SRR6014695 - Lasioglossum albipes

Basic Information

Run: SRR6014695

Assay Type: WGS

Bioproject: PRJNA402054

Biosample: SAMN07615255

Bytes: 112881229

Center Name: PRINCETON UNIVERSITY

Sequencing Information

Instrument: Illumina HiSeq 2000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Quality Control Information

Filter Percentage: 0.0005

QC Average Length: 89

Retained Reads: -

Geographic Information

Country: France

Continent: Europe

Location Name: France: Rimont

Latitude/Longitude: 43.017 N 1.282 E

Sample Information

Host: Lasioglossum albipes

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2014

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Spiroplasma sp. SV19 Species-level Match Host Order Match	RISB1353	Cephus cinctus Order: Hymenoptera	The bacterium also encoded biosynthetic pathways for essential vitamins B2, B3, and B9. We identified putative Spiroplasma virulence genes: cardiolipin and chitinase.	0.01%	18.3
Wolbachia pipientis Species-level Match Host Order Match	RISB2342	Nasonia giraulti Order: Hymenoptera	Increase mate acceptance of infected females	2.43%	18.3
Wolbachia pipientis Species-level Match Host Order Match	RISB0255	Camponotus pennalicus Order: Hymenoptera	None	2.43%	17.4
Microbacterium Host Order Match	RISB0084	Osmia cornifrons Order: Hymenoptera	In O. cornifrons larvae, Microbacterium could contribute to the balance and resiliency of the gut microbiome under stress conditions. In addition, Rhodococcus was found in O. cornifrons larvae and is known for its detoxification capabilities	0.02%	14.8
Wolbachia pipientis Species-level Match	RISB0766	Aedes fluviatilis Order: Diptera	The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.	2.43%	12.4
Rickettsia Host Order Match	RISB0257	Leptocybe invasa Order: Hymenoptera	Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa	0.09%	12.4
Rickettsia Host Order Match	RISB1970	Leptocybe invasa Order: Hymenoptera	Rickettsia as the causal agent of thelytokous parthenogenesis in L. invasa	0.09%	11.6
Rickettsia Host Order Match	RISB2475	Pnigalio soemius Order: Hymenoptera	cause parthenogenetic reproduction in the parasitoid wasp	0.09%	11.2
Corynebacterium Host Order Match	RISB1285	Aphidius colemani Order: Hymenoptera	Repelling parasitism	0.03%	10.4
Sodalis praecaptivus Species-level Match	RISB0122	Nezara viridula Order: Hemiptera	plays an important role in interactions between insects and plants and could therefore be considered a valuable target for the development of sustainable pest control strategies.	0.01%	8.6
Spiroplasma poulsonii Species-level Match	RISB1346	Drosophila melanogaster Order: Diptera	S. poulsonii protects its host against parasitoid wasps and nematodes by the action of toxins from the family of Ribosome Inactivating Proteins	0.12%	8.0
Sodalis praecaptivus Species-level Match	RISB1718	Sitophilus zeamais Order: Coleoptera	we investigated the role of a quorum sensing（QS ） system in S. praecaptivus and found that it negatively regulates a potent insect-killing phenotype	0.01%	8.0
Spiroplasma poulsonii Species-level Match	RISB2264	Drosophila melanogaster Order: Diptera	Spiroplasma coopts the yolk transport and uptake machinery to colonize the germ line and ensure efficient vertical transmission	0.12%	7.7
Microbacterium	RISB2274	Ostrinia nubilalis Order: Lepidoptera	extreme cellulolytic enzymes, at extreme (pH 13) conditions, exhibited cellulolytic properties	0.02%	1.9
Microbacterium	RISB1759	Spodoptera frugiperda Order: Lepidoptera	degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn	0.02%	1.8
Corynebacterium	RISB0363	Pagiophloeus tsushimanus Order: Coleoptera	terpenoid-degrading: the highest degradation rates of D-camphor, linalool, and eucalyptol	0.03%	1.8
Corynebacterium	RISB0531	Helicoverpa armigera Order: Lepidoptera	Corynebacterium sp. 2-TD, mediates the toxicity of the 2-tridecanone to H. armigera	0.03%	1.7
Agrobacterium	RISB0710	Fragariocoptes setiger Order: Trombidiformes	it appears to form a biologically important association with the mite	0.02%	1.4
Nocardioides	RISB1914	Hyles euphorbiae Order: Lepidoptera	able to degrade alkaloids and/or latex	0.06%	0.8
Chryseobacterium	RISB2092	Aedes aegypti Order: Diptera	axenic larvae cannot develop	0.02%	0.6
Chryseobacterium	RISB1874	Aedes aegypti Order: Diptera	gut microbiome	0.02%	0.3
Agrobacterium	RISB0650	Melanaphis bambusae Order: Hemiptera	None	0.02%	0.0
Chryseobacterium	RISB0015	Aedes aegypti Order: Diptera	None	0.02%	0.0