SRR6014741 - Lasioglossum albipes

Basic Information

Run: SRR6014741

Assay Type: WGS

Bioproject: PRJNA402054

Biosample: SAMN07615203

Bytes: 39568010

Center Name: PRINCETON UNIVERSITY

Sequencing Information

Instrument: Illumina HiSeq 2000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: Switzerland

Continent: Europe

Location Name: Switzerland: Brassus

Latitude/Longitude: 46.635 N 6.267 E

Sample Information

Host: Lasioglossum albipes

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2014

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Wolbachia pipientis Species-level Match Host Order Match	RISB2342	Nasonia giraulti Order: Hymenoptera	Increase mate acceptance of infected females	1.14%	17.0
Wolbachia pipientis Species-level Match Host Order Match	RISB0255	Camponotus pennalicus Order: Hymenoptera	None	1.14%	16.1
Wolbachia pipientis Species-level Match	RISB0766	Aedes fluviatilis Order: Diptera	The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.	1.14%	11.1
Sodalis praecaptivus Species-level Match	RISB0122	Nezara viridula Order: Hemiptera	plays an important role in interactions between insects and plants and could therefore be considered a valuable target for the development of sustainable pest control strategies.	0.75%	9.3
Sodalis praecaptivus Species-level Match	RISB1718	Sitophilus zeamais Order: Coleoptera	we investigated the role of a quorum sensing（QS ） system in S. praecaptivus and found that it negatively regulates a potent insect-killing phenotype	0.75%	8.7
Candidatus Sodalis pierantonius Species-level Match	RISB2035	Sitophilus oryzae Order: Coleoptera	endosymbiont dynamics parallels numerous transcriptional changes in weevil developing adults and affects several biological processes, including metabolism and development	0.26%	8.7
Shewanella	RISB1924	Anopheles gambiae Order: Diptera	may be related with mediating adaptation to different ecological niches or in shaping specific adult behaviors including mating	0.58%	3.1