SRR5642299 - Pheidole flavens

Basic Information

Run: SRR5642299

Assay Type: WGS

Bioproject: PRJNA385506

Biosample: SAMN25003334

Bytes: 849155538

Center Name: EMBRAPA

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: Brazil

Continent: South America

Location Name: Brazil: Mato Grosso

Latitude/Longitude: 11.8602 S 55.6222 W

Sample Information

Host: Pheidole flavens

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2015

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Arsenophonus sp. aPb
RISB0982
Vespula penalica
Order: Hymenoptera
Arsenophonus sp. has been negatively associated with honeybee hive health
4.97%
21.4
Streptomyces sp. T12
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.37%
19.3
Streptomyces sp. SUK 48
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.35%
19.3
Streptomyces sp. WAC00303
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.22%
19.2
Spiroplasma sp. SV19
RISB1353
Cephus cinctus
Order: Hymenoptera
The bacterium also encoded biosynthetic pathways for essential vitamins B2, B3, and B9. We identified putative Spiroplasma virulence genes: cardiolipin and chitinase.
0.10%
18.4
Spiroplasma sp. TIUS-1
RISB1353
Cephus cinctus
Order: Hymenoptera
The bacterium also encoded biosynthetic pathways for essential vitamins B2, B3, and B9. We identified putative Spiroplasma virulence genes: cardiolipin and chitinase.
0.08%
18.4
Arsenophonus nasoniae
RISB0428
Nasonia vitripennis
Order: Hymenoptera
male killing
2.92%
18.2
Arsenophonus nasoniae
RISB0366
Pachycrepoideus vindemmiae
Order: Hymenoptera
None
2.92%
17.9
Pseudomonas sp. CIP-10
RISB1564
Liometopum apiculatum
Order: Hymenoptera
None
1.12%
16.1
Stenotrophomonas maltophilia
RISB2004
Trichogramma chilonis
Order: Hymenoptera
could significantly increase both female count
0.10%
16.0
Wolbachia pipientis
RISB2342
Nasonia giraulti
Order: Hymenoptera
Increase mate acceptance of infected females
0.06%
15.9
Gilliamella
RISB0102
Apis mellifera
Order: Hymenoptera
Gilliamella apicola carries the gene for the desaturase FADS2, which is able to metabolize polyunsaturated fatty acids from pollen and synthesize endocannabinoid, a lipogenic neuroactive substance, thereby modulating reward learning and memory in honeybees.
0.27%
15.3
Providencia rettgeri
RISB1352
Nasonia vitripennis
Order: Hymenoptera
None
0.16%
15.2
Wolbachia pipientis
RISB0255
Camponotus pennalicus
Order: Hymenoptera
None
0.06%
15.1
Pseudomonas sp. REST10
RISB1564
Liometopum apiculatum
Order: Hymenoptera
None
0.03%
15.0
Serratia symbiotica
RISB2331
Camponotus japonicus
Order: Hymenoptera
None
0.03%
15.0
Apibacter
RISB0603
Apis cerana
Order: Hymenoptera
The acquisition of genes for the degradation of the toxic monosaccharides potentiates Apibacter with the ability to utilize the pollen hydrolysis products, at the same time enabling monosaccharide detoxification for the host
0.24%
14.7
Bacteroides
RISB0256
Leptocybe invasa
Order: Hymenoptera
Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa
0.11%
12.4
Bacteroides
RISB2590
Encarsia pergandiella
Order: Hymenoptera
associated with thelytokous parthenogenetic reproduction in Encarsia, a genus of parasitoid wasps
0.11%
12.1
Burkholderia
RISB2149
Osmia bicornis
Order: Hymenoptera
may be essential to support Osmia larvae in their nutrient uptake
0.11%
11.4
Massilia
RISB2151
Osmia bicornis
Order: Hymenoptera
may be essential to support Osmia larvae in their nutrient uptake
0.08%
11.4
Pseudomonas sp. CIP-10
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
1.12%
10.9
Bacillus cereus
RISB2161
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.72%
10.7
Klebsiella pneumoniae
RISB2185
Scirpophaga incertulas
Order: Lepidoptera
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.50%
10.5
Burkholderia
RISB2101
Formica exsecta
Order: Hymenoptera
produce antibiotics
0.11%
10.5
Burkholderia
RISB2580
Tetraponera binghami
Order: Hymenoptera
Nitrogen fixation
0.11%
10.5
Gilliamella
RISB1945
Apis cerana
Order: Hymenoptera
None
0.27%
10.3
Apibacter
RISB0604
Apis cerana
Order: Hymenoptera
None
0.24%
10.2
Bacillus thuringiensis
RISB2177
Armadillidae
Order: Isopoda
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.12%
10.1
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
0.11%
10.1
Wolbachia pipientis
RISB0766
Aedes fluviatilis
Order: Diptera
The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.
0.06%
10.1
Yersinia
RISB0407
Anaphes nitens
Order: Hymenoptera
None
0.06%
10.1
Klebsiella oxytoca
RISB0130
Ceratitis capitata
Order: Diptera
The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The  colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.
0.05%
10.1
Enterobacter sp. C2
RISB0893
Bactrocera dorsalis
Order: Diptera
be beneficial, with some quality control indices, such as adult size, pupal weight, survival rate under stress and nutritionally rich conditions, and mating competitiveness, being significantly increased, while slight nonsignificant increases in emergence rate and flight ability were observed
0.05%
10.1
Serratia symbiotica
RISB0576
Acyrthosiphon pisum
Order: Hemiptera
process of regression from winged to wingless morph was inhibited by Serratia symbiotica. The existence of the symbiont did not affect the body mass and fecundity of adult aphids, but it increased the body weight of nymphs and temporally increased the quantity of a primary symbiont, Buchnera aphidicola
0.03%
10.0
Enterobacter sp. JUb54
RISB0893
Bactrocera dorsalis
Order: Diptera
be beneficial, with some quality control indices, such as adult size, pupal weight, survival rate under stress and nutritionally rich conditions, and mating competitiveness, being significantly increased, while slight nonsignificant increases in emergence rate and flight ability were observed
0.03%
10.0
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
0.11%
9.9
Bacillus thuringiensis
RISB0109
Tuta absoluta
Order: Lepidoptera
Individual exposure of B. thuringiensis isolates to P. absoluta revealed high susceptibility of the pest and could potentially be used to develop effective, safe and affordable microbial pesticides for the management of P. absoluta.
0.12%
9.8
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
0.43%
9.8
Serratia symbiotica
RISB0179
Acyrthosiphon pisum
Order: Hemiptera
harboring Serratia improved host aphid growth and fecundity but reduced longevity. Serratia defends aphids against P. japonica by impeding the predator's development and predation capacity, and modulating its foraging behavior
0.03%
9.6
Citrobacter sp. RHBSTW-00821
RISB1503
Bactrocera dorsalis
Order: Diptera
Pesticide-degrading bacteria were frequently detected from pesticide-resistant insects. Susceptible insects became resistant after inoculation of the pesticide-degrading symbiont
0.87%
9.4
Clostridium sp. C1
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.12%
9.3
Enterobacter sp. C2
RISB1338
Ceratitis capitata
Order: Diptera
Enterobacter sp. AA26 dry biomass can fully replace the brewer’s yeast as a protein source in medfly larval diet without any effect on the productivity and the biological quality of reared medfly of VIENNA 8 GSS
0.05%
9.3
Clostridium sp. DL-VIII
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.03%
9.3
Stenotrophomonas maltophilia
RISB1122
Bombyx mori
Order: Lepidoptera
facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.
0.10%
9.1
Mammaliicoccus sciuri
RISB0075
Bombyx mori
Order: Lepidoptera
could produce a secreted chitinolytic lysozyme (termed Msp1) to damage fungal cell walls,completely inhibit the spore germination of fungal entomopathogens Metarhizium robertsii and Beauveria bassiana
0.04%
9.0
Klebsiella oxytoca
RISB2565
Acrolepiopsis assectella
Order: Lepidoptera
Klebsiella oxytoca and Bacillus spp. produce the volatile alkyl disulfides present in the fecal pellets, which serve as kairomones to attract the parasitoid Diadromus pulchellus to the moth host
0.05%
8.9
Buchnera aphidicola
RISB0685
Acyrthosiphon pisum
Order: Hemiptera
It supplies the host with vitamins and essential amino acids, such as arginine and methionine that aphids cannot synthesize or derive insufficiently from their diet, the phloem sap of plants
0.11%
8.9
Acinetobacter pittii
RISB1977
Blattella germanica
Order: Blattodea
gut microbiota contributes to production of VCAs that act as fecal aggregation agents and that cockroaches discriminate among the complex odors that emanate from a diverse microbial community
0.03%
8.9
Citrobacter sp. RHB25-C09
RISB1503
Bactrocera dorsalis
Order: Diptera
Pesticide-degrading bacteria were frequently detected from pesticide-resistant insects. Susceptible insects became resistant after inoculation of the pesticide-degrading symbiont
0.02%
8.6
Paenibacillus sp. 19GGS1-52
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.10%
8.4
Morganella morganii
RISB0772
Delia antiqua
Order: Diptera
showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.02%
8.3
Enterococcus sp. DIV1094
RISB1393
Spodoptera frugiperda
Order: Lepidoptera
microbe-mediated assaults by maize defenses on the fall armyworm on the insect digestive and immune system reduced growth and elevated mortality in these insects
0.02%
8.2
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
0.43%
8.2
Enterococcus sp. DIV1094
RISB1490
Nezara viridula
Order: Hemiptera
help stinkbugs to feed on soybean developing seeds in spite of its chemical defenses by degrading isoflavonoids and deactivate soybean protease inhibitors
0.02%
8.1
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
0.07%
8.0
Morganella morganii
RISB0008
Phormia regina
Order: Diptera
deterred oviposition by female stable flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria
0.02%
8.0
Citrobacter freundii
RISB0517
Leptinotarsa decemlineata
Order: Coleoptera
affect the cellular and humoral immunity of the insect, increasing its susceptibility to Bacillus thuringiensis var. tenebrionis (morrisoni) (Bt)
0.07%
8.0
Morganella morganii
RISB1867
Costelytra zealandica
Order: Coleoptera
Female beetles were previously shown to use phenol as their sex pheromone produced by symbiotic bacteria in the accessory or colleterial gland
0.02%
7.9
Stenotrophomonas maltophilia
RISB1227
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.10%
7.8
Enterococcus faecalis
RISB0497
Cryptolestes ferrugineus
Order: Coleoptera
bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.
0.16%
7.7
Spiroplasma ixodetis
RISB0842
Dactylopius coccus
Order: Hemiptera
use the T4SS to interact with the Dactylopius cells, which show a strong interaction and molecular signaling in the symbiosis
0.11%
7.6
Leclercia adecarboxylata
RISB1757
Spodoptera frugiperda
Order: Lepidoptera
degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn
0.12%
6.9
Paenibacillus sp. 19GGS1-52
RISB0813
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-9 oxidation pathway
0.10%
6.5
Kosakonia sp. BYX6
RISB0810
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-16 oxidation pathway
0.03%
6.5
Leclercia adecarboxylata
RISB1758
Spodoptera frugiperda
Order: Lepidoptera
may influence the metabolization of pesticides in insects
0.12%
6.3
Escherichia coli
RISB2120
Galleria mellonella
Order: Lepidoptera
mediate trans-generational immune priming
0.43%
6.3
Providencia rettgeri
RISB1001
Anastrepha obliqua
Order: Diptera
improve the sexual competitiveness of males
0.16%
6.0
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
0.07%
5.8
Providencia rettgeri
RISB1169
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.16%
5.7
Paenibacillus sp. 19GGS1-52
RISB2098
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.10%
5.7
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
0.07%
5.5
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
0.46%
5.5
Staphylococcus epidermidis
RISB1070
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.04%
5.3
Lactococcus
RISB0131
Ceratitis capitata
Order: Diptera
The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The  colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.
0.08%
5.1
Trabulsiella
RISB2201
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.03%
5.0
Pseudocitrobacter corydidari
RISB0696
Corydidarum magnifica
Order: Blattodea
None
0.02%
5.0
Candidatus Erwinia haradaeae
RISB1632
Lachninae
Order: Hemiptera
None
0.02%
5.0
Caballeronia zhejiangensis
RISB0688
Anasa tristis
Order: Hemiptera
None
0.02%
5.0
Lactococcus
RISB2305
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.08%
4.3
Lactococcus
RISB0967
Oulema melanopus
Order: Coleoptera
contribute to the decomposition of complex carbohydrates, fatty acids, or polysaccharides in the insect gut. It might also contribute to the improvement of nutrient availability.
0.08%
3.6
Yokenella
RISB1492
Nezara viridula
Order: Hemiptera
help stinkbugs to feed on soybean developing seeds in spite of its chemical defenses by degrading isoflavonoids and deactivate soybean protease inhibitors
0.02%
3.1
Proteus
RISB0001
Leptinotarsa decemlineata
Order: Coleoptera
produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation
0.15%
2.9
Yersinia
RISB0492
Cimex hemipterus
Order: Hemiptera
the disruption of the abundant Yersinia possibly could be related to the enhanced susceptibility towards the insecticides
0.06%
2.5
Proteus
RISB2315
Aedes aegypti
Order: Diptera
upregulates AMP gene expression, resulting in suppression of DENV infection in the mosquito gut epithelium
0.15%
2.3
Bacteroides
RISB0090
Hyphantria cunea
Order: Lepidoptera
enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.
0.11%
2.2
Streptococcus
RISB2625
Galleria mellonella
Order: Lepidoptera
suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme
0.19%
2.2
Streptococcus
RISB2624
Reticulitermes flavipes
Order: Blattodea
can be broken down into substances such as carbon dioxide, ammonia and acetic acid
0.19%
1.8
Lachnospira
RISB2110
Blattella germanica
Order: Blattodea
Hydrolyze polysaccharide; assist digestion; synthesize acetate, propionate, and butyrate
0.06%
1.8
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.42%
1.7
Streptococcus
RISB2604
Homona magnanima
Order: Lepidoptera
influence the growth of Bacillus thuringiensis in the larvae
0.19%
1.4
Proteus
RISB2460
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.15%
1.2
Paraclostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.03%
1.1
Cronobacter
RISB0247
Tenebrio molitor
Order: Coleoptera
may be indirectly involved in the digestion of PE
0.06%
1.0
Aeromonas
RISB2456
Bombyx mori
Order: Lepidoptera
able to utilize the CMcellulose and xylan
0.03%
0.9
Cedecea
RISB1570
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.04%
0.8
Trabulsiella
RISB1685
Melolontha hippocastani
Order: Coleoptera
Involved in cellulose degradation
0.03%
0.7
Gilliamella
RISB0620
Spodoptera frugiperda
Order: Lepidoptera
degrade amygdalin
0.27%
0.6
Aeromonas
RISB2086
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.03%
0.6
Ralstonia
RISB0243
Spodoptera frugiperda
Order: Lepidoptera
None
0.54%
0.5
Priestia
RISB0839
Helicoverpa armigera
Order: Lepidoptera
producing amylase
0.11%
0.5
Aeromonas
RISB1145
Tenebrio molitor
Order: Coleoptera
degrading plastics
0.03%
0.4
Kluyvera
RISB1064
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.04%
0.3
Apibacter
RISB1138
Musca domestica
Order: Diptera
None
0.24%
0.2
Cupriavidus
RISB0694
Alydus tomentosus
Order: Hemiptera
None
0.18%
0.2
Flavobacterium
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
0.16%
0.2
Vagococcus
RISB0042
Aldrichina grahami
Order: Diptera
None
0.09%
0.1
Cedecea
RISB0504
Plutella xylostella
Order: Lepidoptera
None
0.04%
0.0
Helicobacter
RISB0662
Melanaphis bambusae
Order: Hemiptera
None
0.03%
0.0
Legionella
RISB1687
Polyplax serrata
Order: Phthiraptera
None
0.02%
0.0
Candidatus Phytoplasma
RISB1620
Cacopsylla pyricola
Order: Hemiptera
None
0.02%
0.0

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