SRR27416663 - Ips typographus

Basic Information

Run: SRR27416663

Assay Type: AMPLICON

Biosample: SAMN39248350

Bytes: 52103380

Center Name: MAX PLANCK INSTITUTE FOR CHEMICAL ECOLOGY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1060889

Geographic Information

Country: Germany

Continent: Europe

Location Name: Germany: Jena, laboratory colony

Latitude/Longitude: 50.907861 N 11.658028 E

Sample Information

Host: Ips typographus

Isolation: -

Biosample Model: -

Collection Date: 2022-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR27416663

49.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 53

Chemoheterotrophy

Aerobic_Chemoheterotrophy 24

Aerobic_Chemoheterotrophy

Fermentation 14

Fermentation

Phototrophy 5

Phototrophy

Photosynthetic_Cyanobacteria 4

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 4

Oxygenic_Photoautotrophy

Photoautotrophy 4

Photoautotrophy

Respiration_Of_Sulfur_Compounds 3

Respiration_Of_Sulfur_Compounds

Intracellular_Parasites 3

Intracellular_Parasites

Methanol_Oxidation 2

Methanol_Oxidation

Methylotrophy 2

Methylotrophy

Sulfate_Respiration 2

Sulfate_Respiration

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Human_Pathogens_All 2

Human_Pathogens_All

Human_Gut 2

Human_Gut

Human_Associated 2

Human_Associated

Mammal_Gut 2

Mammal_Gut

Animal_Parasites_Or_Symbionts 2

Animal_Parasites_Or_Symbionts

Ureolysis 2

Ureolysis

Sulfur_Respiration 1

Sulfur_Respiration

Dark_Sulfite_Oxidation 1

Dark_Sulfite_Oxidation

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Nitrogen_Fixation 1

Nitrogen_Fixation

Xylanolysis 1

Xylanolysis

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Diarrhea 1

Human_Pathogens_Diarrhea

Photoheterotrophy 1

Photoheterotrophy

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