Nakazawaea ambrosiae
Ascomycota |
Fungi
|
has the potential of degrading plant cell wall |
Digestive enzymes
|
|
|
Ogataea ramenticola
Ascomycota |
Fungi
|
has the potential of degrading plant cell wall |
Digestive enzymes
|
|
|
Wickerhamomyces bisporus
Ascomycota |
Fungi
|
has the potential of degrading plant cell wall |
Digestive enzymes
|
|
|
Cylindrobasidium ipidophilum
Basidiomycota |
Fungi
|
wood decay fungi |
||
|
Bacteria and Fungi
|
- |
Metagenome Information
0 recordsMetagenome sequencing data associated with Ips typographus
| Run | Platform | Location | Date | BioProject |
|---|---|---|---|---|
No metagenomes foundNo metagenome records associated with this host species. |
||||
Amplicon Information
186 recordsAmplicon sequencing data associated with Ips typographus
| Run | Classification | Platform | Location | Environment |
|---|---|---|---|---|
|
SRR27416538
AMPLICON |
16S
|
-
|
Germany
50.907861 N 11.658028 E |
-
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SRR27416669
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416668
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416667
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416666
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416664
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416663
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416662
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416661
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416660
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416659
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416658
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416657
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416656
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416655
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416652
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416651
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416650
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416649
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416648
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416647
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416646
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416645
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416644
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416610
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416609
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416608
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416607
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416606
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416605
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416604
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416603
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416602
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416601
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416599
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416598
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416597
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416596
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416595
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416593
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416592
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416591
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416590
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416588
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416587
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416586
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416585
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416584
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416544
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416543
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416541
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416540
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416539
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416581
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416548
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416549
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416550
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416551
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416552
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416554
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416555
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416556
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416557
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416558
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416559
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416560
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416561
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416562
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416563
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416579
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416580
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416582
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416583
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416715
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416716
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416717
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416718
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416719
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416720
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416721
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416722
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416723
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416724
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416727
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416728
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416729
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416730
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR11788154
AMPLICON |
ITS
|
-
|
Czech Republic
49.173 N 16.317 E |
Forest insect mycobiome
Scolytinae |
|
SRR11788149
AMPLICON |
ITS
|
-
|
Czech Republic
49.173 N 16.317 E |
Forest insect mycobiome
Scolytinae |
|
SRR11607982
AMPLICON |
16S
|
-
|
Czech Republic
49.173 N 16.317 E |
Forest insect microbiome
Scolytinae |
|
SRR11607981
AMPLICON |
16S
|
-
|
Czech Republic
49.173 N 16.317 E |
Forest insect microbiome
Scolytinae |
|
SRR11607987
AMPLICON |
16S
|
-
|
Czech Republic
49.173 N 16.317 E |
Forest insect microbiome
Scolytinae |
|
SRR11607986
AMPLICON |
16S
|
-
|
Czech Republic
49.173 N 16.317 E |
Forest insect microbiome
Scolytinae |
|
SRR11788148
AMPLICON |
ITS
|
-
|
Czech Republic
49.173 N 16.317 E |
Forest insect mycobiome
Scolytinae |
|
SRR11788150
AMPLICON |
ITS
|
-
|
Czech Republic
49.173 N 16.317 E |
Forest insect mycobiome
Scolytinae |
|
SRR11788151
AMPLICON |
ITS
|
-
|
Czech Republic
49.173 N 16.317 E |
Forest insect mycobiome
Scolytinae |
|
SRR11788153
AMPLICON |
ITS
|
-
|
Czech Republic
49.173 N 16.317 E |
Forest insect mycobiome
Scolytinae |
|
SRR11607984
AMPLICON |
16S
|
-
|
Czech Republic
49.173 N 16.317 E |
Forest insect microbiome
Scolytinae |
|
SRR11607983
AMPLICON |
16S
|
-
|
Czech Republic
49.173 N 16.317 E |
Forest insect microbiome
Scolytinae |
|
SRR27416553
AMPLICON |
16S
|
-
|
Germany
50.907861 N 11.658028 E |
-
|
|
SRR27416686
AMPLICON |
16S
|
-
|
Germany
50.907861 N 11.658028 E |
-
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SRR27416685
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416684
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416683
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416600
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416575
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416620
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
-
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SRR27416618
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416687
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416688
AMPLICON |
16S
|
-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416689
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416690
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416691
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416692
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
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SRR27416694
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
-
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SRR27416695
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
-
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SRR27416696
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
-
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SRR27416697
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
-
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SRR27416698
AMPLICON |
16S
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-
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Germany
50.907861 N 11.658028 E |
-
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SRR27416699
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
-
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SRR27416700
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
-
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SRR27416701
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
-
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SRR27416702
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
-
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SRR27416703
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
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SRR27416704
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
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SRR27416705
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
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SRR27416706
AMPLICON |
16S
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Germany
50.907861 N 11.658028 E |
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SRR27416707
AMPLICON |
16S
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Related Articles
8 recordsResearch articles related to Ips typographus
| Title | Authors | Journal | Year | DOI |
|---|---|---|---|---|
|
Baños-Quintana, AP; Gershenzon, J; Kaltenpoth, M
|
FRONTIERS IN MICROBIOLOGY
|
2024
|
10.3389/fmicb.2024.1367127 | |
|
Cheng, T; Veselská, T; Krízková, B ... Stadler, M; Kolarík, M
|
FRONTIERS IN MICROBIOLOGY
|
2023
|
10.3389/fmicb.2023.1108975 | |
|
Lindmark, M; Ganji, S; Wallin, EA; Schlyter, F; Unelius, CR
|
PLOS ONE
|
2023
|
10.1371/journal.pone.0283906 | |
|
Harrington, TC; Batzer, JC; McNew, DL
|
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
|
2021
|
10.1007/s10482-021-01541-7 | |
|
Peral-Aranega, E; Saati-Santamaría, Z; Kolarik, M; Rivas, R; García-Fraile, P
|
Insects
|
2020
|
10.3390/insects11090593 | |
|
Zhao, T; Kandasamy, D; Krokene, P ... Gershenzon, J; Hammerbacher, A
|
Fungal Ecology
|
2019
|
10.1016/j.funeco.2018.06.003 | |
|
Kandasamy, D; Gershenzon, J; Andersson, MN; Hammerbacher, A
|
ISME JOURNAL
|
2019
|
10.1038/s41396-019-0390-3 | |
|
Zhao, T; Axelsson, K; Krokene, P; Borg-Karlson, AK
|
JOURNAL OF CHEMICAL ECOLOGY
|
2015
|
10.1007/s10886-015-0617-3 |
Core Microbiome Composition
Core microbiome composition is derived from available metagenomic and amplicon sequencing data, calculated based on the relative abundance and coverage of symbionts across different samples. The representativeness of this analysis may vary depending on the number of available samples and should be considered as a reference guide. See calculation details in Help documentation