SRR6014564 - Lasioglossum albipes

Basic Information

Run: SRR6014564

Assay Type: WGS

Bioproject: PRJNA402054

Biosample: SAMN07615222

Bytes: 174013189

Center Name: PRINCETON UNIVERSITY

Sequencing Information

Instrument: Illumina HiSeq 2000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: France

Continent: Europe

Location Name: France: Dordogne

Latitude/Longitude: 44.843 N 1.306 E

Sample Information

Host: Lasioglossum albipes

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2014

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Wolbachia pipientis Species-level Match Host Order Match	RISB2342	Nasonia giraulti Order: Hymenoptera	Increase mate acceptance of infected females	0.69%	16.6
Wolbachia pipientis Species-level Match Host Order Match	RISB0255	Camponotus pennalicus Order: Hymenoptera	None	0.69%	15.7
Oecophyllibacter saccharovorans Species-level Match Host Order Match	RISB1194	Oecophylla smaragdina Order: Hymenoptera	None	0.01%	15.0
Formicincola oecophyllae Species-level Match Host Order Match	RISB0578	Oecophylla smaragdina Order: Hymenoptera	None	0.00%	15.0
Pseudomonas Host Order Match	RISB0085	Osmia cornifrons Order: Hymenoptera	this bacterium has been shown to contribute to the synthesis of a defensive toxin in the beetle, Paederus fuscipes, and promotes arginine metabolism under in vitro conditions	0.04%	13.5
Bacillus Host Order Match	RISB0639	Formica Order: Hymenoptera	exhibited abilities in catabolizing sugars (sucrose, trehalose, melezitose and raffinose) known to be constituents of hemipteran honeydew	0.01%	12.8
Bacillus Host Order Match	RISB0529	Apis cerana Order: Hymenoptera	LAB produce organic acids, known as anti-microbial metabolites, inhibiting the growth of spoilage and pathogenic microorganisms	0.01%	12.6
Bacillus Host Order Match	RISB2159	Osmia bicornis Order: Hymenoptera	inhibit the growth of Ascosphaera spp. and Paenibacillus [64] and may thus have important roles in honey-bee immune defense.	0.01%	12.5
Pseudomonas Host Order Match	RISB2003	Trichogramma chilonis Order: Hymenoptera	could significantly increase both female count	0.04%	11.0
Neokomagataea Host Order Match	RISB1560	Oecophylla smaragdina Order: Hymenoptera	may be related with the formic acid production	0.01%	10.9
Wolbachia pipientis Species-level Match	RISB0766	Aedes fluviatilis Order: Diptera	The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.	0.69%	10.7
Klebsiella pneumoniae Species-level Match	RISB2185	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.06%	10.1
Pseudomonas Host Order Match	RISB1564	Liometopum apiculatum Order: Hymenoptera	None	0.04%	10.0
Pantoea agglomerans Species-level Match	RISB2197	Termitidae Order: Blattodea	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.01%	10.0
Spiroplasma poulsonii Species-level Match	RISB1346	Drosophila melanogaster Order: Diptera	S. poulsonii protects its host against parasitoid wasps and nematodes by the action of toxins from the family of Ribosome Inactivating Proteins	0.02%	7.9
Spiroplasma poulsonii Species-level Match	RISB2264	Drosophila melanogaster Order: Diptera	Spiroplasma coopts the yolk transport and uptake machinery to colonize the germ line and ensure efficient vertical transmission	0.02%	7.6
Spiroplasma poulsonii Species-level Match	RISB1928	Drosophila melanogaster Order: Diptera	supporting the hypothesis that competition for host lipids underlies S. poulsonii-mediated protection against parasitoid wasps	0.02%	7.5
Pantoea agglomerans Species-level Match	RISB2579	Schistocerca gregaria Order: Orthoptera	produces an antifungal and antibacterial molecule serving as antimicrobial defense against gut pathogens	0.01%	7.1
Klebsiella pneumoniae Species-level Match	RISB2459	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.06%	6.1
Pantoea agglomerans Species-level Match	RISB0379	Frankliniella occidentalis Order: Thysanoptera	gut symbionts are required for their development	0.01%	6.0
Klebsiella pneumoniae Species-level Match	RISB1994	Diatraea saccharalis Order: Lepidoptera	possess cellulose degrading activity	0.06%	5.8
Rickettsia sp. MEAM1 (Bemisia tabaci) Species-level Match	RISB0704	Aphis craccivora Order: Hemiptera	facultative symbiont	0.06%	5.5
Staphylococcus epidermidis Species-level Match	RISB1070	Oryctes rhinoceros Order: Coleoptera	gut microbe	0.01%	5.2
Rickettsia bellii Species-level Match	RISB1897	Bemisia tabaci Order: Hemiptera	None	0.04%	5.0
Rickettsia massiliae Species-level Match	RISB1904	Bemisia tabaci Order: Hemiptera	None	0.01%	5.0
Candidatus Kirkpatrickella diaphorinae Species-level Match	RISB0222	Diaphorina citri Order: Hemiptera	None	0.01%	5.0
Gluconobacter	RISB0016	Aedes aegypti Order: Diptera	Gluconobacter might increase the susceptibility of Ae. aegypti to CHIKV infection.	0.02%	1.7
Gluconobacter	RISB1882	Drosophila suzukii Order: Diptera	produce volatile substances that attract female D. suzukii	0.02%	1.2
Gluconobacter	RISB0876	Drosophila suzukii Order: Diptera	None	0.02%	0.0