SRR27416666 - Ips typographus

Basic Information

Run: SRR27416666

Assay Type: AMPLICON

Biosample: SAMN39248348

Bytes: 51825106

Center Name: MAX PLANCK INSTITUTE FOR CHEMICAL ECOLOGY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1060889

Geographic Information

Country: Germany

Continent: Europe

Location Name: Germany: Jena, laboratory colony

Latitude/Longitude: 50.907861 N 11.658028 E

Sample Information

Host: Ips typographus

Isolation: -

Biosample Model: -

Collection Date: 2022-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR27416666
49.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 67
Aerobic_Chemoheterotrophy 26
Fermentation 21
Phototrophy 7
Intracellular_Parasites 6
Photosynthetic_Cyanobacteria 6
Oxygenic_Photoautotrophy 6
Photoautotrophy 6
Nitrate_Reduction 4
Methanol_Oxidation 2
Methylotrophy 2
Human_Gut 2
Human_Associated 2
Mammal_Gut 2
Animal_Parasites_Or_Symbionts 2
Predatory_Or_Exoparasitic 2
Dark_Sulfite_Oxidation 1
Cellulolysis 1
Dark_Sulfur_Oxidation 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Human_Pathogens_All 1
Aromatic_Compound_Degradation 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Photoheterotrophy 1
Ureolysis 1
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