SRR6014621 - Lasioglossum albipes

Basic Information

Run: SRR6014621

Assay Type: WGS

Bioproject: PRJNA402054

Biosample: SAMN07615234

Bytes: 162254535

Center Name: PRINCETON UNIVERSITY

Sequencing Information

Instrument: Illumina HiSeq 2000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: France

Continent: Europe

Location Name: France: Rimont

Latitude/Longitude: 43.017 N 1.282 E

Sample Information

Host: Lasioglossum albipes

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2014

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Wolbachia pipientis Species-level Match Host Order Match	RISB2342	Nasonia giraulti Order: Hymenoptera	Increase mate acceptance of infected females	1.96%	17.8
Wolbachia pipientis Species-level Match Host Order Match	RISB0255	Camponotus pennalicus Order: Hymenoptera	None	1.96%	17.0
Stenotrophomonas maltophilia Species-level Match Host Order Match	RISB2004	Trichogramma chilonis Order: Hymenoptera	could significantly increase both female count	0.01%	15.9
Pseudomonas sp. KU26590 Species-level Match Host Order Match	RISB1564	Liometopum apiculatum Order: Hymenoptera	None	0.01%	15.0
Rickettsia Host Order Match	RISB0257	Leptocybe invasa Order: Hymenoptera	Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa	0.11%	12.4
Wolbachia pipientis Species-level Match	RISB0766	Aedes fluviatilis Order: Diptera	The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.	1.96%	12.0
Rickettsia Host Order Match	RISB1970	Leptocybe invasa Order: Hymenoptera	Rickettsia as the causal agent of thelytokous parthenogenesis in L. invasa	0.11%	11.6
Massilia Host Order Match	RISB2151	Osmia bicornis Order: Hymenoptera	may be essential to support Osmia larvae in their nutrient uptake	0.04%	11.3
Rickettsia Host Order Match	RISB2475	Pnigalio soemius Order: Hymenoptera	cause parthenogenetic reproduction in the parasitoid wasp	0.11%	11.3
Pantoea agglomerans Species-level Match	RISB2197	Termitidae Order: Blattodea	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.00%	10.0
Pseudomonas sp. KU26590 Species-level Match	RISB1622	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.01%	9.8
Stenotrophomonas maltophilia Species-level Match	RISB1122	Bombyx mori Order: Lepidoptera	facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.	0.01%	9.0
Sodalis praecaptivus Species-level Match	RISB0122	Nezara viridula Order: Hemiptera	plays an important role in interactions between insects and plants and could therefore be considered a valuable target for the development of sustainable pest control strategies.	0.01%	8.6
Candidatus Sodalis pierantonius Species-level Match	RISB2035	Sitophilus oryzae Order: Coleoptera	endosymbiont dynamics parallels numerous transcriptional changes in weevil developing adults and affects several biological processes, including metabolism and development	0.01%	8.4
Pseudomonas sp. KU26590 Species-level Match	RISB2224	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.01%	8.4
Sodalis praecaptivus Species-level Match	RISB1718	Sitophilus zeamais Order: Coleoptera	we investigated the role of a quorum sensing（QS ） system in S. praecaptivus and found that it negatively regulates a potent insect-killing phenotype	0.01%	8.0
Stenotrophomonas maltophilia Species-level Match	RISB1227	Delia antiqua Order: Diptera	six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids	0.01%	7.7
Pantoea agglomerans Species-level Match	RISB2579	Schistocerca gregaria Order: Orthoptera	produces an antifungal and antibacterial molecule serving as antimicrobial defense against gut pathogens	0.00%	7.1
Sphingomonas sp. PAMC26645 Species-level Match	RISB0134	Spodoptera frugiperda Order: Lepidoptera	provide a protective effect to against chlorantraniliprole stress to S. frugiperda	0.03%	6.7
Sphingomonas sp. HMP9 Species-level Match	RISB0134	Spodoptera frugiperda Order: Lepidoptera	provide a protective effect to against chlorantraniliprole stress to S. frugiperda	0.01%	6.7
Pantoea agglomerans Species-level Match	RISB0379	Frankliniella occidentalis Order: Thysanoptera	gut symbionts are required for their development	0.00%	6.0
Curtobacterium	RISB1910	Hyles euphorbiae Order: Lepidoptera	able to degrade alkaloids and/or latex	0.09%	0.9
Curtobacterium	RISB0900	Myzus persicae Order: Hemiptera	None	0.09%	0.1