SRR5940720 - Musca domestica

Basic Information

Run: SRR5940720

Assay Type: WGS

Bioproject: PRJNA385554

Biosample: SAMN07135742

Bytes: 3080389761

Center Name: NANYANG TECHNOLOGICAL UNIVERSITY

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: Brazil

Continent: South America

Location Name: Brazil: Campinas

Latitude/Longitude: 22.8272 S 47.0636 W

Sample Information

Host: Musca domestica

Isolation: hospital

Biosample Model: Metagenome or environmental

Collection Date: 2012

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Klebsiella oxytoca
RISB1139
Musca domestica
Order: Diptera
It is associated to newly laid housefly eggs, where it is deposited by the female, and has a role in oviposition as well as protection against potential pathogens
0.05%
38.3
Apibacter
RISB1138
Musca domestica
Order: Diptera
None
0.06%
30.1
Klebsiella michiganensis
RISB1052
Bactrocera dorsalis
Order: Diptera
K. michiganensis BD177 has the strain-specific ability to provide three essential amino acids (phenylalanine, tryptophan and methionine) and two vitamins B (folate and riboflavin) to B. dorsalis
2.41%
21.3
Klebsiella michiganensis
RISB1131
Bactrocera dorsalis
Order: Diptera
promotes host resistance to low-temperature stress by stimulating its arginine and proline metabolism pathway in adult Bactrocera dorsalis
2.41%
20.2
Psychrobacter sp. WY6
RISB1773
Calliphoridae
Order: Diptera
it shows physiological adaptation to survival in warmer temperatures and has been previously associated with food spoilage
2.19%
19.6
Psychrobacter sp. van23A
RISB1773
Calliphoridae
Order: Diptera
it shows physiological adaptation to survival in warmer temperatures and has been previously associated with food spoilage
1.80%
19.2
Wolbachia
RISB0766
Aedes fluviatilis
Order: Diptera
The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.
3.96%
19.0
Psychrobacter sp. WB2
RISB1773
Calliphoridae
Order: Diptera
it shows physiological adaptation to survival in warmer temperatures and has been previously associated with food spoilage
1.51%
19.0
Wolbachia
RISB0779
Drosophila melanogaster
Order: Diptera
Wolbachia infection affects differential gene expression in Drosophila testis.Genes involved in carbohydrate metabolism, lysosomal degradation, proteolysis, lipid metabolism, and immune response were upregulated in the presence of Wolbachia
3.96%
18.8
Serratia marcescens
RISB1291
Aedes aegypti
Order: Diptera
facilitates arboviral infection through a secreted protein named SmEnhancin, which digests membrane-bound mucins on the mosquito gut epithelia, thereby enhancing viral dissemination.
0.08%
18.7
Wolbachia
RISB1408
Anastrepha fraterculus
Order: Diptera
Wolbachia is the only known reproductive symbiont present in these morphotypes. Wolbachia reduced the ability for embryonic development in crosses involving cured females and infected males within each morphotype (uni-directional CI).
3.96%
18.6
Paenibacillus sp. FSL W8-0194
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.05%
18.3
Stenotrophomonas maltophilia
RISB1227
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.23%
17.9
Citrobacter freundii
RISB1221
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.13%
17.8
Serratia marcescens
RISB0009
Phormia regina
Order: Diptera
prompted oviposition by flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria
0.08%
17.8
Serratia plymuthica
RISB1225
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.03%
17.7
Enterococcus faecalis
RISB1411
Bactrocera dorsalis
Order: Diptera
female Bactrocera dorsalis fed Enterococcus faecalis and Klebsiella oxytoca enriched diets lived longer but had lower fecundity
0.08%
17.6
Stenotrophomonas maltophilia
RISB1141
Hermetia illucens
Order: Diptera
enhance the insect growth performance when reared on an unbalanced nutritionally poor diet
0.23%
17.0
Enterobacter cloacae
RISB1414
Bactrocera dorsalis
Order: Diptera
causing female Bactrocera dorsalis laid more eggs but had shorter lifespan
0.15%
16.6
Stenotrophomonas maltophilia
RISB1401
Delia antiqua
Order: Diptera
suppressed Beauveria bassiana conidia germination and hyphal growth
0.23%
16.6
Enterobacter asburiae
RISB1165
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.92%
16.5
Citrobacter freundii
RISB1396
Delia antiqua
Order: Diptera
suppressed Beauveria bassiana conidia germination and hyphal growth
0.13%
16.5
Bacillus sp. LJBS17
RISB0791
Anopheles barbirostris
Order: Diptera
without this midgut flora showed delayed development to become adult
0.08%
16.4
Bacillus sp. Y1
RISB0791
Anopheles barbirostris
Order: Diptera
without this midgut flora showed delayed development to become adult
0.02%
16.4
Enterococcus faecalis
RISB0095
Bactrocera minax
Order: Diptera
egrade phenols in unripe citrus in B. minax larvae
0.08%
16.1
Enterobacter hormaechei
RISB1331
Zeugodacus cucurbitae
Order: Diptera
None
1.02%
16.0
Escherichia coli
RISB1769
Calliphoridae
Order: Diptera
None
0.93%
15.9
Providencia rettgeri
RISB1001
Anastrepha obliqua
Order: Diptera
improve the sexual competitiveness of males
0.04%
15.9
Bacillus thuringiensis
RISB0820
Simulium tani
Order: Diptera
show resistance to some antibiotics
0.15%
15.9
Aeromonas sp. ASNIH5
RISB2086
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.27%
15.8
Aeromonas sp. 19NY04SH05-1
RISB2086
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.18%
15.7
Aeromonas sp. FDAARGOS 1418
RISB2086
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.15%
15.7
Acinetobacter sp. SWBY1
RISB2083
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.15%
15.7
Citrobacter freundii
RISB1162
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.13%
15.7
Chryseobacterium sp. POL2
RISB2092
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.11%
15.7
Chryseobacterium sp. StRB126
RISB2092
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.08%
15.6
Paenibacillus sp. FSL W8-0194
RISB2098
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.05%
15.6
Chryseobacterium sp. SNU WT5
RISB2092
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.05%
15.6
Providencia rettgeri
RISB1169
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.04%
15.6
Acinetobacter sp. GSS19
RISB2083
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.03%
15.6
Buchnera aphidicola
RISB0051
Episyrphus balteatus
Order: Diptera
None
0.16%
15.2
Pantoea sp. SOD02
RISB1708
Phlebotomus papatasi
Order: Diptera
None
0.07%
15.1
Candidatus Cardinium
RISB1439
Lutzomyia evansi
Order: Diptera
‘Candidatus Cardinium’ is a recently described bacterium from the Bacteroidetes group involved in diverse reproduction alterations of its arthropod hosts (including cytoplasmic incompatibility, parthenogenesis, and feminization) similar to Wolbachia
0.02%
15.0
Shewanella
RISB1924
Anopheles gambiae
Order: Diptera
may be related with mediating adaptation to different ecological niches or in shaping specific adult behaviors including mating
0.10%
12.6
Raoultella
RISB1575
Bactrocera tau
Order: Diptera
could attract male and female B. tau
1.10%
11.8
Myroides
RISB0626
Musca altica
Order: Diptera
None
0.83%
10.8
Pseudomonas sp. CIP-10
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.86%
10.7
Peribacillus
RISB1877
Aedes aegypti
Order: Diptera
gut microbiome
0.05%
10.3
Vagococcus
RISB0042
Aldrichina grahami
Order: Diptera
None
0.28%
10.3
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
0.93%
10.3
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
0.16%
10.2
Pseudomonas fulva
RISB0088
Bombyx mori
Order: Lepidoptera
Pseudomonas fulva ZJU1 can degrade and utilize the mulberry-derived secondary metabolite, 1-deoxynojirimycin (DNJ) as the sole energy source, and after inoculation into nonspecialists, P. fulva ZJU1 increased host resistance to DNJ and significantly promoted growth
0.12%
10.1
Pantoea sp. SOD02
RISB0118
Nezara viridula
Order: Hemiptera
plays an important role in interactions between insects and plants and could therefore be considered a valuable target for the development of sustainable pest control strategies;transmitted bacteria impacted plant chemical defenses and were able to degrade toxic plant metabolites, aiding the shield bug in its nutrition
0.07%
10.1
Pseudomonas sp. FJ2-5-13
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.17%
10.0
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
0.16%
9.9
Streptomyces sp. NBC_01324
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.88%
9.8
Acinetobacter sp. SWBY1
RISB0730
Curculio chinensis
Order: Coleoptera
Acinetobacter sp. in C. chinensis enriched after treating with saponin, and when incubating bacteria with saponin for 72 h, saponin content significantly decreased from 4.054 to 1.867 mg/mL (by 16S rRNA metagenome sequencing and HPLC)
0.15%
9.8
Streptomyces sp. NBC_01324
RISB2334
Sirex noctilio
Order: Hymenoptera
degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide
0.88%
9.6
Streptomyces sp. T12
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.60%
9.6
Mammaliicoccus sciuri
RISB0075
Bombyx mori
Order: Lepidoptera
could produce a secreted chitinolytic lysozyme (termed Msp1) to damage fungal cell walls,completely inhibit the spore germination of fungal entomopathogens Metarhizium robertsii and Beauveria bassiana
0.02%
9.0
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
0.93%
8.7
Pantoea sp. SOD02
RISB0119
Nezara viridula
Order: Hemiptera
plays an important role in interactions between insects and plants and could therefore be considered a valuable target for the development of sustainable pest control strategies.
0.07%
8.6
Sphingobacterium sp. ML3W
RISB2227
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.12%
8.5
Sphingobacterium sp. UDSM-2020
RISB2227
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.03%
8.4
Sphingobacterium sp. E70
RISB2227
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.02%
8.4
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
0.12%
8.1
Proteus vulgaris
RISB0001
Leptinotarsa decemlineata
Order: Coleoptera
produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation
0.05%
7.8
Enterococcus faecalis
RISB0497
Cryptolestes ferrugineus
Order: Coleoptera
bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.
0.08%
7.7
Carnobacterium maltaromaticum
RISB1693
Plutella xylostella
Order: Lepidoptera
play an important role in the breakdown of plant cell walls, detoxification of plant phenolics, and synthesis of amino acids.
0.03%
7.5
Carnobacterium maltaromaticum
RISB1692
Plutella xylostella
Order: Lepidoptera
participate in the synthesis of host lacking amino acids histidine and threonine
0.03%
6.6
Paenibacillus sp. FSL W8-0194
RISB0813
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-9 oxidation pathway
0.05%
6.5
Proteus vulgaris
RISB2460
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.05%
6.1
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
0.88%
5.9
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
0.12%
5.8
Carnobacterium maltaromaticum
RISB1691
Plutella xylostella
Order: Lepidoptera
activity of cellulose and hemicellulose
0.03%
5.8
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
0.12%
5.5
Staphylococcus epidermidis
RISB1070
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.02%
5.2
Flavobacterium johnsoniae
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
0.18%
5.2
Providencia rettgeri
RISB1352
Nasonia vitripennis
Order: Hymenoptera
None
0.04%
5.0
Candidatus Cardinium
RISB0223
Bemisia tabaci
Order: Hemiptera
Cardinium could inhibit the defense response of the host plant and decrease the detoxification metabolism ability of the host whitefly, decrease the expression of detoxification metabolism genes, especially the uridine 5'-diphospho-glucuronyltransferase and P450 genes,
0.02%
5.0
Treponema
RISB2377
termite
Order: Blattodea
when grown together, two termite-gut Treponema species influence each other's gene expression in a far more comprehensive and nuanced manner than might have been predicted based on the results of previous studies on the respective pure cultures
0.05%
4.9
Clostridium
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.51%
4.7
Apibacter
RISB0603
Apis cerana
Order: Hymenoptera
The acquisition of genes for the degradation of the toxic monosaccharides potentiates Apibacter with the ability to utilize the pollen hydrolysis products, at the same time enabling monosaccharide detoxification for the host
0.06%
4.5
Raoultella
RISB2226
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
1.10%
4.4
Xanthomonas
RISB0498
Xylocopa appendiculata
Order: Hymenoptera
Xanthomonas strain from Japanese carpenter bee is effective PU-degradable bacterium and is able to use polyacryl-based PU as a nutritional source, as well as other types of PS-PU and PE-PU
0.09%
3.9
Rhizobium
RISB0135
Coccinella septempunctata
Order: Coleoptera
be commonly found in plant roots and they all have nitrogen fixation abilities
1.21%
2.8
Yersinia
RISB0492
Cimex hemipterus
Order: Hemiptera
the disruption of the abundant Yersinia possibly could be related to the enhanced susceptibility towards the insecticides
0.04%
2.5
Raoultella
RISB1672
Spodoptera frugiperda
Order: Lepidoptera
downregulated POX but upregulated trypsin PI in this plant species
1.10%
2.4
Bacteroides
RISB0256
Leptocybe invasa
Order: Hymenoptera
Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa
0.09%
2.4
Streptococcus
RISB2625
Galleria mellonella
Order: Lepidoptera
suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme
0.31%
2.3
Halomonas
RISB1808
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.94%
2.3
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.93%
2.3
Bacteroides
RISB0090
Hyphantria cunea
Order: Lepidoptera
enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.
0.09%
2.2
Candidatus Cardinium
RISB2290
Sogatella furcifera
Order: Hemiptera
dual infection with Cardinium and Wolbachia induced strong cytoplasmic incompatibility (CI) in a single host
0.02%
2.2
Bacteroides
RISB1183
Oryzaephilus surinamensis
Order: Coleoptera
supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host
0.09%
2.1
Nitrosospira
RISB0869
Sirex noctilio
Order: Hymenoptera
might be involved in degrading organic matter and fixing nitrogen occurred exclusively in the larval gut
0.03%
2.1
Xanthomonas
RISB0217
Xylocopa appendiculata
Order: Hymenoptera
strains biodegraded polyethylene terephthalate PET powder, broke it into its degradation products
0.09%
2.0
Streptococcus
RISB2624
Reticulitermes flavipes
Order: Blattodea
can be broken down into substances such as carbon dioxide, ammonia and acetic acid
0.31%
2.0
Clostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.51%
1.6
Streptococcus
RISB2604
Homona magnanima
Order: Lepidoptera
influence the growth of Bacillus thuringiensis in the larvae
0.31%
1.5
Paraclostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.02%
1.1
Halomonas
RISB1374
Bemisia tabaci
Order: Hemiptera
None
0.94%
0.9
Clostridium
RISB1959
Pyrrhocoridae
Order: Hemiptera
None
0.51%
0.5
Priestia
RISB0839
Helicoverpa armigera
Order: Lepidoptera
producing amylase
0.07%
0.4
Weeksella
RISB1265
Rheumatobates bergrothi
Order: Hemiptera
None
0.38%
0.4
Sediminibacterium
RISB0244
Spodoptera frugiperda
Order: Lepidoptera
None
0.23%
0.2
Neisseria
RISB0512
Plutella xylostella
Order: Lepidoptera
None
0.16%
0.2
Legionella
RISB1687
Polyplax serrata
Order: Phthiraptera
None
0.07%
0.1
Apibacter
RISB0604
Apis cerana
Order: Hymenoptera
None
0.06%
0.1
Treponema
RISB0169
Reticulitermes flaviceps
Order: Blattodea
None
0.05%
0.1
Yersinia
RISB0407
Anaphes nitens
Order: Hymenoptera
None
0.04%
0.0
Helicobacter
RISB0662
Melanaphis bambusae
Order: Hemiptera
None
0.03%
0.0

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