SRR6014789 - Lasioglossum albipes

Basic Information

Run: SRR6014789

Assay Type: WGS

Bioproject: PRJNA402054

Biosample: SAMN07615186

Bytes: 62878492

Center Name: PRINCETON UNIVERSITY

Sequencing Information

Instrument: Illumina HiSeq 2000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: Switzerland

Continent: Europe

Location Name: Switzerland: Brassus

Latitude/Longitude: 46.635 N 6.267 E

Sample Information

Host: Lasioglossum albipes

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2014

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Wolbachia pipientis Species-level Match Host Order Match	RISB2342	Nasonia giraulti Order: Hymenoptera	Increase mate acceptance of infected females	1.04%	16.9
Wolbachia pipientis Species-level Match Host Order Match	RISB0255	Camponotus pennalicus Order: Hymenoptera	None	1.04%	16.0
Oecophyllibacter saccharovorans Species-level Match Host Order Match	RISB1194	Oecophylla smaragdina Order: Hymenoptera	None	0.03%	15.0
Formicincola oecophyllae Species-level Match Host Order Match	RISB0578	Oecophylla smaragdina Order: Hymenoptera	None	0.02%	15.0
Wolbachia pipientis Species-level Match	RISB0766	Aedes fluviatilis Order: Diptera	The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.	1.04%	11.0
Neokomagataea Host Order Match	RISB1560	Oecophylla smaragdina Order: Hymenoptera	may be related with the formic acid production	0.03%	11.0
Pantoea agglomerans Species-level Match	RISB2197	Termitidae Order: Blattodea	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.12%	10.1
Enterococcus sp. DIV0849a Species-level Match	RISB1393	Spodoptera frugiperda Order: Lepidoptera	microbe-mediated assaults by maize defenses on the fall armyworm on the insect digestive and immune system reduced growth and elevated mortality in these insects	0.17%	8.4
Enterococcus sp. 7F3_DIV0205 Species-level Match	RISB1393	Spodoptera frugiperda Order: Lepidoptera	microbe-mediated assaults by maize defenses on the fall armyworm on the insect digestive and immune system reduced growth and elevated mortality in these insects	0.16%	8.4
Enterococcus sp. 12C11_DIV0727 Species-level Match	RISB1393	Spodoptera frugiperda Order: Lepidoptera	microbe-mediated assaults by maize defenses on the fall armyworm on the insect digestive and immune system reduced growth and elevated mortality in these insects	0.10%	8.3
Pantoea agglomerans Species-level Match	RISB2579	Schistocerca gregaria Order: Orthoptera	produces an antifungal and antibacterial molecule serving as antimicrobial defense against gut pathogens	0.12%	7.2
Pantoea agglomerans Species-level Match	RISB0379	Frankliniella occidentalis Order: Thysanoptera	gut symbionts are required for their development	0.12%	6.1
Acetobacter	RISB1865	Drosophila melanogaster Order: Diptera	The bacterial cells may thus be able to ameliorate the pH of the acidic region, by the release of weak bases.Additionally, the bacteria have a complex relationship with physiological processes which may affect ionic homeostasis in the gut, such as nutrition and immune function	0.17%	5.2
Candidatus Kirkpatrickella diaphorinae Species-level Match	RISB0222	Diaphorina citri Order: Hemiptera	None	0.02%	5.0
Rahnella	RISB1623	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.03%	4.9
Acetobacter	RISB0961	Drosophila melanogaster Order: Diptera	The exist of Acetobacter had a balancing effect on food ingestion when carbohydrate levels were high in the warmer months, stabilizing fitness components of flies across the year.	0.17%	3.8
Shewanella	RISB1924	Anopheles gambiae Order: Diptera	may be related with mediating adaptation to different ecological niches or in shaping specific adult behaviors including mating	0.30%	2.8
Acetobacter	RISB0184	Drosophila melanogaster Order: Diptera	enhancing the brain levels of tyrosine decarboxylase 2 (Tdc2), which is an enzyme that synthesizes octopamine (OA)	0.17%	2.5
Rahnella	RISB1800	Dendroctonus valens Order: Coleoptera	could alleviate or compromise the antagonistic effects of fungi O. minus and L. procerum on RTB larval growth	0.03%	2.2
Rahnella	RISB0741	Dendroctonus ponderosae Order: Coleoptera	R. aquatilis decreased (−)-α-pinene (38%) and (+)-α-pinene (46%) by 40% and 45% (by GC-MS), respectively	0.03%	2.1