SRR3480637 - Dactylopius coccus

Basic Information

Run: SRR3480637

Assay Type: WGS

Bioproject: PRJNA291435

Biosample: SAMN03943969

Bytes: 257679185

Center Name: CCG-UNAM

Instrument: 454 GS FLX+

Library Layout: SINGLE

Library Selection: PCR

Platform: LS454

Country: Mexico

Continent: North America

Location Name: Mexico: Morelos

Latitude/Longitude: 18.990361 N 99.117389 W

Isolation: insect gut

Biosample Model: Metagenome or environmental

Collection Date: 2011

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Spiroplasma ixodetis Species-level Match Host Order Match Host Species Match	RISB0842	Dactylopius coccus Order: Hemiptera	use the T4SS to interact with the Dactylopius cells, which show a strong interaction and molecular signaling in the symbiosis	2.51%	40.0
Wolbachia pipientis Species-level Match	RISB0766	Aedes fluviatilis Order: Diptera	The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.	1.81%	11.8
Wolbachia pipientis Species-level Match	RISB1515	Drosophila melanogaster Order: Diptera	increases the recombination rate observed across two genomic intervals and increases the efficacy of natural selection in hosts	1.81%	9.4
Wolbachia pipientis Species-level Match	RISB1354	Drosophila melanogaster Order: Diptera	Wolbachia influence octopamine metabolism in the Drosophila females, which is by the symbiont genotype	1.81%	8.9