SRR5940794 - Chrysomya megacephala

Basic Information

Run: SRR5940794

Assay Type: WGS

Bioproject: PRJNA385554

Biosample: SAMN07135677

Bytes: 2228668116

Center Name: NANYANG TECHNOLOGICAL UNIVERSITY

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: Brazil

Continent: South America

Location Name: Brazil: Campinas

Latitude/Longitude: 22.8272 S 47.0636 W

Sample Information

Host: Chrysomya megacephala

Isolation: hospital

Biosample Model: Metagenome or environmental

Collection Date: 2012-05-16

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Ignatzschineria
RISB0562
Chrysomya megacephala
Order: Diptera
Ignatzschineria indica is a Gram-negative bacterium commonly associated with maggot infestation and myiasis, a probable marker for myiasis diagnosis
0.02%
33.0
Wolbachia pipientis
RISB0766
Aedes fluviatilis
Order: Diptera
The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.
1.23%
21.2
Lactococcus lactis
RISB0131
Ceratitis capitata
Order: Diptera
The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The  colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.
0.13%
20.1
Klebsiella michiganensis
RISB1052
Bactrocera dorsalis
Order: Diptera
K. michiganensis BD177 has the strain-specific ability to provide three essential amino acids (phenylalanine, tryptophan and methionine) and two vitamins B (folate and riboflavin) to B. dorsalis
0.69%
19.6
Wolbachia pipientis
RISB1515
Drosophila melanogaster
Order: Diptera
increases the recombination rate observed across two genomic intervals and increases the efficacy of natural selection in hosts
1.23%
18.8
Citrobacter freundii
RISB1221
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.89%
18.6
Morganella morganii
RISB0772
Delia antiqua
Order: Diptera
showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.24%
18.5
Klebsiella michiganensis
RISB1131
Bactrocera dorsalis
Order: Diptera
promotes host resistance to low-temperature stress by stimulating its arginine and proline metabolism pathway in adult Bactrocera dorsalis
0.69%
18.5
Arthrobacter sp. YC-RL1
RISB0769
Delia antiqua
Order: Diptera
showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.04%
18.3
Paenibacillus sp. BIHB 4019
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.04%
18.3
Wolbachia pipientis
RISB1354
Drosophila melanogaster
Order: Diptera
Wolbachia influence octopamine metabolism in the Drosophila females, which is by the symbiont genotype
1.23%
18.3
Morganella morganii
RISB0008
Phormia regina
Order: Diptera
deterred oviposition by female stable flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria
0.24%
18.2
Lactococcus lactis
RISB0113
Bactrocera dorsalis
Order: Diptera
increase the resistance of B. dorsalis to β-cypermethrin by regulating cytochrome P450 (P450) enzymes and α-glutathione S-transferase (GST) activities
0.13%
18.1
Enterococcus faecalis
RISB1411
Bactrocera dorsalis
Order: Diptera
female Bactrocera dorsalis fed Enterococcus faecalis and Klebsiella oxytoca enriched diets lived longer but had lower fecundity
0.12%
17.7
Providencia rettgeri
RISB1001
Anastrepha obliqua
Order: Diptera
improve the sexual competitiveness of males
1.78%
17.6
Psychrobacter sp. van23A
RISB1773
Calliphoridae
Order: Diptera
it shows physiological adaptation to survival in warmer temperatures and has been previously associated with food spoilage
0.07%
17.5
Psychrobacter sp. WB2
RISB1773
Calliphoridae
Order: Diptera
it shows physiological adaptation to survival in warmer temperatures and has been previously associated with food spoilage
0.06%
17.5
Psychrobacter sp. DAB_AL43B
RISB1773
Calliphoridae
Order: Diptera
it shows physiological adaptation to survival in warmer temperatures and has been previously associated with food spoilage
0.02%
17.5
Providencia rettgeri
RISB1169
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
1.78%
17.3
Citrobacter freundii
RISB1396
Delia antiqua
Order: Diptera
suppressed Beauveria bassiana conidia germination and hyphal growth
0.89%
17.2
Morganella morganii
RISB0611
Bactrocera dorsalis
Order: Diptera
may hydrolysing nitrogenous waste and providing metabolizable nitrogen for B. dorsalis
0.24%
17.0
Citrobacter freundii
RISB1162
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.89%
16.5
Providencia sp. R33
RISB1574
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.53%
16.3
Enterococcus faecalis
RISB0095
Bactrocera minax
Order: Diptera
egrade phenols in unripe citrus in B. minax larvae
0.12%
16.1
Bacillus thuringiensis
RISB0820
Simulium tani
Order: Diptera
show resistance to some antibiotics
0.31%
16.0
Klebsiella pneumoniae
RISB1771
Muscidae
Order: Diptera
None
0.98%
16.0
Enterobacter asburiae
RISB1165
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.32%
15.9
Lactococcus lactis
RISB1167
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.13%
15.7
Escherichia coli
RISB1769
Calliphoridae
Order: Diptera
None
0.65%
15.7
Bacillus cereus
RISB1872
Aedes aegypti
Order: Diptera
gut microbiome
0.35%
15.6
Acinetobacter sp. ESL0695
RISB2083
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.07%
15.6
Chryseobacterium sp. POL2
RISB2092
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.05%
15.6
Paenibacillus sp. BIHB 4019
RISB2098
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.04%
15.6
Enterobacter hormaechei
RISB1331
Zeugodacus cucurbitae
Order: Diptera
None
0.59%
15.6
Buchnera aphidicola
RISB0051
Episyrphus balteatus
Order: Diptera
None
0.48%
15.5
Bacillus cereus
RISB1701
Phlebotomus papatasi
Order: Diptera
None
0.35%
15.4
Staphylococcus hominis
RISB1881
Aedes aegypti
Order: Diptera
gut microbiome
0.03%
15.3
Spiroplasma
RISB1796
Drosophila neotestacea
Order: Diptera
when parasitized by the nematode Howardula aoronymphium, Spiroplasma encodes a ribosome-inactivating protein (RIP) related to Shiga-like toxins from enterohemorrhagic Escherichia coli and that Howardula ribosomal RNA (rRNA) is depurinated during Spiroplasma-mediated protection of D. neotestacea
0.07%
15.1
Spiroplasma
RISB1926
Anopheles gambiae
Order: Diptera
may have reproductive interactions with their mosquito hosts,either providing an indirect fitness advantage to females by inducing male killing or by directly protecting the host against natural pathogens
0.07%
14.2
Spiroplasma
RISB2026
Drosophila hydei
Order: Diptera
Spiroplasma protect their host against parasitoid attack. The Spiroplasma-conferred protection is partial and flies surviving a wasp attack have reduced adult longevity and fecundity
0.07%
13.7
Comamonas
RISB2021
Bactrocera dorsalis
Order: Diptera
This group in the immature stages may be helping the insects to cope with oxidative stress by supplementing available oxygen.
0.15%
12.7
Raoultella
RISB1575
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.48%
11.2
Aeromonas
RISB2086
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.32%
10.9
Myroides
RISB0626
Musca altica
Order: Diptera
None
0.85%
10.9
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
0.48%
10.5
Alcaligenes
RISB1871
Aedes aegypti
Order: Diptera
gut microbiome
0.16%
10.4
Comamonas
RISB1875
Aedes aegypti
Order: Diptera
gut microbiome
0.15%
10.4
Peribacillus
RISB1877
Aedes aegypti
Order: Diptera
gut microbiome
0.07%
10.4
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
0.48%
10.2
Vagococcus
RISB0042
Aldrichina grahami
Order: Diptera
None
0.22%
10.2
Comamonas
RISB2020
Bactrocera dorsalis
Order: Diptera
None
0.15%
10.2
Microbacterium arborescens
RISB2191
Scirpophaga incertulas
Order: Lepidoptera
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.12%
10.1
Pectobacterium
RISB1772
Muscidae
Order: Diptera
None
0.05%
10.1
Apibacter
RISB1138
Musca domestica
Order: Diptera
None
0.02%
10.0
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
0.65%
10.0
Serratia liquefaciens
RISB1624
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.10%
9.9
Acinetobacter sp. ESL0695
RISB0730
Curculio chinensis
Order: Coleoptera
Acinetobacter sp. in C. chinensis enriched after treating with saponin, and when incubating bacteria with saponin for 72 h, saponin content significantly decreased from 4.054 to 1.867 mg/mL (by 16S rRNA metagenome sequencing and HPLC)
0.07%
9.8
Clostridium sp. DL-VIII
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.05%
9.3
Streptomyces sp. NBC_01324
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.26%
9.2
Streptomyces sp. P3
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.12%
9.1
Mammaliicoccus sciuri
RISB0075
Bombyx mori
Order: Lepidoptera
could produce a secreted chitinolytic lysozyme (termed Msp1) to damage fungal cell walls,completely inhibit the spore germination of fungal entomopathogens Metarhizium robertsii and Beauveria bassiana
0.05%
9.1
Staphylococcus xylosus
RISB2497
Anticarsia gemmatalis
Order: Lepidoptera
allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean
0.03%
9.0
Streptomyces sp. SJL17-4
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.03%
9.0
Acinetobacter pittii
RISB1977
Blattella germanica
Order: Blattodea
gut microbiota contributes to production of VCAs that act as fecal aggregation agents and that cockroaches discriminate among the complex odors that emanate from a diverse microbial community
0.09%
8.9
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
0.65%
8.4
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
0.18%
8.1
Proteus vulgaris
RISB0001
Leptinotarsa decemlineata
Order: Coleoptera
produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation
0.14%
7.8
Enterobacter asburiae
RISB1700
Plutella xylostella
Order: Lepidoptera
play an important role in the breakdown of plant cell walls, detoxification of plant phenolics, and synthesis of amino acids.
0.32%
7.8
Enterococcus faecalis
RISB0497
Cryptolestes ferrugineus
Order: Coleoptera
bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.
0.12%
7.7
Serratia liquefaciens
RISB1801
Dendroctonus valens
Order: Coleoptera
could alleviate or compromise the antagonistic effects of fungi O. minus and L. procerum on RTB larval growth
0.10%
7.3
Microbacterium arborescens
RISB1759
Spodoptera frugiperda
Order: Lepidoptera
degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn
0.12%
6.9
Staphylococcus xylosus
RISB2247
Anticarsia gemmatalis
Order: Lepidoptera
mitigation of the negative effects of proteinase inhibitors produced by the host plant
0.03%
6.8
Serratia liquefaciens
RISB2461
Bombyx mori
Order: Lepidoptera
able to utilize three polysaccharides including CMcellulose, xylan and pectin
0.10%
6.6
Paenibacillus sp. BIHB 4019
RISB0813
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-9 oxidation pathway
0.04%
6.4
Microbacterium arborescens
RISB1761
Spodoptera frugiperda
Order: Lepidoptera
may influence the metabolization of pesticides in insects
0.12%
6.3
Proteus vulgaris
RISB2460
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.14%
6.1
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
0.18%
5.9
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
0.18%
5.6
Flavobacterium johnsoniae
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
0.11%
5.1
Candidatus Erwinia haradaeae
RISB1632
Lachninae
Order: Hemiptera
None
0.04%
5.0
Candidatus Karelsulcia muelleri
RISB1591
Philaenus spumarius
Order: Hemiptera
None
0.02%
5.0
Treponema
RISB2377
termite
Order: Blattodea
when grown together, two termite-gut Treponema species influence each other's gene expression in a far more comprehensive and nuanced manner than might have been predicted based on the results of previous studies on the respective pure cultures
0.05%
4.9
Apibacter
RISB0603
Apis cerana
Order: Hymenoptera
The acquisition of genes for the degradation of the toxic monosaccharides potentiates Apibacter with the ability to utilize the pollen hydrolysis products, at the same time enabling monosaccharide detoxification for the host
0.02%
4.5
Raoultella
RISB2226
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.48%
3.8
Pectobacterium
RISB1889
Pseudococcus longispinus
Order: Hemiptera
a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids
0.05%
3.4
Candidatus Blochmanniella
RISB2542
Camponotus
Order: Hymenoptera
Blochmannia provide essential amino acids to its host,Camponotus floridanus, and that it may also play a role in nitrogen recycling via its functional urease
0.02%
3.2
Candidatus Blochmanniella
RISB1827
Camponotus floridanus
Order: Hymenoptera
a modulation of immune gene expression which may facilitate tolerance towards the endosymbionts and thus may contribute to their transovarial transmission
0.02%
3.1
Candidatus Blochmanniella
RISB2448
Camponotus floridanus
Order: Hymenoptera
nutritional contribution of the bacteria to host metabolism by production of essential amino acids and urease-mediated nitrogen recycling
0.02%
2.8
Streptococcus
RISB2625
Galleria mellonella
Order: Lepidoptera
suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme
0.48%
2.5
Bacteroides
RISB0256
Leptocybe invasa
Order: Hymenoptera
Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa
0.09%
2.4
Bacteroides
RISB0090
Hyphantria cunea
Order: Lepidoptera
enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.
0.09%
2.2
Bacteroides
RISB1183
Oryzaephilus surinamensis
Order: Coleoptera
supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host
0.09%
2.1
Streptococcus
RISB2624
Reticulitermes flavipes
Order: Blattodea
can be broken down into substances such as carbon dioxide, ammonia and acetic acid
0.48%
2.1
Raoultella
RISB1672
Spodoptera frugiperda
Order: Lepidoptera
downregulated POX but upregulated trypsin PI in this plant species
0.48%
1.8
Bradyrhizobium
RISB0135
Coccinella septempunctata
Order: Coleoptera
be commonly found in plant roots and they all have nitrogen fixation abilities
0.16%
1.7
Streptococcus
RISB2604
Homona magnanima
Order: Lepidoptera
influence the growth of Bacillus thuringiensis in the larvae
0.48%
1.7
Nostoc
RISB0812
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-18 oxidation pathway
0.10%
1.5
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.17%
1.5
Glutamicibacter
RISB0606
Phthorimaea operculella
Order: Lepidoptera
could degrade the major toxic α-solanine and α-chaconine in potatoes
0.08%
1.4
Candidatus Mesenet
RISB1785
Brontispa longissima
Order: Coleoptera
induced complete Cytoplasmic incompatibility (CI) (100% mortality)
0.02%
1.3
Aeromonas
RISB2456
Bombyx mori
Order: Lepidoptera
able to utilize the CMcellulose and xylan
0.32%
1.1
Paraclostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.08%
1.1
Pectobacterium
RISB0798
Pseudoregma bambucicola
Order: Hemiptera
may help P. bambucicola feed on the stalks of bamboo
0.05%
1.1
Lysinibacillus
RISB1416
Psammotermes hypostoma
Order: Blattodea
isolates showed significant cellulolytic activity
0.08%
1.1
Curtobacterium
RISB1910
Hyles euphorbiae
Order: Lepidoptera
able to degrade alkaloids and/or latex
0.18%
0.9
Aeromonas
RISB1145
Tenebrio molitor
Order: Coleoptera
degrading plastics
0.32%
0.7
Priestia
RISB0839
Helicoverpa armigera
Order: Lepidoptera
producing amylase
0.18%
0.5
Lysinibacillus
RISB1066
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.08%
0.3
Curtobacterium
RISB0900
Myzus persicae
Order: Hemiptera
None
0.18%
0.2
Weeksella
RISB1265
Rheumatobates bergrothi
Order: Hemiptera
None
0.09%
0.1
Glutamicibacter
RISB0438
Helicoverpa armigera
Order: Lepidoptera
None
0.08%
0.1
Treponema
RISB0169
Reticulitermes flaviceps
Order: Blattodea
None
0.05%
0.1
Legionella
RISB1687
Polyplax serrata
Order: Phthiraptera
None
0.05%
0.1
Helicobacter
RISB0662
Melanaphis bambusae
Order: Hemiptera
None
0.04%
0.0
Apibacter
RISB0604
Apis cerana
Order: Hymenoptera
None
0.02%
0.0

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