SRR6014528 - Lasioglossum albipes

Basic Information

Run: SRR6014528

Assay Type: WGS

Bioproject: PRJNA402054

Biosample: SAMN07615219

Bytes: 90730466

Center Name: PRINCETON UNIVERSITY

Sequencing Information

Instrument: Illumina HiSeq 2000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: France

Continent: Europe

Location Name: France: Dordogne

Latitude/Longitude: 44.843 N 1.306 E

Sample Information

Host: Lasioglossum albipes

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2014

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Wolbachia pipientis Species-level Match Host Order Match	RISB2342	Nasonia giraulti Order: Hymenoptera	Increase mate acceptance of infected females	0.76%	16.6
Wolbachia pipientis Species-level Match Host Order Match	RISB0255	Camponotus pennalicus Order: Hymenoptera	None	0.76%	15.8
Pseudomonas Host Order Match	RISB0085	Osmia cornifrons Order: Hymenoptera	this bacterium has been shown to contribute to the synthesis of a defensive toxin in the beetle, Paederus fuscipes, and promotes arginine metabolism under in vitro conditions	0.09%	13.6
Pseudomonas Host Order Match	RISB2003	Trichogramma chilonis Order: Hymenoptera	could significantly increase both female count	0.09%	11.0
Neokomagataea Host Order Match	RISB1560	Oecophylla smaragdina Order: Hymenoptera	may be related with the formic acid production	0.02%	10.9
Wolbachia pipientis Species-level Match	RISB0766	Aedes fluviatilis Order: Diptera	The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.	0.76%	10.8
Pseudomonas Host Order Match	RISB1564	Liometopum apiculatum Order: Hymenoptera	None	0.09%	10.1
Pantoea agglomerans Species-level Match	RISB2197	Termitidae Order: Blattodea	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.04%	10.0
Pantoea agglomerans Species-level Match	RISB2579	Schistocerca gregaria Order: Orthoptera	produces an antifungal and antibacterial molecule serving as antimicrobial defense against gut pathogens	0.04%	7.1
Sphingomonas sp. PAMC26645 Species-level Match	RISB0134	Spodoptera frugiperda Order: Lepidoptera	provide a protective effect to against chlorantraniliprole stress to S. frugiperda	0.02%	6.7
Pantoea agglomerans Species-level Match	RISB0379	Frankliniella occidentalis Order: Thysanoptera	gut symbionts are required for their development	0.04%	6.0
Asaia	RISB0854	Anopheles stephensi Order: Diptera	Two complete operons encoding cytochrome bo3-type ubiquinol terminal oxidases (cyoABCD-1 and cyoABCD-2) were found in most Asaia genomes, possibly offering alternative terminal oxidases and allowing the flexible transition of respiratory pathways. Genes involved in the production of 2,3-butandiol and inositol have been found in Asaia sp. W12, possibly contributing to biofilm formation and stress tolerance.	0.88%	5.9
Rickettsia sp. MEAM1 (Bemisia tabaci) Species-level Match	RISB0704	Aphis craccivora Order: Hemiptera	facultative symbiont	0.06%	5.5
Acetobacter	RISB1865	Drosophila melanogaster Order: Diptera	The bacterial cells may thus be able to ameliorate the pH of the acidic region, by the release of weak bases.Additionally, the bacteria have a complex relationship with physiological processes which may affect ionic homeostasis in the gut, such as nutrition and immune function	0.05%	5.1
Rickettsia bellii Species-level Match	RISB1897	Bemisia tabaci Order: Hemiptera	None	0.04%	5.0
Erwinia aphidicola Species-level Match	RISB1705	Phlebotomus papatasi Order: Diptera	None	0.04%	5.0
Candidatus Kirkpatrickella diaphorinae Species-level Match	RISB0222	Diaphorina citri Order: Hemiptera	None	0.01%	5.0
Asaia	RISB0014	Aedes aegypti Order: Diptera	The bacterium Asaia is considered a highly promising candidate for arboviral control in Aedes mosquitoes.Asaia could play a role in inhibiting CHIKV within Ae. aegypti.	0.88%	4.2
Asaia	RISB1315	Sogatella furcifera Order: Hemiptera	infected WBPH were of shorter nymphal duration and heavier adult weight. Asaia sp. plays a role in improving WBPH fitness through involvement in host’s nutrient supply	0.88%	4.2
Acetobacter	RISB0961	Drosophila melanogaster Order: Diptera	The exist of Acetobacter had a balancing effect on food ingestion when carbohydrate levels were high in the warmer months, stabilizing fitness components of flies across the year.	0.05%	3.6
Acetobacter	RISB0184	Drosophila melanogaster Order: Diptera	enhancing the brain levels of tyrosine decarboxylase 2 (Tdc2), which is an enzyme that synthesizes octopamine (OA)	0.05%	2.3
Gluconobacter	RISB0016	Aedes aegypti Order: Diptera	Gluconobacter might increase the susceptibility of Ae. aegypti to CHIKV infection.	0.11%	1.8
Gluconobacter	RISB1882	Drosophila suzukii Order: Diptera	produce volatile substances that attract female D. suzukii	0.11%	1.3
Komagataeibacter	RISB1883	Drosophila suzukii Order: Diptera	produce volatile substances that attract female D. suzukii	0.04%	1.2
Achromobacter	RISB1869	Aedes aegypti Order: Diptera	gut microbiome	0.03%	0.3
Gluconobacter	RISB0876	Drosophila suzukii Order: Diptera	None	0.11%	0.1
Achromobacter	RISB0383	Aphis gossypii Order: Hemiptera	None	0.03%	0.0