SRR5642304 - Pheidole flavens

Basic Information

Run: SRR5642304

Assay Type: WGS

Bioproject: PRJNA385506

Biosample: SAMN25003331

Bytes: 714748742

Center Name: EMBRAPA

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: Brazil

Continent: South America

Location Name: Brazil: Mato Grosso

Latitude/Longitude: 11.8602 S 55.6222 W

Sample Information

Host: Pheidole flavens

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2014

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Streptomyces sp. T12
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.68%
19.6
Streptomyces sp. WAC00303
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.60%
19.6
Streptomyces sp. SUK 48
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.44%
19.4
Spiroplasma sp. SV19
RISB1353
Cephus cinctus
Order: Hymenoptera
The bacterium also encoded biosynthetic pathways for essential vitamins B2, B3, and B9. We identified putative Spiroplasma virulence genes: cardiolipin and chitinase.
0.16%
18.5
Bacillus sp. 1NLA3E
RISB0218
Xylocopa appendiculata
Order: Hymenoptera
strains biodegraded polyethylene terephthalate PET powder, broke it into its degradation products
0.21%
17.2
Bacillus sp. Y1
RISB0218
Xylocopa appendiculata
Order: Hymenoptera
strains biodegraded polyethylene terephthalate PET powder, broke it into its degradation products
0.07%
17.0
Bacillus sp. KH172YL63
RISB0218
Xylocopa appendiculata
Order: Hymenoptera
strains biodegraded polyethylene terephthalate PET powder, broke it into its degradation products
0.06%
17.0
Pseudomonas sp. CIP-10
RISB1564
Liometopum apiculatum
Order: Hymenoptera
None
1.54%
16.5
Stenotrophomonas maltophilia
RISB2004
Trichogramma chilonis
Order: Hymenoptera
could significantly increase both female count
0.39%
16.3
Gilliamella
RISB0102
Apis mellifera
Order: Hymenoptera
Gilliamella apicola carries the gene for the desaturase FADS2, which is able to metabolize polyunsaturated fatty acids from pollen and synthesize endocannabinoid, a lipogenic neuroactive substance, thereby modulating reward learning and memory in honeybees.
0.91%
15.9
Providencia sp. PROV252
RISB0984
Nasonia vitripennis
Order: Hymenoptera
may highly associated with diapause
0.14%
15.8
Wolbachia
RISB0190
Encarsia formosa
Order: Hymenoptera
Wolbachia's parthenogenesis-induction feminization factor (piff) gene modulates sex determination in Encarsia formosa by regulating doublesex (dsx) expression. When Wolbachia is removed, female-specific dsx decreases while male-specific dsx increases, resulting in haploid male offspring
0.65%
15.7
Wolbachia
RISB1584
Nasonia vitripennis
Order: Hymenoptera
there were few significant changes in immune or reproductive proteins between samples with and without Wolbachia infection. Differentially expressed proteins were involved in the binding process, catalytic activity, and the metabolic process
0.65%
15.5
Apibacter
RISB0603
Apis cerana
Order: Hymenoptera
The acquisition of genes for the degradation of the toxic monosaccharides potentiates Apibacter with the ability to utilize the pollen hydrolysis products, at the same time enabling monosaccharide detoxification for the host
0.62%
15.1
Lactobacillus apis
RISB1556
Apis florea
Order: Hymenoptera
None
0.07%
15.1
Pseudomonas sp. REST10
RISB1564
Liometopum apiculatum
Order: Hymenoptera
None
0.05%
15.1
Klebsiella pneumoniae
RISB2185
Scirpophaga incertulas
Order: Lepidoptera
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
4.56%
14.6
Wolbachia
RISB2601
Asobara tabida
Order: Hymenoptera
Wolbachia is necessary for oogenesis in these A. tabida strains,aposymbiotic female wasps were completely incapable of producing mature oocytes and therefore could not reproduce
0.65%
14.2
Weissella
RISB0641
Formica
Order: Hymenoptera
exhibited abilities in catabolizing sugars (sucrose, trehalose, melezitose and raffinose) known to be constituents of hemipteran honeydew
0.07%
12.8
Bacteroides
RISB0256
Leptocybe invasa
Order: Hymenoptera
Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa
0.13%
12.4
Massilia
RISB2151
Osmia bicornis
Order: Hymenoptera
may be essential to support Osmia larvae in their nutrient uptake
1.10%
12.4
Apilactobacillus
RISB0475
Apis mellifera
Order: Hymenoptera
A. kunkeei alleviated acetamiprid-induced symbiotic microbiota dysregulation and mortality in honeybees
0.05%
12.1
Bacteroides
RISB2590
Encarsia pergandiella
Order: Hymenoptera
associated with thelytokous parthenogenetic reproduction in Encarsia, a genus of parasitoid wasps
0.13%
12.1
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
2.55%
11.9
Burkholderia
RISB2149
Osmia bicornis
Order: Hymenoptera
may be essential to support Osmia larvae in their nutrient uptake
0.35%
11.7
Arsenophonus
RISB0982
Vespula penalica
Order: Hymenoptera
Arsenophonus sp. has been negatively associated with honeybee hive health
0.06%
11.5
Duganella
RISB2152
Osmia bicornis
Order: Hymenoptera
may be essential to support Osmia larvae in their nutrient uptake
0.12%
11.4
Variovorax
RISB2153
Osmia bicornis
Order: Hymenoptera
may be essential to support Osmia larvae in their nutrient uptake
0.09%
11.4
Pseudomonas sp. CIP-10
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
1.54%
11.4
Acinetobacter
RISB2000
Trichogramma chilonis
Order: Hymenoptera
could significantly increase both female count
0.29%
11.2
Gilliamella
RISB1945
Apis cerana
Order: Hymenoptera
None
0.91%
10.9
Burkholderia
RISB2101
Formica exsecta
Order: Hymenoptera
produce antibiotics
0.35%
10.7
Burkholderia
RISB2580
Tetraponera binghami
Order: Hymenoptera
Nitrogen fixation
0.35%
10.7
Corynebacterium
RISB1285
Aphidius colemani
Order: Hymenoptera
Repelling parasitism
0.25%
10.7
Apibacter
RISB0604
Apis cerana
Order: Hymenoptera
None
0.62%
10.6
Klebsiella pneumoniae
RISB2459
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
4.56%
10.6
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
0.38%
10.4
Lactococcus lactis
RISB0131
Ceratitis capitata
Order: Diptera
The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The  colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.
0.34%
10.3
Arsenophonus
RISB0428
Nasonia vitripennis
Order: Hymenoptera
male killing
0.06%
10.3
Klebsiella pneumoniae
RISB1994
Diatraea saccharalis
Order: Lepidoptera
possess cellulose degrading activity
4.56%
10.3
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
2.55%
10.3
Listeria monocytogenes
RISB2308
Drosophila melanogaster
Order: Diptera
L. monocytogenes infection disrupts host energy metabolism by depleting energy stores (triglycerides and glycogen) and reducing metabolic pathway activity (beta-oxidation and glycolysis). The infection affects antioxidant defense by reducing uric acid levels and alters amino acid metabolism. These metabolic changes are accompanied by melanization, potentially linked to decreased tyrosine levels.
0.24%
10.2
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
0.38%
10.1
Paenibacillus polymyxa
RISB2195
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.14%
10.1
Serratia marcescens
RISB0120
Nezara viridula
Order: Hemiptera
plays an important role in interactions between insects and plants and could therefore be considered a valuable target for the development of sustainable pest control strategies;transmitted bacteria impacted plant chemical defenses and were able to degrade toxic plant metabolites, aiding the shield bug in its nutrition
0.10%
10.1
Weissella
RISB1566
Liometopum apiculatum
Order: Hymenoptera
None
0.07%
10.1
Enterococcus mundtii
RISB1733
Spodoptera littoralis
Order: Lepidoptera
actively secretes a stable class IIa bacteriocin (mundticin KS) against invading bacteria, including the opportunistic pathogens E. faecalis and E. casseliflavus, but not against other gut residents, facilitating the normal development of host gut microbiota
0.07%
10.1
Arsenophonus
RISB0366
Pachycrepoideus vindemmiae
Order: Hymenoptera
None
0.06%
10.1
Yersinia
RISB0407
Anaphes nitens
Order: Hymenoptera
None
0.06%
10.1
Serratia marcescens
RISB0477
Spodoptera litura
Order: Lepidoptera
The ingestion of bacteria negatively affected the development and nutritional physiology of insect. The bacteria after successful establishment started degrading the gut wall and invaded the haemocoel thereby causing the death of the host.
0.10%
9.9
Enterococcus mundtii
RISB0476
Spodoptera litura
Order: Lepidoptera
The ingestion of bacteria negatively affected the development and nutritional physiology of insect. The bacteria after successful establishment started degrading the gut wall and invaded the haemocoel thereby causing the death of the host.
0.07%
9.9
Serratia marcescens
RISB0747
Rhodnius prolixus
Order: Hemiptera
Acinetobacter sp. in C. chinensis enriched after treating with saponin, and when incubating bacteria with saponin for 72 h, saponin content significantly decreased from 4.054 to 1.867 mg/mL (by 16S rRNA metagenome sequencing and HPLC)
0.10%
9.8
Clostridium sp. C1
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.30%
9.5
Stenotrophomonas maltophilia
RISB1122
Bombyx mori
Order: Lepidoptera
facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.
0.39%
9.4
Clostridium sp. JN-9
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.11%
9.3
Clostridium sp. MB40-C1
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.10%
9.3
Buchnera aphidicola
RISB0685
Acyrthosiphon pisum
Order: Hemiptera
It supplies the host with vitamins and essential amino acids, such as arginine and methionine that aphids cannot synthesize or derive insufficiently from their diet, the phloem sap of plants
0.38%
9.2
Mammaliicoccus sciuri
RISB0075
Bombyx mori
Order: Lepidoptera
could produce a secreted chitinolytic lysozyme (termed Msp1) to damage fungal cell walls,completely inhibit the spore germination of fungal entomopathogens Metarhizium robertsii and Beauveria bassiana
0.08%
9.1
Enterococcus mundtii
RISB2494
Anticarsia gemmatalis
Order: Lepidoptera
allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean
0.07%
9.1
Lactococcus lactis
RISB0967
Oulema melanopus
Order: Coleoptera
contribute to the decomposition of complex carbohydrates, fatty acids, or polysaccharides in the insect gut. It might also contribute to the improvement of nutrient availability.
0.34%
8.9
Lactobacillus sp. IBH004
RISB0292
Lymantria dispar asiatica
Order: Lepidoptera
Beauveria bassiana infection-based assays showed that the mortality of non-axenic L. dispar asiatica larvae was significantly higher than that of axenic larvae at 72 h.
0.14%
8.5
Sphingobacterium sp. SRCM116780
RISB2227
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.09%
8.4
Escherichia coli
RISB2120
Galleria mellonella
Order: Lepidoptera
mediate trans-generational immune priming
2.55%
8.4
Paenibacillus sp. FSL H8-0537
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.09%
8.4
Lactococcus lactis
RISB0113
Bactrocera dorsalis
Order: Diptera
increase the resistance of B. dorsalis to β-cypermethrin by regulating cytochrome P450 (P450) enzymes and α-glutathione S-transferase (GST) activities
0.34%
8.3
Paenibacillus sp. FSL W8-0186
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.08%
8.3
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
0.28%
8.2
Spiroplasma poulsonii
RISB1346
Drosophila melanogaster
Order: Diptera
S. poulsonii protects its host against parasitoid wasps and nematodes by the action of toxins from the family of Ribosome Inactivating Proteins
0.23%
8.1
Stenotrophomonas maltophilia
RISB1227
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.39%
8.1
Spiroplasma poulsonii
RISB2264
Drosophila melanogaster
Order: Diptera
Spiroplasma coopts the yolk transport and uptake machinery to colonize the germ line and ensure efficient vertical transmission
0.23%
7.8
Carnobacterium maltaromaticum
RISB1693
Plutella xylostella
Order: Lepidoptera
play an important role in the breakdown of plant cell walls, detoxification of plant phenolics, and synthesis of amino acids.
0.06%
7.6
Carnobacterium maltaromaticum
RISB1692
Plutella xylostella
Order: Lepidoptera
participate in the synthesis of host lacking amino acids histidine and threonine
0.06%
6.7
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
0.28%
6.0
Providencia sp. PROV252
RISB1574
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.14%
5.9
Carnobacterium maltaromaticum
RISB1691
Plutella xylostella
Order: Lepidoptera
activity of cellulose and hemicellulose
0.06%
5.8
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
0.28%
5.7
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
0.57%
5.6
Bombilactobacillus bombi
RISB0617
Spodoptera frugiperda
Order: Lepidoptera
degrade amygdalin
0.07%
5.4
Staphylococcus epidermidis
RISB1070
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.18%
5.4
Acinetobacter
RISB0140
Nilaparvata lugens
Order: Hemiptera
Acinetobacter can effectively degrade cellulose and harmful substances such as polystyrene and phenol.It can help the short-winged BPH to improve its detoxification ability in harsh environments and adapt to environmental changes at any time.
0.29%
5.1
Acinetobacter
RISB0730
Curculio chinensis
Order: Coleoptera
Acinetobacter sp. in C. chinensis enriched after treating with saponin, and when incubating bacteria with saponin for 72 h, saponin content significantly decreased from 4.054 to 1.867 mg/mL (by 16S rRNA metagenome sequencing and HPLC)
0.29%
5.0
Treponema
RISB2377
termite
Order: Blattodea
when grown together, two termite-gut Treponema species influence each other's gene expression in a far more comprehensive and nuanced manner than might have been predicted based on the results of previous studies on the respective pure cultures
0.06%
4.9
Weissella
RISB1982
Blattella germanica
Order: Blattodea
gut microbiota contributes to production of VCAs that act as fecal aggregation agents and that cockroaches discriminate among the complex odors that emanate from a diverse microbial community
0.07%
3.9
Streptococcus
RISB2625
Galleria mellonella
Order: Lepidoptera
suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme
1.35%
3.4
Streptococcus
RISB2624
Reticulitermes flavipes
Order: Blattodea
can be broken down into substances such as carbon dioxide, ammonia and acetic acid
1.35%
3.0
Streptococcus
RISB2604
Homona magnanima
Order: Lepidoptera
influence the growth of Bacillus thuringiensis in the larvae
1.35%
2.6
Yersinia
RISB0492
Cimex hemipterus
Order: Hemiptera
the disruption of the abundant Yersinia possibly could be related to the enhanced susceptibility towards the insecticides
0.06%
2.5
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
1.02%
2.3
Bacteroides
RISB0090
Hyphantria cunea
Order: Lepidoptera
enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.
0.13%
2.3
Corynebacterium
RISB0363
Pagiophloeus tsushimanus
Order: Coleoptera
terpenoid-degrading: the highest degradation rates of D-camphor, linalool, and eucalyptol
0.25%
2.0
Corynebacterium
RISB0531
Helicoverpa armigera
Order: Lepidoptera
Corynebacterium sp. 2-TD, mediates the toxicity of the 2-tridecanone to H. armigera
0.25%
1.9
Bradyrhizobium
RISB0135
Coccinella septempunctata
Order: Coleoptera
be commonly found in plant roots and they all have nitrogen fixation abilities
0.31%
1.9
Lysinibacillus
RISB1416
Psammotermes hypostoma
Order: Blattodea
isolates showed significant cellulolytic activity
0.77%
1.8
Ralstonia
RISB0243
Spodoptera frugiperda
Order: Lepidoptera
None
1.74%
1.7
Leuconostoc
RISB0812
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-18 oxidation pathway
0.22%
1.6
Paraclostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.21%
1.3
Gilliamella
RISB0620
Spodoptera frugiperda
Order: Lepidoptera
degrade amygdalin
0.91%
1.3
Lysinibacillus
RISB1066
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.77%
1.0
Flavobacterium
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
0.99%
1.0
Priestia
RISB0839
Helicoverpa armigera
Order: Lepidoptera
producing amylase
0.44%
0.8
Vagococcus
RISB0042
Aldrichina grahami
Order: Diptera
None
0.78%
0.8
Chryseobacterium
RISB2092
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.15%
0.7
Cupriavidus
RISB0694
Alydus tomentosus
Order: Hemiptera
None
0.68%
0.7
Apibacter
RISB1138
Musca domestica
Order: Diptera
None
0.62%
0.6
Peribacillus
RISB1877
Aedes aegypti
Order: Diptera
gut microbiome
0.16%
0.4
Chryseobacterium
RISB1874
Aedes aegypti
Order: Diptera
gut microbiome
0.15%
0.4
Helicobacter
RISB0662
Melanaphis bambusae
Order: Hemiptera
None
0.17%
0.2
Chryseobacterium
RISB0015
Aedes aegypti
Order: Diptera
None
0.15%
0.2
Legionella
RISB1687
Polyplax serrata
Order: Phthiraptera
None
0.12%
0.1
Variovorax
RISB1712
Phlebotomus papatasi
Order: Diptera
None
0.09%
0.1
Candidatus Phytoplasma
RISB1620
Cacopsylla pyricola
Order: Hemiptera
None
0.09%
0.1
Treponema
RISB0169
Reticulitermes flaviceps
Order: Blattodea
None
0.06%
0.1
Candidatus Arthromitus
RISB2613
Multiple species
Order: None
None
0.06%
0.1

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