SRR3312806 - Trioza apicalis

Basic Information

Run: SRR3312806

Assay Type: WGS

Bioproject: PRJNA312579

Biosample: SAMN04500800

Bytes: 3718339098

Center Name: UNIVERSITY OF HELSINKI

Sequencing Information

Instrument: Illumina HiSeq 2000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: Finland

Continent: Europe

Location Name: Finland: Forssa

Latitude/Longitude: 60.8 N 23.5 E

Sample Information

Host: Trioza apicalis

Isolation: carrot field

Biosample Model: Microbe\, viral or environmental

Collection Date: 2012-06

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Candidatus Liberibacter asiaticus
RISB1077
Diaphorina citri
Order: Hemiptera
CLas exposure altered the abundance of proteins involved in immunity and cellular and oxidative stress in a sex-dependent manner. Also, Clas impacted cuticular proteins and enzymes involved in chitin degradation, as well as energy metabolism and abundance of the endosymbiont 'Candidatus Profftella armatura' in both sexes similarly
0.57%
20.6
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
0.51%
20.5
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
0.51%
20.3
Serratia symbiotica
RISB0576
Acyrthosiphon pisum
Order: Hemiptera
process of regression from winged to wingless morph was inhibited by Serratia symbiotica. The existence of the symbiont did not affect the body mass and fecundity of adult aphids, but it increased the body weight of nymphs and temporally increased the quantity of a primary symbiont, Buchnera aphidicola
0.01%
20.0
Serratia marcescens
RISB0747
Rhodnius prolixus
Order: Hemiptera
Acinetobacter sp. in C. chinensis enriched after treating with saponin, and when incubating bacteria with saponin for 72 h, saponin content significantly decreased from 4.054 to 1.867 mg/mL (by 16S rRNA metagenome sequencing and HPLC)
0.01%
19.7
Serratia symbiotica
RISB0179
Acyrthosiphon pisum
Order: Hemiptera
harboring Serratia improved host aphid growth and fecundity but reduced longevity. Serratia defends aphids against P. japonica by impeding the predator's development and predation capacity, and modulating its foraging behavior
0.01%
19.5
Buchnera aphidicola
RISB0685
Acyrthosiphon pisum
Order: Hemiptera
It supplies the host with vitamins and essential amino acids, such as arginine and methionine that aphids cannot synthesize or derive insufficiently from their diet, the phloem sap of plants
0.51%
19.3
Clostridium sp. DL-VIII
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.03%
19.3
Clostridium sp. AWRP
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.01%
19.2
Candidatus Carsonella ruddii
RISB0394
Cacopsylla pyricola
Order: Hemiptera
Carsonella produces most essential amino acids (EAAs) for C. pyricola, Psyllophila complements the genes missing in Carsonella for the tryptophan pathway and synthesizes some vitamins and carotenoids
0.10%
19.1
Candidatus Schneideria nysicola
RISB0872
Nysius sp.
Order: Hemiptera
synthesize four B vitamins(Pan, pantothenate;Fol, folate; Rib, riboflavin; Pyr, pyridoxine) and five Essential Amino Acids(Ile, isoleucine; Val, valine; Lys, lysine; Thr, threonine; Phe, phenylalanine)
0.01%
19.0
Candidatus Portiera aleyrodidarum
RISB1193
Bemisia tabaci
Order: Hemiptera
synthesizing essential amino acid (e.g. tryptophan, leucine and L-Isoleucine), Bemisia tabaci provides vital nutritional support for growth, development and reproduction
0.01%
18.4
Candidatus Mikella endobia
RISB1887
Paracoccus marginatus
Order: Hemiptera
a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids
0.04%
18.4
Candidatus Gullanella endobia
RISB1885
Ferrisia virgata
Order: Hemiptera
a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids
0.01%
18.4
Candidatus Tachikawaea gelatinosa
RISB2112
Urostylis westwoodii
Order: Hemiptera
the symbiont localizes to a specialized midgut region and supplies essential amino acids deficient in the host's diet
0.01%
17.4
Candidatus Portiera aleyrodidarum
RISB2289
Bemisia tabaci
Order: Hemiptera
encoding the capability to synthetize, or participate in the synthesis of, several amino acids and carotenoids,
0.01%
17.2
Candidatus Portiera aleyrodidarum
RISB1973
Bemisia tabaci
Order: Hemiptera
a primary symbiont, which compensates for the deficient nutritional composition of its food sources
0.01%
17.0
Candidatus Ishikawella capsulata
RISB2368
Megacopta punctatissima
Order: Hemiptera
Microbe compensates for nutritional deficiency of host diet by supplying essential amino acids
0.02%
16.9
Pseudomonas sp. CIP-10
RISB0700
Nilaparvata lugens
Order: Hemiptera
Pseudomonas sp. composition and abundance correlated with BPH survivability
0.26%
16.8
Candidatus Ishikawella capsulata
RISB2543
Megacopta punctatissima
Order: Hemiptera
Enhance pest status of the insect host
0.02%
15.8
Candidatus Liberibacter asiaticus
RISB0750
Diaphorina citri
Order: Hemiptera
None
0.57%
15.6
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
0.18%
15.2
Escherichia coli
RISB0412
Melanaphis sacchari
Order: Hemiptera
None
0.14%
15.1
Candidatus Carsonella ruddii
RISB0748
Diaphorina citri
Order: Hemiptera
None
0.10%
15.1
Candidatus Erwinia haradaeae
RISB1632
Lachninae
Order: Hemiptera
None
0.04%
15.0
Candidatus Palibaumannia cicadellinicola
RISB1594
Graphocephala coccinea
Order: Hemiptera
None
0.04%
15.0
Staphylococcus xylosus
RISB0672
Melanaphis bambusae
Order: Hemiptera
None
0.04%
15.0
Arsenophonus
RISB1047
Aphis gossypii
Order: Hemiptera
secondary symbiont reduction led to reduction of the total life span and intrinsic rate of natural increase as well as appearance of the deformed dead offspring. H. defensa and Arsenophonus contributed to the fitness of A. gossypii by enhancing its performance, but not through parasitoid resistance.
0.02%
15.0
Candidatus Annandia adelgestsuga
RISB2207
Adelges tsugae
Order: Hemiptera
None
0.01%
15.0
Acinetobacter
RISB0140
Nilaparvata lugens
Order: Hemiptera
Acinetobacter can effectively degrade cellulose and harmful substances such as polystyrene and phenol.It can help the short-winged BPH to improve its detoxification ability in harsh environments and adapt to environmental changes at any time.
0.03%
14.9
Arsenophonus
RISB1300
Aphis gossypii
Order: Hemiptera
Arsenophonus sp. can have different effects on its hosts, including obligate mutualism in blood-sucking insects, improving the performance of whiteflies, or through facultative mutualism by protecting psyllids against parasitoid attacks.
0.02%
14.8
Wolbachia
RISB1444
Laodelphax striatellus
Order: Hemiptera
Wolbachia-infected host embryonic development genes revealed Ddx1 mRNAs, which is required for host viability and in the germ line, accumulated in the posterior region of 3-day-old embryos
0.55%
14.3
Wolbachia
RISB1539
Cimex lectularius
Order: Hemiptera
wCle provisions the bed bug with B vitamins.It is likely that because of wCle’s nutritional contribution to the bed bug, its titer increases in relation to bed bug growth and development.
0.55%
14.3
Rickettsiella
RISB2479
Acyrthosiphon pisum
Order: Hemiptera
changes the insects’ body color from red to green in natural populations, the infection increased amounts of blue-green polycyclic quinones, whereas it had less of an effect on yellow-red carotenoid pigments
0.15%
14.3
Lactococcus
RISB2305
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.01%
14.2
Arsenophonus
RISB1334
Ommatissus lybicus
Order: Hemiptera
the removal of Arsenophonus increased the developmental time of the immature stages and reduced the values of different life-history parameters including nymphal survival rate and adult longevity in the host
0.02%
14.2
Rickettsiella
RISB2262
Acyrthosiphon pisum
Order: Hemiptera
against this entomopathogen Pandora neoaphidis, reduce mortality and also decrease fungal sporulation on dead aphids which may help protect nearby genetically identical insects
0.15%
13.7
Rickettsiella
RISB1739
Acyrthosiphon pisum
Order: Hemiptera
in an experiment with a single-injected isolate of Rickettsiella sp. wasps were also attracted to plants fed on by aphids without secondary symbionts
0.15%
13.1
Wolbachia
RISB0491
Cimex hemipterus
Order: Hemiptera
the disruption of the abundant Wolbachia could be related to the enhanced susceptibility towards the insecticides
0.55%
12.8
Lactococcus
RISB0337
Riptortus pedestris
Order: Hemiptera
can be utilized as a novel probiotic which increase the survival rate of insects
0.01%
11.6
Acinetobacter
RISB0579
Aleurodicus rugioperculatus
Order: Hemiptera
may indirectly affect whitefly oviposition
0.03%
10.9
Bacillus thuringiensis
RISB2177
Armadillidae
Order: Isopoda
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.29%
10.3
Klebsiella pneumoniae
RISB2185
Scirpophaga incertulas
Order: Lepidoptera
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.24%
10.2
Bacillus cereus
RISB2161
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.09%
10.1
Pseudomonas sp. CIP-10
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.26%
10.1
Acinetobacter
RISB0649
Melanaphis bambusae
Order: Hemiptera
None
0.03%
10.0
Candidatus Profftia
RISB1664
Adelgidae
Order: Hemiptera
None
0.02%
10.0
Aeromonas
RISB2063
Sitobion miscanthi
Order: Hemiptera
None
0.02%
10.0
Flavobacterium
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
0.02%
10.0
Listeria monocytogenes
RISB2308
Drosophila melanogaster
Order: Diptera
L. monocytogenes infection disrupts host energy metabolism by depleting energy stores (triglycerides and glycogen) and reducing metabolic pathway activity (beta-oxidation and glycolysis). The infection affects antioxidant defense by reducing uric acid levels and alters amino acid metabolism. These metabolic changes are accompanied by melanization, potentially linked to decreased tyrosine levels.
0.01%
10.0
Cupriavidus
RISB0694
Alydus tomentosus
Order: Hemiptera
None
0.01%
10.0
Bacillus thuringiensis
RISB0109
Tuta absoluta
Order: Lepidoptera
Individual exposure of B. thuringiensis isolates to P. absoluta revealed high susceptibility of the pest and could potentially be used to develop effective, safe and affordable microbial pesticides for the management of P. absoluta.
0.29%
9.9
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
0.14%
9.5
Staphylococcus xylosus
RISB2497
Anticarsia gemmatalis
Order: Lepidoptera
allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean
0.04%
9.0
Stenotrophomonas maltophilia
RISB1122
Bombyx mori
Order: Lepidoptera
facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.
0.02%
9.0
Streptomyces sp. T12
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.04%
9.0
Streptomyces sp. MUM 178J
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.01%
9.0
Streptomyces sp. T12
RISB2334
Sirex noctilio
Order: Hymenoptera
degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide
0.04%
8.7
Pseudomonas sp. CIP-10
RISB2224
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.26%
8.6
Paenibacillus sp. PK4536
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.06%
8.3
Paenibacillus sp. FSL K6-3182
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.01%
8.3
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
0.23%
8.2
Wigglesworthia glossinidia
RISB0369
Glossina morsitans
Order: Diptera
symbiont-derived factors, likely B vitamins, are critical for the proper function of both lipid biosynthesis and lipolysis to maintain tsetse fly fecundity
0.03%
8.1
Citrobacter freundii
RISB0517
Leptinotarsa decemlineata
Order: Coleoptera
affect the cellular and humoral immunity of the insect, increasing its susceptibility to Bacillus thuringiensis var. tenebrionis (morrisoni) (Bt)
0.08%
8.0
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
0.14%
7.9
Citrobacter freundii
RISB0127
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
0.08%
7.8
Citrobacter freundii
RISB1221
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.08%
7.8
Stenotrophomonas maltophilia
RISB1227
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.02%
7.7
Wigglesworthia glossinidia
RISB1786
Glossina morsitans
Order: Diptera
Synthesis of a large number of B vitamins, to supplement the host nutritional deficiencies of the diet
0.03%
7.1
Snodgrassella alvi
RISB1423
Bombus spp.
Order: Hymenoptera
The bumble bee microbiome slightly increases survivorship when the host is exposed to selenate
0.01%
6.9
Stenotrophomonas maltophilia
RISB1141
Hermetia illucens
Order: Diptera
enhance the insect growth performance when reared on an unbalanced nutritionally poor diet
0.02%
6.8
Staphylococcus xylosus
RISB2247
Anticarsia gemmatalis
Order: Lepidoptera
mitigation of the negative effects of proteinase inhibitors produced by the host plant
0.04%
6.8
Candidatus Westeberhardia cardiocondylae
RISB1794
Cardiocondyla obscurior
Order: Hymenoptera
Contributes to cuticle formation and is responsible for host invasive success
0.02%
6.6
Paenibacillus sp. PK4536
RISB0813
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-9 oxidation pathway
0.06%
6.5
Klebsiella pneumoniae
RISB2459
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.24%
6.2
Wigglesworthia glossinidia
RISB2577
Glossina brevipalpis
Order: Diptera
provide its tsetse host with metabolites such as vitamins
0.03%
6.2
Candidatus Riesia pediculicola
RISB2452
Pediculus humanus humanus
Order: Phthiraptera
supplement body lice nutritionally deficient blood diet
0.01%
6.1
Candidatus Westeberhardia cardiocondylae
RISB1795
Cardiocondyla obscurior
Order: Hymenoptera
a contribution of Westeberhardia to cuticle formation
0.02%
6.1
Klebsiella pneumoniae
RISB1994
Diatraea saccharalis
Order: Lepidoptera
possess cellulose degrading activity
0.24%
6.0
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
0.23%
5.9
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
0.23%
5.7
Lactococcus
RISB0131
Ceratitis capitata
Order: Diptera
The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The  colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.
0.01%
5.0
Snodgrassella alvi
RISB1947
Apis cerana
Order: Hymenoptera
None
0.01%
5.0
Francisella
RISB1907
Bombyx mori
Order: Lepidoptera
After infection with F. tularensis, the induction of melanization and nodulation, which are immune responses to bacterial infection, were inhibited in silkworms. Pre-inoculation of silkworms with F. tularensis enhanced the expression of antimicrobial peptides and resistance to infection by pathogenic bacteria.
0.01%
5.0
Sphingobium
RISB1837
Dendroctonus valens
Order: Coleoptera
It can trongly degrade naringenin, and pinitol, the main soluble carbohydrate of P. tabuliformis, is retained in L. procerum-infected phloem and facilitate naringenin biodegradation by the microbiotas.
0.03%
4.1
Candidatus Blochmanniella
RISB2542
Camponotus
Order: Hymenoptera
Blochmannia provide essential amino acids to its host,Camponotus floridanus, and that it may also play a role in nitrogen recycling via its functional urease
0.11%
3.3
Candidatus Blochmanniella
RISB1827
Camponotus floridanus
Order: Hymenoptera
a modulation of immune gene expression which may facilitate tolerance towards the endosymbionts and thus may contribute to their transovarial transmission
0.11%
3.2
Candidatus Blochmanniella
RISB2448
Camponotus floridanus
Order: Hymenoptera
nutritional contribution of the bacteria to host metabolism by production of essential amino acids and urease-mediated nitrogen recycling
0.11%
2.9
Proteus
RISB0001
Leptinotarsa decemlineata
Order: Coleoptera
produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation
0.01%
2.7
Bartonella
RISB1673
Apis mellifera
Order: Hymenoptera
a gut symbiont of insects and that the adaptation to blood-feeding insects facilitated colonization of the mammalian bloodstream
0.01%
2.6
Shewanella
RISB1924
Anopheles gambiae
Order: Diptera
may be related with mediating adaptation to different ecological niches or in shaping specific adult behaviors including mating
0.01%
2.6
Bacteroides
RISB0256
Leptocybe invasa
Order: Hymenoptera
Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa
0.02%
2.3
Bacteroides
RISB0090
Hyphantria cunea
Order: Lepidoptera
enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.
0.02%
2.1
Proteus
RISB2315
Aedes aegypti
Order: Diptera
upregulates AMP gene expression, resulting in suppression of DENV infection in the mosquito gut epithelium
0.01%
2.1
Bacteroides
RISB1183
Oryzaephilus surinamensis
Order: Coleoptera
supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host
0.02%
2.1
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.52%
1.8
Candidatus Nardonella
RISB2449
Euscepes postfasciatus
Order: Coleoptera
endosymbiont is involved in normal growth and development of the host weevil
0.02%
1.5
Candidatus Nardonella
RISB1931
Lissorhoptrus oryzophilus
Order: Coleoptera
might be not playing critical roles in the reproduction of L. oryzophilus
0.02%
1.5
Paraclostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.01%
1.1
Proteus
RISB2460
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.01%
1.0
Aeromonas
RISB2456
Bombyx mori
Order: Lepidoptera
able to utilize the CMcellulose and xylan
0.02%
0.8
Candidatus Nardonella
RISB1668
Multiple species
Order: Coleoptera
Possibly tyrosine precursor provisioning
0.02%
0.8
Mycobacterium
RISB1156
Nicrophorus concolor
Order: Coleoptera
produces Antimicrobial compounds
0.02%
0.7
Aeromonas
RISB2086
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.02%
0.6
Priestia
RISB0839
Helicoverpa armigera
Order: Lepidoptera
producing amylase
0.01%
0.4
Sphingobium
RISB1880
Aedes aegypti
Order: Diptera
gut microbiome
0.03%
0.3
Neisseria
RISB0512
Plutella xylostella
Order: Lepidoptera
None
0.01%
0.0

Download Files

Taxonomic Analysis Files

Kraken Report

Detailed taxonomic classification

Download
Krona HTML

Interactive taxonomic visualization

Download
Bracken Results

Species abundance estimation

Download

Assembly & Gene Prediction

Assembled Contigs

MEGAHIT assembly results

Download
Predicted Genes

Gene sequences (FASTA)

Download
Gene Annotation

GFF format annotation

Download

Genome Binning

MetaBAT2 Bins

Compressed genome bins

Download
Bin Information

Quality metrics and statistics

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR3312806
3.5 GB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Back to Metagenomes List
Back to Table