SRR29040028 - Bombyx mori

Basic Information

Run: SRR29040028

Assay Type: WGS

Bioproject: PRJNA1111294

Biosample: SAMN41387525

Bytes: 2350723006

Center Name: SOOCHOW UNIVERSITY

Sequencing Information

Instrument: Illumina HiSeq 1000

Library Layout: PAIRED

Library Selection: cDNA

Platform: ILLUMINA

Geographic Information

Country: Laos

Continent: Asia

Location Name: Laos: Chuan Kuang Province

Latitude/Longitude: -

Sample Information

Host: Bombyx mori

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2021-10/2021-12

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Bacillus cereus Species-level Match Host Order Match	RISB2489	Anticarsia gemmatalis Order: Lepidoptera	allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean	49.19%	68.2
Bacillus cereus Species-level Match Host Order Match	RISB2237	Anticarsia gemmatalis Order: Lepidoptera	mitigation of the negative effects of proteinase inhibitors produced by the host plant	49.19%	65.9
Bacillus cereus Species-level Match Host Order Match	RISB1822	Plutella xylostella Order: Lepidoptera	degradation of acephate, used acephate as a source of carbon and energy for growth	49.19%	65.8
Enterococcus faecalis Species-level Match Host Order Match Host Species Match	RISB0727	Bombyx mori Order: Lepidoptera	with anti-N. bombycis activity might play an important role in protecting silkworms from microsporidia	0.01%	37.1
Staphylococcus Host Order Match Host Species Match	RISB1545	Bombyx mori Order: Lepidoptera	Staphyloxanthin pigment from gut symbiont presented considerable biological properties including in vitro antimicrobial activity against pathogens Staphylococcus aureus, Escherichia coli and Candida albicans; in vitro antioxidant activity by % DPPH free radical scavenging activity	0.01%	35.0
Klebsiella Host Order Match Host Species Match	RISB2459	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.00%	31.0
Staphylococcus Host Order Match Host Species Match	RISB2362	Bombyx mori Order: Lepidoptera	producing lipase in a gut environment	0.01%	30.8
Klebsiella Host Order Match Host Species Match	RISB2361	Bombyx mori Order: Lepidoptera	producing lipase in a gut environment	0.00%	30.8
Escherichia coli Species-level Match Host Order Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	0.00%	19.3
Enterococcus faecalis Species-level Match Host Order Match	RISB0026	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	0.01%	16.1
Escherichia coli Species-level Match Host Order Match	RISB2120	Galleria mellonella Order: Lepidoptera	mediate trans-generational immune priming	0.00%	15.8
Klebsiella Host Order Match	RISB2185	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.00%	15.0
Staphylococcus Host Order Match	RISB2497	Anticarsia gemmatalis Order: Lepidoptera	allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean	0.01%	14.0
Burkholderia Host Order Match	RISB0415	Endoclita signifer Order: Lepidoptera	detoxification and metabolic pesticides	0.01%	10.8
Priestia Host Order Match	RISB0839	Helicoverpa armigera Order: Lepidoptera	producing amylase	0.00%	10.3
Listeria monocytogenes Species-level Match	RISB2308	Drosophila melanogaster Order: Diptera	L. monocytogenes infection disrupts host energy metabolism by depleting energy stores (triglycerides and glycogen) and reducing metabolic pathway activity (beta-oxidation and glycolysis). The infection affects antioxidant defense by reducing uric acid levels and alters amino acid metabolism. These metabolic changes are accompanied by melanization, potentially linked to decreased tyrosine levels.	0.01%	10.0
Streptomyces sp. WAC00303 Species-level Match	RISB0943	Polybia plebeja Order: Hymenoptera	this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans	0.00%	9.0
Streptomyces sp. WAC00303 Species-level Match	RISB2334	Sirex noctilio Order: Hymenoptera	degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide	0.00%	8.7
Escherichia coli Species-level Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	0.00%	7.7
Enterococcus faecalis Species-level Match	RISB0497	Cryptolestes ferrugineus Order: Coleoptera	bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.	0.01%	7.6
Streptomyces sp. WAC00303 Species-level Match	RISB1134	mud dauber wasp Order: Hymenoptera	secondary metabolites derived from a Streptomyces sp. displayed significant inhibitory activity against hexokinase II	0.00%	7.3
Burkholderia	RISB1172	Lagria villosa Order: Coleoptera	process a cryptic gene cluster that codes for the biosynthesis of a novel antifungal polyketide with a glutarimide pharmacophore, which led to the discovery of the gladiofungins as previously-overlooked components of the antimicrobial armory of the beetle symbiont	0.01%	5.0
Burkholderia	RISB1729	Lagria hirta Order: Coleoptera	the symbionts inhibit the growth of antagonistic fungi on the eggs of the insect host, indicating that the Lagria-associated Burkholderia have evolved from plant pathogenic ancestors into insect defensive mutualists	0.01%	4.3
Vibrio	RISB1810	Monochamus galloprovincialis Order: Coleoptera	Have the ability for degradation of cellulose, proteins and starch	0.00%	1.3
Mycobacterium	RISB1156	Nicrophorus concolor Order: Coleoptera	produces Antimicrobial compounds	0.03%	0.7
Peribacillus	RISB1877	Aedes aegypti Order: Diptera	gut microbiome	0.00%	0.3
Metabacillus	RISB0902	Myzus persicae Order: Hemiptera	None	0.01%	0.0