SRR3736771 - Bactrocera oleae

Basic Information

Run: SRR3736771

Assay Type: WGS

Bioproject: PRJNA326914

Biosample: SAMN05294122

Bytes: 408670702

Center Name: UNIVERSITY OF LIVERPOOL

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: Greece

Continent: Europe

Location Name: Greece:Crete

Latitude/Longitude: 35.35 N 24.45 E

Sample Information

Host: Bactrocera oleae

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2015-12

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Erwinia aphidicola Species-level Match Host Order Match	RISB1705	Phlebotomus papatasi Order: Diptera	None	20.02%	35.0
Serratia marcescens Species-level Match Host Order Match	RISB1291	Aedes aegypti Order: Diptera	facilitates arboviral infection through a secreted protein named SmEnhancin, which digests membrane-bound mucins on the mosquito gut epithelia, thereby enhancing viral dissemination.	5.54%	24.2
Serratia marcescens Species-level Match Host Order Match	RISB0009	Phormia regina Order: Diptera	prompted oviposition by flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria	5.54%	23.2
Escherichia coli Species-level Match Host Order Match	RISB1769	Calliphoridae Order: Diptera	None	7.25%	22.3
Pantoea sp. JZ2 Species-level Match Host Order Match	RISB1708	Phlebotomus papatasi Order: Diptera	None	6.77%	21.8
Serratia marcescens Species-level Match Host Order Match	RISB0096	Bactrocera minax Order: Diptera	egrade phenols in unripe citrus in B. minax larvae	5.54%	21.5
Klebsiella pneumoniae Species-level Match Host Order Match	RISB1771	Muscidae Order: Diptera	None	6.38%	21.4
Klebsiella oxytoca Species-level Match Host Order Match	RISB0130	Ceratitis capitata Order: Diptera	The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.	0.06%	20.1
Enterobacter sp. JBIWA005 Species-level Match Host Order Match	RISB0893	Bactrocera dorsalis Order: Diptera	be beneficial, with some quality control indices, such as adult size, pupal weight, survival rate under stress and nutritionally rich conditions, and mating competitiveness, being significantly increased, while slight nonsignificant increases in emergence rate and flight ability were observed	0.04%	20.0
Citrobacter freundii Species-level Match Host Order Match	RISB1221	Delia antiqua Order: Diptera	six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids	1.66%	19.4
Enterobacter sp. JBIWA005 Species-level Match Host Order Match	RISB1338	Ceratitis capitata Order: Diptera	Enterobacter sp. AA26 dry biomass can fully replace the brewer’s yeast as a protein source in medfly larval diet without any effect on the productivity and the biological quality of reared medfly of VIENNA 8 GSS	0.04%	19.3
Morganella morganii Species-level Match Host Order Match	RISB0772	Delia antiqua Order: Diptera	showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.84%	19.1
Klebsiella michiganensis Species-level Match Host Order Match	RISB1052	Bactrocera dorsalis Order: Diptera	K. michiganensis BD177 has the strain-specific ability to provide three essential amino acids (phenylalanine, tryptophan and methionine) and two vitamins B (folate and riboflavin) to B. dorsalis	0.21%	19.1
Morganella morganii Species-level Match Host Order Match	RISB0008	Phormia regina Order: Diptera	deterred oviposition by female stable flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria	0.84%	18.8
Citrobacter freundii Species-level Match Host Order Match	RISB1396	Delia antiqua Order: Diptera	suppressed Beauveria bassiana conidia germination and hyphal growth	1.66%	18.0
Sodalis glossinidius Species-level Match Host Order Match	RISB2256	Glossina palpalis Order: Diptera	flies harbouring this symbiont have three times greater probability of being infected by trypanosomes than flies without the symbiont.	0.07%	17.8
Enterobacter ludwigii Species-level Match Host Order Match	RISB1223	Delia antiqua Order: Diptera	six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids	0.02%	17.7
Morganella morganii Species-level Match Host Order Match	RISB0611	Bactrocera dorsalis Order: Diptera	may hydrolysing nitrogenous waste and providing metabolizable nitrogen for B. dorsalis	0.84%	17.6
Pantoea dispersa Species-level Match Host Order Match	RISB1413	Bactrocera dorsalis Order: Diptera	causing female Bactrocera dorsalis laid more eggs but had shorter lifespan	1.03%	17.5
Proteus sp. ZN5 Species-level Match Host Order Match	RISB2315	Aedes aegypti Order: Diptera	upregulates AMP gene expression, resulting in suppression of DENV infection in the mosquito gut epithelium	0.29%	17.4
Citrobacter freundii Species-level Match Host Order Match	RISB1162	Bactrocera dorsalis Order: Diptera	Promote the growth of larvae	1.66%	17.2
Pantoea sp. JZ2 Species-level Match	RISB0118	Nezara viridula Order: Hemiptera	plays an important role in interactions between insects and plants and could therefore be considered a valuable target for the development of sustainable pest control strategies;transmitted bacteria impacted plant chemical defenses and were able to degrade toxic plant metabolites, aiding the shield bug in its nutrition	6.77%	16.8
Escherichia coli Species-level Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	7.25%	16.6
Sodalis glossinidius Species-level Match Host Order Match	RISB2471	Glossina morsitans Order: Diptera	retains a thiamine ABC transporter (tbpAthiPQ) believed to salvage thiamine	0.07%	16.6
Sodalis glossinidius Species-level Match Host Order Match	RISB2531	Glossina spp. Order: Diptera	quorum sensing primes the oxidative stress response of endosymbiont	0.07%	16.4
Pectobacterium carotovorum Species-level Match Host Order Match	RISB1772	Muscidae Order: Diptera	None	0.02%	15.0
Pseudomonas Host Order Match	RISB0425	Anopheles sinensis Order: Diptera	Pseudomonas is the most prevalent microbiota in the Plasmodium-negative groups and protects mosquitoes from the invasion of malaria parasites.A low proportion of the Psuedomonas population of microbiome profiles in the hyperendemic areas, indicating that there might be some factors such as malaria parasites to disturb the balance of microbiota	0.02%	15.0
Escherichia coli Species-level Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	7.25%	15.0
Pseudomonas Host Order Match	RISB2061	Scaptomyza nigrita Order: Diptera	increased S. nigrita herbivory in bittercress，adult S. nigrita feeding was promoted by a P. fluorescens group strain, while larval feeding was promoted by a P. syringae group strain	0.02%	13.6
Pseudomonas Host Order Match	RISB1512	Delia lupini Order: Diptera	Antibiotic-treated larvae suffered growth retardation on a diet containing plant extract or swainsonine. Gut bacteria showed toxin-degradation activities in vitro	0.02%	13.3
Providencia Host Order Match	RISB1001	Anastrepha obliqua Order: Diptera	improve the sexual competitiveness of males	0.82%	11.7
Providencia Host Order Match	RISB1574	Bactrocera tau Order: Diptera	could attract male and female B. tau	0.82%	11.5
Providencia Host Order Match	RISB1168	Bactrocera dorsalis Order: Diptera	Promote the growth of larvae	0.82%	11.4
Erwinia amylovora Species-level Match	RISB0403	Anaphes nitens Order: Hymenoptera	None	5.66%	10.7
Candidatus Hamiltonella defensa Species-level Match	RISB1049	Aphis gossypii Order: Hemiptera	secondary symbiont reduction led to reduction of the total life span and intrinsic rate of natural increase as well as appearance of the deformed dead offspring. H. defensa and Arsenophonus contributed to the fitness of A. gossypii by enhancing its performance, but not through parasitoid resistance.	0.58%	10.6
Candidatus Hamiltonella defensa Species-level Match	RISB1296	Sitobion miscanthi Order: Hemiptera	Increase the reproductive capacity of wheat aphids, increase the number of offspring and reduce the age of first breeding, suppressed the salicylic acid (SA)- and jasmonic acid (JA)-related defense pathways and SA/JA accumulation	0.58%	10.2
Streptomyces Host Order Match	RISB0962	Drosophila melanogaster Order: Diptera	None	0.02%	10.0
Candidatus Hamiltonella defensa Species-level Match	RISB0630	Acyrthosiphon pisum Order: Hemiptera	In response to ladybirds, symbiont-infected pea aphids exhibited proportionately fewer evasive defences (dropping and walking away) than non-infected (cured) pea aphids, but more frequent aggressive kicking	0.58%	9.7
Blattabacterium cuenoti Species-level Match	RISB0133	Panesthiinae Order: Blattodea	enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life	0.03%	8.0
Leclercia adecarboxylata Species-level Match	RISB1757	Spodoptera frugiperda Order: Lepidoptera	degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn	0.11%	6.9
Salmonella enterica Species-level Match	RISB0413	Melanaphis sacchari Order: Hemiptera	None	1.72%	6.7
Erwinia sp. E602 Species-level Match	RISB0808	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-12 oxidation pathway	0.02%	6.4
Leclercia adecarboxylata Species-level Match	RISB1758	Spodoptera frugiperda Order: Lepidoptera	may influence the metabolization of pesticides in insects	0.11%	6.3
Blattabacterium cuenoti Species-level Match	RISB0518	Cryptocercus punctulatus Order: Blattodea	collaborative arginine biosynthesis	0.03%	5.7
Blattabacterium cuenoti Species-level Match	RISB0093	Blattella germanica Order: Blattodea	obligate endosymbiont	0.03%	5.5
Yersinia massiliensis Species-level Match	RISB0407	Anaphes nitens Order: Hymenoptera	None	0.26%	5.3
Streptomyces	RISB0334	Philanthus triangulum Order: Hymenoptera	S. philanthi protect the offspring from opportunistic pathogens by producing antibiotics ,the beewolf protects S. philanthi from oxidative and nitrosative damage by producing protective enzymes and embalming the symbiont in a secretion containing long-chain hydrocarbons	0.02%	5.0
Rahnella	RISB1623	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.04%	4.9
Streptomyces	RISB2316	Philanthinus quattuordecimpunctatus Order: Hymenoptera	host cultivate the actinomycete in specialized antennal gland reservoirs. Then symbionts are transferred to the larval cocoon, where they provide protection against pathogenic fungi by producing at least nine different antibiotics.	0.02%	4.6
Yokenella	RISB1492	Nezara viridula Order: Hemiptera	help stinkbugs to feed on soybean developing seeds in spite of its chemical defenses by degrading isoflavonoids and deactivate soybean protease inhibitors	1.12%	4.2
Symbiopectobacterium	RISB1889	Pseudococcus longispinus Order: Hemiptera	a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids	0.61%	4.0
Nocardia	RISB0947	Acromyrmex Order: Hymenoptera	Pseudonocardia in the Acromyrmex leaf-cutter ants as a protective partner against the entomopathogenic fungus Metarhizium	0.42%	2.8
Nocardia	RISB1218	Mycocepurus smithii Order: Hymenoptera	produce secondary metabolites with antibiotic activity that protects the fungus garden against pathogens	0.42%	2.5
Rahnella	RISB1800	Dendroctonus valens Order: Coleoptera	could alleviate or compromise the antagonistic effects of fungi O. minus and L. procerum on RTB larval growth	0.04%	2.2
Rahnella	RISB0741	Dendroctonus ponderosae Order: Coleoptera	R. aquatilis decreased (−)-α-pinene (38%) and (+)-α-pinene (46%) by 40% and 45% (by GC-MS), respectively	0.04%	2.1
Kluyvera	RISB1064	Oryctes rhinoceros Order: Coleoptera	gut microbe	0.07%	0.3
Lonsdalea	RISB1321	Vespa mandarinia Order: Hymenoptera	None	0.02%	0.0