SRR5644307 - Pheidole flavens

Basic Information

Run: SRR5644307

Assay Type: WGS

Bioproject: PRJNA385525

Biosample: SAMN25003339

Bytes: 459198108

Center Name: EMBRAPA

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Library Selection: PCR

Platform: ILLUMINA

Geographic Information

Country: Brazil

Continent: South America

Location Name: Brazil: Mato Grosso

Latitude/Longitude: 11.8602 S 55.6222 W

Sample Information

Host: Pheidole flavens

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2015

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Gilliamella Host Order Match	RISB0102	Apis mellifera Order: Hymenoptera	Gilliamella apicola carries the gene for the desaturase FADS2, which is able to metabolize polyunsaturated fatty acids from pollen and synthesize endocannabinoid, a lipogenic neuroactive substance, thereby modulating reward learning and memory in honeybees.	95.49%	110.5
Gilliamella Host Order Match	RISB1945	Apis cerana Order: Hymenoptera	None	95.49%	105.5
Gilliamella	RISB0620	Spodoptera frugiperda Order: Lepidoptera	degrade amygdalin	95.49%	95.8
Spiroplasma Host Order Match	RISB1353	Cephus cinctus Order: Hymenoptera	The bacterium also encoded biosynthetic pathways for essential vitamins B2, B3, and B9. We identified putative Spiroplasma virulence genes: cardiolipin and chitinase.	2.49%	15.8
Apibacter Host Order Match	RISB0603	Apis cerana Order: Hymenoptera	The acquisition of genes for the degradation of the toxic monosaccharides potentiates Apibacter with the ability to utilize the pollen hydrolysis products, at the same time enabling monosaccharide detoxification for the host	0.26%	14.7
Spiroplasma Host Order Match	RISB0613	Lariophagus distinguendus Order: Hymenoptera	induces cytoplasmic incompatibility (CI)	2.49%	13.3
Spiroplasma Host Order Match	RISB0284	Formica Order: Hymenoptera	None	2.49%	12.5
Arsenophonus Host Order Match	RISB0982	Vespula penalica Order: Hymenoptera	Arsenophonus sp. has been negatively associated with honeybee hive health	0.01%	11.5
Apibacter Host Order Match	RISB0604	Apis cerana Order: Hymenoptera	None	0.26%	10.3
Arsenophonus Host Order Match	RISB0428	Nasonia vitripennis Order: Hymenoptera	male killing	0.01%	10.3
Arsenophonus Host Order Match	RISB0366	Pachycrepoideus vindemmiae Order: Hymenoptera	None	0.01%	10.0
Clostridium	RISB2301	Pyrrhocoris apterus Order: Hemiptera	could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet	1.45%	5.7
Clostridium	RISB0028	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	1.45%	2.5
Clostridium	RISB1959	Pyrrhocoridae Order: Hemiptera	None	1.45%	1.5
Chryseobacterium	RISB2092	Aedes aegypti Order: Diptera	axenic larvae cannot develop	0.01%	0.6
Priestia	RISB0839	Helicoverpa armigera Order: Lepidoptera	producing amylase	0.02%	0.4
Chryseobacterium	RISB1874	Aedes aegypti Order: Diptera	gut microbiome	0.01%	0.3
Apibacter	RISB1138	Musca domestica Order: Diptera	None	0.26%	0.3
Chryseobacterium	RISB0015	Aedes aegypti Order: Diptera	None	0.01%	0.0