SRR5940703 - Musca domestica

Basic Information

Run: SRR5940703

Assay Type: WGS

Bioproject: PRJNA385554

Biosample: SAMN07135728

Bytes: 1963645538

Center Name: NANYANG TECHNOLOGICAL UNIVERSITY

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: Brazil

Continent: South America

Location Name: Brazil: Campinas

Latitude/Longitude: 22.8442 S 47.09639 W

Sample Information

Host: Musca domestica

Isolation: Food Market

Biosample Model: Metagenome or environmental

Collection Date: 2015-01-22

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Klebsiella oxytoca
RISB1139
Musca domestica
Order: Diptera
It is associated to newly laid housefly eggs, where it is deposited by the female, and has a role in oviposition as well as protection against potential pathogens
0.14%
38.4
Morganella morganii
RISB0772
Delia antiqua
Order: Diptera
showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
4.95%
23.2
Enterobacter asburiae
RISB1165
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
7.38%
22.9
Morganella morganii
RISB0008
Phormia regina
Order: Diptera
deterred oviposition by female stable flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria
4.95%
22.9
Klebsiella michiganensis
RISB1052
Bactrocera dorsalis
Order: Diptera
K. michiganensis BD177 has the strain-specific ability to provide three essential amino acids (phenylalanine, tryptophan and methionine) and two vitamins B (folate and riboflavin) to B. dorsalis
3.30%
22.2
Citrobacter freundii
RISB1221
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
4.31%
22.0
Morganella morganii
RISB0611
Bactrocera dorsalis
Order: Diptera
may hydrolysing nitrogenous waste and providing metabolizable nitrogen for B. dorsalis
4.95%
21.7
Citrobacter sp. FDAARGOS_156
RISB1503
Bactrocera dorsalis
Order: Diptera
Pesticide-degrading bacteria were frequently detected from pesticide-resistant insects. Susceptible insects became resistant after inoculation of the pesticide-degrading symbiont
3.05%
21.6
Citrobacter sp. Colony219
RISB1503
Bactrocera dorsalis
Order: Diptera
Pesticide-degrading bacteria were frequently detected from pesticide-resistant insects. Susceptible insects became resistant after inoculation of the pesticide-degrading symbiont
2.55%
21.1
Klebsiella michiganensis
RISB1131
Bactrocera dorsalis
Order: Diptera
promotes host resistance to low-temperature stress by stimulating its arginine and proline metabolism pathway in adult Bactrocera dorsalis
3.30%
21.1
Enterobacter sp. JBIWA008
RISB0893
Bactrocera dorsalis
Order: Diptera
be beneficial, with some quality control indices, such as adult size, pupal weight, survival rate under stress and nutritionally rich conditions, and mating competitiveness, being significantly increased, while slight nonsignificant increases in emergence rate and flight ability were observed
0.31%
20.3
Lactococcus lactis
RISB0131
Ceratitis capitata
Order: Diptera
The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The  colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.
0.19%
20.2
Enterobacter sp. HK169
RISB0893
Bactrocera dorsalis
Order: Diptera
be beneficial, with some quality control indices, such as adult size, pupal weight, survival rate under stress and nutritionally rich conditions, and mating competitiveness, being significantly increased, while slight nonsignificant increases in emergence rate and flight ability were observed
0.14%
20.1
Listeria monocytogenes
RISB2308
Drosophila melanogaster
Order: Diptera
L. monocytogenes infection disrupts host energy metabolism by depleting energy stores (triglycerides and glycogen) and reducing metabolic pathway activity (beta-oxidation and glycolysis). The infection affects antioxidant defense by reducing uric acid levels and alters amino acid metabolism. These metabolic changes are accompanied by melanization, potentially linked to decreased tyrosine levels.
0.05%
20.1
Wolbachia
RISB0766
Aedes fluviatilis
Order: Diptera
The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.
5.02%
20.0
Wolbachia
RISB0779
Drosophila melanogaster
Order: Diptera
Wolbachia infection affects differential gene expression in Drosophila testis.Genes involved in carbohydrate metabolism, lysosomal degradation, proteolysis, lipid metabolism, and immune response were upregulated in the presence of Wolbachia
5.02%
19.8
Wolbachia
RISB1408
Anastrepha fraterculus
Order: Diptera
Wolbachia is the only known reproductive symbiont present in these morphotypes. Wolbachia reduced the ability for embryonic development in crosses involving cured females and infected males within each morphotype (uni-directional CI).
5.02%
19.7
Serratia marcescens
RISB1291
Aedes aegypti
Order: Diptera
facilitates arboviral infection through a secreted protein named SmEnhancin, which digests membrane-bound mucins on the mosquito gut epithelia, thereby enhancing viral dissemination.
0.06%
18.7
Acinetobacter guillouiae
RISB0768
Delia antiqua
Order: Diptera
showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.02%
18.3
Enterococcus casseliflavus
RISB0112
Bactrocera dorsalis
Order: Diptera
increase the resistance of B. dorsalis to β-cypermethrin by regulating cytochrome P450 (P450) enzymes and α-glutathione S-transferase (GST) activities
0.23%
18.2
Lactococcus lactis
RISB0113
Bactrocera dorsalis
Order: Diptera
increase the resistance of B. dorsalis to β-cypermethrin by regulating cytochrome P450 (P450) enzymes and α-glutathione S-transferase (GST) activities
0.19%
18.2
Stenotrophomonas maltophilia
RISB1227
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.29%
18.0
Serratia marcescens
RISB0009
Phormia regina
Order: Diptera
prompted oviposition by flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria
0.06%
17.7
Enterococcus faecalis
RISB1411
Bactrocera dorsalis
Order: Diptera
female Bactrocera dorsalis fed Enterococcus faecalis and Klebsiella oxytoca enriched diets lived longer but had lower fecundity
0.09%
17.6
Stenotrophomonas maltophilia
RISB1141
Hermetia illucens
Order: Diptera
enhance the insect growth performance when reared on an unbalanced nutritionally poor diet
0.29%
17.1
Stenotrophomonas maltophilia
RISB1401
Delia antiqua
Order: Diptera
suppressed Beauveria bassiana conidia germination and hyphal growth
0.29%
16.6
Lactiplantibacillus plantarum
RISB0674
Drosophila melanogaster
Order: Diptera
could effectively inhibit fungal spore germinations
0.20%
16.2
Enterococcus faecalis
RISB0095
Bactrocera minax
Order: Diptera
egrade phenols in unripe citrus in B. minax larvae
0.09%
16.1
Serratia marcescens
RISB0096
Bactrocera minax
Order: Diptera
egrade phenols in unripe citrus in B. minax larvae
0.06%
16.1
Providencia rettgeri
RISB1001
Anastrepha obliqua
Order: Diptera
improve the sexual competitiveness of males
0.06%
15.9
Bacillus thuringiensis
RISB0820
Simulium tani
Order: Diptera
show resistance to some antibiotics
0.19%
15.9
Providencia sp. PROV188
RISB1574
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.07%
15.8
Lactococcus lactis
RISB1167
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.19%
15.8
Myroides
RISB0626
Musca altica
Order: Diptera
None
5.70%
15.7
Acinetobacter sp. WCHA55
RISB2083
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.13%
15.7
Acinetobacter sp. NEB 394
RISB2083
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.12%
15.7
Providencia rettgeri
RISB1169
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.06%
15.6
Escherichia coli
RISB1769
Calliphoridae
Order: Diptera
None
0.50%
15.5
Bacillus cereus
RISB1872
Aedes aegypti
Order: Diptera
gut microbiome
0.02%
15.3
Lactiplantibacillus plantarum
RISB0608
Drosophila melanogaster
Order: Diptera
None
0.20%
15.2
Pectobacterium carotovorum
RISB1772
Muscidae
Order: Diptera
None
0.20%
15.2
Lactobacillus
RISB1866
Drosophila melanogaster
Order: Diptera
The bacterial cells may thus be able to ameliorate the pH of the acidic region, by the release of weak bases.Additionally, the bacteria have a complex relationship with physiological processes which may affect ionic homeostasis in the gut, such as nutrition and immune function
0.14%
15.1
Acetobacter
RISB1865
Drosophila melanogaster
Order: Diptera
The bacterial cells may thus be able to ameliorate the pH of the acidic region, by the release of weak bases.Additionally, the bacteria have a complex relationship with physiological processes which may affect ionic homeostasis in the gut, such as nutrition and immune function
0.10%
15.1
Buchnera aphidicola
RISB0051
Episyrphus balteatus
Order: Diptera
None
0.07%
15.1
Bacillus cereus
RISB1701
Phlebotomus papatasi
Order: Diptera
None
0.02%
15.0
Acetobacter
RISB0961
Drosophila melanogaster
Order: Diptera
The exist of Acetobacter had a balancing effect on food ingestion when carbohydrate levels were high in the warmer months, stabilizing fitness components of flies across the year.
0.10%
13.7
Leucobacter
RISB0771
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.03%
13.3
Comamonas
RISB2021
Bactrocera dorsalis
Order: Diptera
This group in the immature stages may be helping the insects to cope with oxidative stress by supplementing available oxygen.
0.08%
12.6
Staphylococcus
RISB0427
Anopheles sinensis
Order: Diptera
be identified in each part of the hyperendemic area of this study has a potential role to interact with malaria parasites.
0.07%
12.5
Lactobacillus
RISB0185
Drosophila melanogaster
Order: Diptera
enhancing the brain levels of tyrosine decarboxylase 2 (Tdc2), which is an enzyme that synthesizes octopamine (OA)
0.14%
12.4
Acetobacter
RISB0184
Drosophila melanogaster
Order: Diptera
enhancing the brain levels of tyrosine decarboxylase 2 (Tdc2), which is an enzyme that synthesizes octopamine (OA)
0.10%
12.4
Gluconobacter
RISB0016
Aedes aegypti
Order: Diptera
Gluconobacter might increase the susceptibility of Ae. aegypti to CHIKV infection.
0.04%
11.7
Lactobacillus
RISB1714
Drosophila melanogaster
Order: Diptera
It has the potential to reduce IMI-induced susceptibility to infection.
0.14%
11.6
Dysgonomonas
RISB1235
Hermetia illucens
Order: Diptera
provides the tools for degrading of a broad range of substrates
0.21%
11.5
Gluconobacter
RISB1882
Drosophila suzukii
Order: Diptera
produce volatile substances that attract female D. suzukii
0.04%
11.2
Komagataeibacter
RISB1883
Drosophila suzukii
Order: Diptera
produce volatile substances that attract female D. suzukii
0.02%
11.2
Raoultella
RISB1575
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.03%
10.8
Chryseobacterium
RISB2092
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.13%
10.7
Chryseobacterium
RISB1874
Aedes aegypti
Order: Diptera
gut microbiome
0.13%
10.4
Comamonas
RISB1875
Aedes aegypti
Order: Diptera
gut microbiome
0.08%
10.4
Staphylococcus
RISB1881
Aedes aegypti
Order: Diptera
gut microbiome
0.07%
10.4
Leucobacter
RISB1876
Aedes aegypti
Order: Diptera
gut microbiome
0.03%
10.3
Achromobacter
RISB1869
Aedes aegypti
Order: Diptera
gut microbiome
0.03%
10.3
Alcaligenes
RISB1871
Aedes aegypti
Order: Diptera
gut microbiome
0.03%
10.3
Vagococcus
RISB0042
Aldrichina grahami
Order: Diptera
None
0.24%
10.2
Chryseobacterium
RISB0015
Aedes aegypti
Order: Diptera
None
0.13%
10.1
Comamonas
RISB2020
Bactrocera dorsalis
Order: Diptera
None
0.08%
10.1
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
0.07%
10.1
Gluconobacter
RISB0876
Drosophila suzukii
Order: Diptera
None
0.04%
10.0
Pseudomonas sp. ABC1
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.21%
10.0
Pseudomonas sp. CIP-10
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.11%
9.9
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
0.07%
9.8
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
0.50%
9.8
Streptomyces sp. NBC_01324
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.44%
9.4
Clostridium sp. DL-VIII
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.03%
9.3
Clostridium sp. BNL1100
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.02%
9.2
Streptomyces sp. T12
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.25%
9.2
Streptomyces sp. NBC_01324
RISB2334
Sirex noctilio
Order: Hymenoptera
degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide
0.44%
9.1
Pseudomonas monteilii
RISB1981
Blattella germanica
Order: Blattodea
gut microbiota contributes to production of VCAs that act as fecal aggregation agents and that cockroaches discriminate among the complex odors that emanate from a diverse microbial community
0.13%
9.0
Weissella cibaria
RISB1982
Blattella germanica
Order: Blattodea
gut microbiota contributes to production of VCAs that act as fecal aggregation agents and that cockroaches discriminate among the complex odors that emanate from a diverse microbial community
0.08%
8.9
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
0.50%
8.2
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
0.03%
8.0
Weissella cibaria
RISB0641
Formica
Order: Hymenoptera
exhibited abilities in catabolizing sugars (sucrose, trehalose, melezitose and raffinose) known to be constituents of hemipteran honeydew
0.08%
7.8
Proteus vulgaris
RISB0001
Leptinotarsa decemlineata
Order: Coleoptera
produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation
0.08%
7.8
Leclercia adecarboxylata
RISB1757
Spodoptera frugiperda
Order: Lepidoptera
degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn
0.03%
6.9
Corynebacterium variabile
RISB0363
Pagiophloeus tsushimanus
Order: Coleoptera
terpenoid-degrading: the highest degradation rates of D-camphor, linalool, and eucalyptol
0.01%
6.8
Kosakonia sp. CCTCC M2018092
RISB0810
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-16 oxidation pathway
0.02%
6.4
Leclercia adecarboxylata
RISB1758
Spodoptera frugiperda
Order: Lepidoptera
may influence the metabolization of pesticides in insects
0.03%
6.2
Proteus vulgaris
RISB2460
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.08%
6.1
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
0.03%
5.7
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
0.03%
5.5
Agrobacterium tumefaciens
RISB0650
Melanaphis bambusae
Order: Hemiptera
None
0.36%
5.4
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
0.19%
5.2
Staphylococcus
RISB0945
Callosobruchus maculatus
Order: Coleoptera
The strain encodes complete biosynthetic pathways for the production of B vitamins and amino acids, including tyrosine; A carbohydrate-active enzyme search revealed that the genome codes for a number of digestive enzymes, reflecting the nutritional ecology of C. maculatus
0.07%
5.1
Treponema
RISB2377
termite
Order: Blattodea
when grown together, two termite-gut Treponema species influence each other's gene expression in a far more comprehensive and nuanced manner than might have been predicted based on the results of previous studies on the respective pure cultures
0.12%
5.0
Bacteroides
RISB0256
Leptocybe invasa
Order: Hymenoptera
Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa
1.16%
3.5
Raoultella
RISB2226
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.03%
3.4
Yokenella
RISB1492
Nezara viridula
Order: Hemiptera
help stinkbugs to feed on soybean developing seeds in spite of its chemical defenses by degrading isoflavonoids and deactivate soybean protease inhibitors
0.26%
3.3
Bacteroides
RISB0090
Hyphantria cunea
Order: Lepidoptera
enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.
1.16%
3.3
Bacteroides
RISB1183
Oryzaephilus surinamensis
Order: Coleoptera
supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host
1.16%
3.2
Streptococcus
RISB2625
Galleria mellonella
Order: Lepidoptera
suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme
0.08%
2.1
Leuconostoc
RISB0812
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-18 oxidation pathway
0.41%
1.8
Streptococcus
RISB2624
Reticulitermes flavipes
Order: Blattodea
can be broken down into substances such as carbon dioxide, ammonia and acetic acid
0.08%
1.7
Rhizobium
RISB0135
Coccinella septempunctata
Order: Coleoptera
be commonly found in plant roots and they all have nitrogen fixation abilities
0.13%
1.7
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.23%
1.6
Halomonas
RISB1808
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.08%
1.4
Raoultella
RISB1672
Spodoptera frugiperda
Order: Lepidoptera
downregulated POX but upregulated trypsin PI in this plant species
0.03%
1.4
Streptococcus
RISB2604
Homona magnanima
Order: Lepidoptera
influence the growth of Bacillus thuringiensis in the larvae
0.08%
1.3
Paraclostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.02%
1.1
Dickeya
RISB1086
Rhodnius prolixus
Order: Hemiptera
supply enzymatic biosynthesis of B-complex vitamins
0.02%
1.0
Priestia
RISB0839
Helicoverpa armigera
Order: Lepidoptera
producing amylase
0.03%
0.4
Kluyvera
RISB1064
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.03%
0.3
Dysgonomonas
RISB1481
Brachinus elongatulus
Order: Coleoptera
None
0.21%
0.2
Flavobacterium
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
0.18%
0.2
Treponema
RISB0169
Reticulitermes flaviceps
Order: Blattodea
None
0.12%
0.1
Halomonas
RISB1374
Bemisia tabaci
Order: Hemiptera
None
0.08%
0.1
Neisseria
RISB0512
Plutella xylostella
Order: Lepidoptera
None
0.04%
0.0
Achromobacter
RISB0383
Aphis gossypii
Order: Hemiptera
None
0.03%
0.0
Legionella
RISB1687
Polyplax serrata
Order: Phthiraptera
None
0.03%
0.0
Fructobacillus
RISB0638
Formica
Order: Hymenoptera
None
0.03%
0.0

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