SRR3312979 - Trioza apicalis
Basic Information
Run: SRR3312979
Assay Type: WGS
Bioproject: PRJNA312061
Biosample: SAMN04493263
Bytes: 503106889
Center Name: UNIVERSITY OF HELSINKI
Sequencing Information
Instrument: PacBio RS
Library Layout: PAIRED
Library Selection: RANDOM
Platform: PACBIO_SMRT
Geographic Information
Country: Finland
Continent: Europe
Location Name: Finland: Forssa
Latitude/Longitude: 60.8 N 23.5 E
Sample Information
Host: Trioza apicalis
Isolation: carrot field
Biosample Model: Microbe\, viral or environmental
Collection Date: 2012-06
Taxonomic Classification
Taxonomic visualization Not Available
The interactive Krona chart for this metagenome is currently being processed or unavailable for metagenome quality reason. Please check back later or download the raw files below.
Potential Symbionts
About Potential Symbionts
This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:
- Relative abundance in the sample
- Species-level matches with known symbionts
- Host insect order matches with reference records
- Completeness and richness of functional records
Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:
- Relative abundance in sample
- Species-level matches with known symbionts
- Host insect order matches
- Functional record completeness
Note: Showing top 3 highest scoring records for each species/genus
| Symbiont Name | Record | Host Species | Function | Abundance |
Score
Score Composition:
Higher scores indicate stronger symbiotic relationship potential |
|---|
Download Files
Taxonomic Analysis Files
Assembly & Gene Prediction
Raw Sequencing Files
Direct download from NCBI SRARaw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.