SRR3736774 - Bactrocera oleae

Basic Information

Run: SRR3736774

Assay Type: WGS

Bioproject: PRJNA326914

Biosample: SAMN05294122

Bytes: 2456763

Center Name: UNIVERSITY OF LIVERPOOL

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Quality Control Information

Filter Percentage: 0.1395

QC Average Length: 158

Retained Reads: -

Geographic Information

Country: Greece

Continent: Europe

Location Name: Greece:Crete

Latitude/Longitude: 35.35 N 24.45 E

Sample Information

Host: Bactrocera oleae

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2015-12

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Enterobacter asburiae Species-level Match Host Order Match	RISB1165	Bactrocera dorsalis Order: Diptera	Promote the growth of larvae	52.26%	67.8
Enterobacter asburiae Species-level Match	RISB1700	Plutella xylostella Order: Lepidoptera	play an important role in the breakdown of plant cell walls, detoxification of plant phenolics, and synthesis of amino acids.	52.26%	59.8
Enterobacter asburiae Species-level Match	RISB1695	Plutella xylostella Order: Lepidoptera	participate in the synthesis of host lacking amino acids histidine and threonine	52.26%	58.9
Klebsiella pneumoniae Species-level Match Host Order Match	RISB1771	Muscidae Order: Diptera	None	43.20%	58.2
Klebsiella pneumoniae Species-level Match	RISB2185	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	43.20%	53.2
Klebsiella pneumoniae Species-level Match	RISB2459	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	43.20%	49.2
Erwinia Host Order Match Host Species Match	RISB1777	Bactrocera oleae Order: Diptera	a number of genes encoding detoxification and digestive enzymes, indicating a potential association with the ability of B. oleae to cope with green olives. In addition, a number of biological processes seem to be activated in Ca. E. dacicola during the development of larvae in olives, with the most notable being the activation of amino-acid metabolism.	4.54%	39.5
Erwinia Host Order Match Host Species Match	RISB2114	Bactrocera oleae Order: Diptera	bacteria contribute essential amino acids and metabolize urea into an available nitrogen source for the fly, thus significantly elevating egg production	4.54%	37.6
Erwinia Host Order Match Host Species Match	RISB1505	Bactrocera oleae Order: Diptera	Antibiotic-treated larvae showed high mortality on unripe olive. The symbiont expressed genes involved in oleuropein-degradation in the gut	4.54%	37.3