SRR5940780 - Musca domestica

Basic Information

Run: SRR5940780

Assay Type: WGS

Bioproject: PRJNA385554

Biosample: SAMN07135717

Bytes: 1395525339

Center Name: NANYANG TECHNOLOGICAL UNIVERSITY

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Quality Control Information

Filter Percentage: 0.0321

QC Average Length: 147

Retained Reads: -

Geographic Information

Country: Brazil

Continent: South America

Location Name: Brazil: Jaguariuna

Latitude/Longitude: 22.6847 S 46.9261 W

Sample Information

Host: Musca domestica

Isolation: Farm - pasture

Biosample Model: Metagenome or environmental

Collection Date: 2015-01-21

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Citrobacter freundii
RISB1221
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
5.93%
23.6
Citrobacter freundii
RISB1396
Delia antiqua
Order: Diptera
suppressed Beauveria bassiana conidia germination and hyphal growth
5.93%
22.3
Psychrobacter sp. YP14
RISB1773
Calliphoridae
Order: Diptera
it shows physiological adaptation to survival in warmer temperatures and has been previously associated with food spoilage
4.58%
22.0
Citrobacter freundii
RISB1162
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
5.93%
21.5
Myroides
RISB0626
Musca altica
Order: Diptera
None
10.72%
20.7
Lactococcus lactis
RISB0131
Ceratitis capitata
Order: Diptera
The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The  colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.
0.48%
20.5
Enterobacter sp. Colony194
RISB0893
Bactrocera dorsalis
Order: Diptera
be beneficial, with some quality control indices, such as adult size, pupal weight, survival rate under stress and nutritionally rich conditions, and mating competitiveness, being significantly increased, while slight nonsignificant increases in emergence rate and flight ability were observed
0.11%
20.1
Wolbachia
RISB0766
Aedes fluviatilis
Order: Diptera
The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.
4.75%
19.8
Wolbachia
RISB0779
Drosophila melanogaster
Order: Diptera
Wolbachia infection affects differential gene expression in Drosophila testis.Genes involved in carbohydrate metabolism, lysosomal degradation, proteolysis, lipid metabolism, and immune response were upregulated in the presence of Wolbachia
4.75%
19.6
Wolbachia
RISB1408
Anastrepha fraterculus
Order: Diptera
Wolbachia is the only known reproductive symbiont present in these morphotypes. Wolbachia reduced the ability for embryonic development in crosses involving cured females and infected males within each morphotype (uni-directional CI).
4.75%
19.4
Enterobacter sp. Colony194
RISB1338
Ceratitis capitata
Order: Diptera
Enterobacter sp. AA26 dry biomass can fully replace the brewer’s yeast as a protein source in medfly larval diet without any effect on the productivity and the biological quality of reared medfly of VIENNA 8 GSS
0.11%
19.3
Providencia rettgeri
RISB1001
Anastrepha obliqua
Order: Diptera
improve the sexual competitiveness of males
3.12%
19.0
Providencia rettgeri
RISB1169
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
3.12%
18.7
Morganella morganii
RISB0772
Delia antiqua
Order: Diptera
showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.26%
18.5
Acinetobacter guillouiae
RISB0768
Delia antiqua
Order: Diptera
showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.24%
18.5
Lactococcus lactis
RISB0113
Bactrocera dorsalis
Order: Diptera
increase the resistance of B. dorsalis to β-cypermethrin by regulating cytochrome P450 (P450) enzymes and α-glutathione S-transferase (GST) activities
0.48%
18.5
Enterococcus casseliflavus
RISB0112
Bactrocera dorsalis
Order: Diptera
increase the resistance of B. dorsalis to β-cypermethrin by regulating cytochrome P450 (P450) enzymes and α-glutathione S-transferase (GST) activities
0.36%
18.4
Morganella morganii
RISB0008
Phormia regina
Order: Diptera
deterred oviposition by female stable flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria
0.26%
18.2
Bacillus thuringiensis
RISB0820
Simulium tani
Order: Diptera
show resistance to some antibiotics
2.50%
18.2
Stenotrophomonas maltophilia
RISB1227
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.41%
18.1
Klebsiella pneumoniae
RISB1771
Muscidae
Order: Diptera
None
2.95%
18.0
Enterococcus faecalis
RISB1411
Bactrocera dorsalis
Order: Diptera
female Bactrocera dorsalis fed Enterococcus faecalis and Klebsiella oxytoca enriched diets lived longer but had lower fecundity
0.21%
17.8
Psychrobacter sp. AntiMn-1
RISB1773
Calliphoridae
Order: Diptera
it shows physiological adaptation to survival in warmer temperatures and has been previously associated with food spoilage
0.18%
17.6
Psychrobacter sp. van23A
RISB1773
Calliphoridae
Order: Diptera
it shows physiological adaptation to survival in warmer temperatures and has been previously associated with food spoilage
0.09%
17.5
Stenotrophomonas maltophilia
RISB1141
Hermetia illucens
Order: Diptera
enhance the insect growth performance when reared on an unbalanced nutritionally poor diet
0.41%
17.2
Morganella morganii
RISB0611
Bactrocera dorsalis
Order: Diptera
may hydrolysing nitrogenous waste and providing metabolizable nitrogen for B. dorsalis
0.26%
17.0
Enterobacter sp. Colony194
RISB1311
Ceratitis capitata
Order: Diptera
it was shown to have positive effects in rearing efficiency when used as larval probiotics
0.11%
16.9
Bacillus sp. Y1
RISB0791
Anopheles barbirostris
Order: Diptera
without this midgut flora showed delayed development to become adult
0.51%
16.9
Stenotrophomonas maltophilia
RISB1401
Delia antiqua
Order: Diptera
suppressed Beauveria bassiana conidia germination and hyphal growth
0.41%
16.8
Escherichia coli
RISB1769
Calliphoridae
Order: Diptera
None
1.69%
16.7
Pantoea dispersa
RISB1413
Bactrocera dorsalis
Order: Diptera
causing female Bactrocera dorsalis laid more eggs but had shorter lifespan
0.12%
16.6
Klebsiella sp. CTHL.F3a
RISB0917
Aedes aegypti
Order: Diptera
could impact larval development (e.g., spermidine)
0.42%
16.4
Enterococcus faecalis
RISB0095
Bactrocera minax
Order: Diptera
egrade phenols in unripe citrus in B. minax larvae
0.21%
16.2
Bacillus cereus
RISB1872
Aedes aegypti
Order: Diptera
gut microbiome
0.86%
16.1
Klebsiella sp. CTHL.F3a
RISB1573
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.42%
16.1
Lactococcus lactis
RISB1167
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.48%
16.0
Acinetobacter sp. YWS30-1
RISB2083
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.26%
15.8
Acinetobacter sp. MYb10
RISB2083
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.19%
15.8
Buchnera aphidicola
RISB0051
Episyrphus balteatus
Order: Diptera
None
0.69%
15.7
Chryseobacterium sp. StRB126
RISB2092
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.09%
15.7
Providencia alcalifaciens
RISB1168
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.07%
15.6
Chryseobacterium sp. POL2
RISB2092
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.06%
15.6
Staphylococcus hominis
RISB1881
Aedes aegypti
Order: Diptera
gut microbiome
0.06%
15.3
Spiroplasma
RISB1796
Drosophila neotestacea
Order: Diptera
when parasitized by the nematode Howardula aoronymphium, Spiroplasma encodes a ribosome-inactivating protein (RIP) related to Shiga-like toxins from enterohemorrhagic Escherichia coli and that Howardula ribosomal RNA (rRNA) is depurinated during Spiroplasma-mediated protection of D. neotestacea
0.17%
15.2
Candidatus Cardinium
RISB1439
Lutzomyia evansi
Order: Diptera
‘Candidatus Cardinium’ is a recently described bacterium from the Bacteroidetes group involved in diverse reproduction alterations of its arthropod hosts (including cytoplasmic incompatibility, parthenogenesis, and feminization) similar to Wolbachia
0.13%
15.1
Spiroplasma
RISB1926
Anopheles gambiae
Order: Diptera
may have reproductive interactions with their mosquito hosts,either providing an indirect fitness advantage to females by inducing male killing or by directly protecting the host against natural pathogens
0.17%
14.3
Spiroplasma
RISB2026
Drosophila hydei
Order: Diptera
Spiroplasma protect their host against parasitoid attack. The Spiroplasma-conferred protection is partial and flies surviving a wasp attack have reduced adult longevity and fecundity
0.17%
13.8
Comamonas
RISB2021
Bactrocera dorsalis
Order: Diptera
This group in the immature stages may be helping the insects to cope with oxidative stress by supplementing available oxygen.
0.38%
12.9
Shewanella
RISB1924
Anopheles gambiae
Order: Diptera
may be related with mediating adaptation to different ecological niches or in shaping specific adult behaviors including mating
0.11%
12.7
Vagococcus
RISB0042
Aldrichina grahami
Order: Diptera
None
1.76%
11.8
Aeromonas
RISB2086
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.96%
11.5
Dysgonomonas
RISB1235
Hermetia illucens
Order: Diptera
provides the tools for degrading of a broad range of substrates
0.25%
11.5
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
1.69%
11.0
Rickettsia
RISB1273
Culicoides impunctatus
Order: Diptera
possible symbiont-virus interactions
0.09%
10.8
Streptomyces sp. T12
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
1.78%
10.7
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
0.69%
10.7
Comamonas
RISB1875
Aedes aegypti
Order: Diptera
gut microbiome
0.38%
10.7
Streptomyces sp. NBC_01324
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
1.53%
10.5
Streptomyces sp. T12
RISB2334
Sirex noctilio
Order: Hymenoptera
degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide
1.78%
10.5
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
0.69%
10.5
Pseudomonas sp. CIP-10
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.59%
10.4
Peribacillus
RISB1877
Aedes aegypti
Order: Diptera
gut microbiome
0.13%
10.4
Comamonas
RISB2020
Bactrocera dorsalis
Order: Diptera
None
0.38%
10.4
Serratia liquefaciens
RISB1624
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.41%
10.2
Rickettsia
RISB0588
Culicoides impunctatus
Order: Diptera
None
0.09%
10.1
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
1.69%
9.4
Clostridium sp. DL-VIII
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.11%
9.3
Mammaliicoccus sciuri
RISB0075
Bombyx mori
Order: Lepidoptera
could produce a secreted chitinolytic lysozyme (termed Msp1) to damage fungal cell walls,completely inhibit the spore germination of fungal entomopathogens Metarhizium robertsii and Beauveria bassiana
0.16%
9.2
Pseudomonas sp. CIP-10
RISB2224
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.59%
8.9
Weissella cibaria
RISB1982
Blattella germanica
Order: Blattodea
gut microbiota contributes to production of VCAs that act as fecal aggregation agents and that cockroaches discriminate among the complex odors that emanate from a diverse microbial community
0.11%
8.9
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
0.30%
8.2
Weissella cibaria
RISB0641
Formica
Order: Hymenoptera
exhibited abilities in catabolizing sugars (sucrose, trehalose, melezitose and raffinose) known to be constituents of hemipteran honeydew
0.11%
7.9
Proteus vulgaris
RISB0001
Leptinotarsa decemlineata
Order: Coleoptera
produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation
0.12%
7.8
Serratia liquefaciens
RISB1801
Dendroctonus valens
Order: Coleoptera
could alleviate or compromise the antagonistic effects of fungi O. minus and L. procerum on RTB larval growth
0.41%
7.6
Carnobacterium maltaromaticum
RISB1693
Plutella xylostella
Order: Lepidoptera
play an important role in the breakdown of plant cell walls, detoxification of plant phenolics, and synthesis of amino acids.
0.08%
7.6
Pseudomonas sp. CIP-10
RISB0700
Nilaparvata lugens
Order: Hemiptera
Pseudomonas sp. composition and abundance correlated with BPH survivability
0.59%
7.1
Pantoea dispersa
RISB0182
Spodoptera frugiperda
Order: Lepidoptera
detoxify benzoxazinoids (secondary metabolites produced by maize) and promote caterpillar growth
0.12%
7.0
Leclercia adecarboxylata
RISB1757
Spodoptera frugiperda
Order: Lepidoptera
degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn
0.21%
7.0
Serratia liquefaciens
RISB2461
Bombyx mori
Order: Lepidoptera
able to utilize three polysaccharides including CMcellulose, xylan and pectin
0.41%
7.0
Carnobacterium maltaromaticum
RISB1692
Plutella xylostella
Order: Lepidoptera
participate in the synthesis of host lacking amino acids histidine and threonine
0.08%
6.7
Leclercia adecarboxylata
RISB1758
Spodoptera frugiperda
Order: Lepidoptera
may influence the metabolization of pesticides in insects
0.21%
6.4
Lysinibacillus fusiformis
RISB1417
Psammotermes hypostoma
Order: Blattodea
isolates showed significant cellulolytic activity
0.29%
6.3
Proteus vulgaris
RISB2460
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.12%
6.1
Pantoea dispersa
RISB0381
Thrips tabaci
Order: Thysanoptera
gut symbionts are required for their development
0.12%
6.1
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
0.30%
6.0
Carnobacterium maltaromaticum
RISB1691
Plutella xylostella
Order: Lepidoptera
activity of cellulose and hemicellulose
0.08%
5.9
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
0.30%
5.7
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
0.60%
5.6
Lysinibacillus fusiformis
RISB1066
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.29%
5.5
Treponema
RISB2377
termite
Order: Blattodea
when grown together, two termite-gut Treponema species influence each other's gene expression in a far more comprehensive and nuanced manner than might have been predicted based on the results of previous studies on the respective pure cultures
0.48%
5.4
Staphylococcus epidermidis
RISB1070
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.12%
5.3
Flavobacterium johnsoniae
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
0.31%
5.3
Staphylococcus hominis
RISB1071
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.06%
5.3
Candidatus Cardinium
RISB0223
Bemisia tabaci
Order: Hemiptera
Cardinium could inhibit the defense response of the host plant and decrease the detoxification metabolism ability of the host whitefly, decrease the expression of detoxification metabolism genes, especially the uridine 5'-diphospho-glucuronyltransferase and P450 genes,
0.13%
5.1
Francisella
RISB1907
Bombyx mori
Order: Lepidoptera
After infection with F. tularensis, the induction of melanization and nodulation, which are immune responses to bacterial infection, were inhibited in silkworms. Pre-inoculation of silkworms with F. tularensis enhanced the expression of antimicrobial peptides and resistance to infection by pathogenic bacteria.
0.11%
5.1
Rickettsia
RISB0940
Bemisia tabaci
Order: Hemiptera
Rickettsia can be transmitted into plants via whitefly feeding and remain alive within the cotton plants for at least 2 weeks.Then the persistence of Rickettsia and its induced defense responses in cotton plants can increase the fitness of whitefly and, by this, Rickettsia may increase its infection and spread within its whitefly host
0.09%
5.1
Candidatus Erwinia haradaeae
RISB1632
Lachninae
Order: Hemiptera
None
0.09%
5.1
Candidatus Megaera polyxenophila
RISB0587
Multiple species
Order: None
None
0.07%
5.1
Gilliamella
RISB0102
Apis mellifera
Order: Hymenoptera
Gilliamella apicola carries the gene for the desaturase FADS2, which is able to metabolize polyunsaturated fatty acids from pollen and synthesize endocannabinoid, a lipogenic neuroactive substance, thereby modulating reward learning and memory in honeybees.
0.07%
5.1
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
2.54%
3.9
Rhizobium
RISB0135
Coccinella septempunctata
Order: Coleoptera
be commonly found in plant roots and they all have nitrogen fixation abilities
2.20%
3.8
Bacteroides
RISB0256
Leptocybe invasa
Order: Hymenoptera
Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa
0.50%
2.8
Streptococcus
RISB2625
Galleria mellonella
Order: Lepidoptera
suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme
0.61%
2.6
Bacteroides
RISB0090
Hyphantria cunea
Order: Lepidoptera
enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.
0.50%
2.6
Bacteroides
RISB1183
Oryzaephilus surinamensis
Order: Coleoptera
supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host
0.50%
2.5
Candidatus Cardinium
RISB2290
Sogatella furcifera
Order: Hemiptera
dual infection with Cardinium and Wolbachia induced strong cytoplasmic incompatibility (CI) in a single host
0.13%
2.3
Streptococcus
RISB2624
Reticulitermes flavipes
Order: Blattodea
can be broken down into substances such as carbon dioxide, ammonia and acetic acid
0.61%
2.3
Corynebacterium
RISB0363
Pagiophloeus tsushimanus
Order: Coleoptera
terpenoid-degrading: the highest degradation rates of D-camphor, linalool, and eucalyptol
0.38%
2.2
Corynebacterium
RISB0531
Helicoverpa armigera
Order: Lepidoptera
Corynebacterium sp. 2-TD, mediates the toxicity of the 2-tridecanone to H. armigera
0.38%
2.0
Streptococcus
RISB2604
Homona magnanima
Order: Lepidoptera
influence the growth of Bacillus thuringiensis in the larvae
0.61%
1.8
Aeromonas
RISB2456
Bombyx mori
Order: Lepidoptera
able to utilize the CMcellulose and xylan
0.96%
1.8
Halomonas
RISB1808
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.42%
1.7
Aeromonas
RISB1145
Tenebrio molitor
Order: Coleoptera
degrading plastics
0.96%
1.3
Paraclostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.18%
1.2
Corynebacterium
RISB2360
Bombyx mori
Order: Lepidoptera
producing lipase in a gut environment
0.38%
1.1
Neokomagataea
RISB1560
Oecophylla smaragdina
Order: Hymenoptera
may be related with the formic acid production
0.18%
1.1
Cronobacter
RISB0247
Tenebrio molitor
Order: Coleoptera
may be indirectly involved in the digestion of PE
0.07%
1.1
Priestia
RISB0839
Helicoverpa armigera
Order: Lepidoptera
producing amylase
0.34%
0.7
Treponema
RISB0169
Reticulitermes flaviceps
Order: Blattodea
None
0.48%
0.5
Halomonas
RISB1374
Bemisia tabaci
Order: Hemiptera
None
0.42%
0.4
Gilliamella
RISB0620
Spodoptera frugiperda
Order: Lepidoptera
degrade amygdalin
0.07%
0.4
Dysgonomonas
RISB1481
Brachinus elongatulus
Order: Coleoptera
None
0.25%
0.3
Legionella
RISB1687
Polyplax serrata
Order: Phthiraptera
None
0.19%
0.2
Neisseria
RISB0512
Plutella xylostella
Order: Lepidoptera
None
0.15%
0.2
Helicobacter
RISB0662
Melanaphis bambusae
Order: Hemiptera
None
0.14%
0.1
Gilliamella
RISB1945
Apis cerana
Order: Hymenoptera
None
0.07%
0.1

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Taxonomic Analysis Files

Kraken Report

Detailed taxonomic classification

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Krona HTML

Interactive taxonomic visualization

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Bracken Results

Species abundance estimation

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Assembly & Gene Prediction

Assembled Contigs

MEGAHIT assembly results

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Predicted Genes

Gene sequences (FASTA)

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Gene Annotation

GFF format annotation

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Genome Binning

MetaBAT2 Bins

Compressed genome bins

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Bin Information

Quality metrics and statistics

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5940780
1.3 GB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

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