SRR28387211 - simuliidae

Basic Information

Run: SRR28387211

Assay Type: WGS

Bioproject: PRJNA1088476

Biosample: SAMN40472415

Bytes: 938209936

Center Name: KU LEUVEN

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Library Selection: RANDOM PCR

Platform: ILLUMINA

Geographic Information

Country: Cameroon

Continent: Africa

Location Name: Cameroon

Latitude/Longitude: 4.347925 N 11.635309 E

Sample Information

Host: simuliidae

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2021-07

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Pantoea agglomerans
RISB2197
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
24.75%
34.8
Pantoea agglomerans
RISB2579
Schistocerca gregaria
Order: Orthoptera
produces an antifungal and antibacterial molecule serving as antimicrobial defense against gut pathogens
24.75%
31.8
Pantoea agglomerans
RISB0379
Frankliniella occidentalis
Order: Thysanoptera
gut symbionts are required for their development
24.75%
30.7
Enterobacter sp. T2
RISB0893
Bactrocera dorsalis
Order: Diptera
be beneficial, with some quality control indices, such as adult size, pupal weight, survival rate under stress and nutritionally rich conditions, and mating competitiveness, being significantly increased, while slight nonsignificant increases in emergence rate and flight ability were observed
0.42%
20.4
Klebsiella oxytoca
RISB0130
Ceratitis capitata
Order: Diptera
The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The  colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.
0.29%
20.3
Enterobacter sp. R4-368
RISB0893
Bactrocera dorsalis
Order: Diptera
be beneficial, with some quality control indices, such as adult size, pupal weight, survival rate under stress and nutritionally rich conditions, and mating competitiveness, being significantly increased, while slight nonsignificant increases in emergence rate and flight ability were observed
0.06%
20.1
Enterobacter sp. 638
RISB0893
Bactrocera dorsalis
Order: Diptera
be beneficial, with some quality control indices, such as adult size, pupal weight, survival rate under stress and nutritionally rich conditions, and mating competitiveness, being significantly increased, while slight nonsignificant increases in emergence rate and flight ability were observed
0.04%
20.0
Stenotrophomonas maltophilia
RISB1227
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
1.78%
19.5
Serratia marcescens
RISB1291
Aedes aegypti
Order: Diptera
facilitates arboviral infection through a secreted protein named SmEnhancin, which digests membrane-bound mucins on the mosquito gut epithelia, thereby enhancing viral dissemination.
0.27%
18.9
Klebsiella michiganensis
RISB1052
Bactrocera dorsalis
Order: Diptera
K. michiganensis BD177 has the strain-specific ability to provide three essential amino acids (phenylalanine, tryptophan and methionine) and two vitamins B (folate and riboflavin) to B. dorsalis
0.02%
18.9
Citrobacter sp. C1
RISB1503
Bactrocera dorsalis
Order: Diptera
Pesticide-degrading bacteria were frequently detected from pesticide-resistant insects. Susceptible insects became resistant after inoculation of the pesticide-degrading symbiont
0.03%
18.6
Stenotrophomonas maltophilia
RISB1141
Hermetia illucens
Order: Diptera
enhance the insect growth performance when reared on an unbalanced nutritionally poor diet
1.78%
18.6
Klebsiella oxytoca
RISB1139
Musca domestica
Order: Diptera
It is associated to newly laid housefly eggs, where it is deposited by the female, and has a role in oviposition as well as protection against potential pathogens
0.29%
18.5
Morganella morganii
RISB0772
Delia antiqua
Order: Diptera
showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.25%
18.5
Citrobacter amalonaticus
RISB0192
Hermetia illucens
Order: Diptera
can directly promote the expression of two gene families related to intestinal protein metabolism: Hitryp serine protease trypsin family and Himtp metallopeptidase family
0.06%
18.5
Paenibacillus sp. 481
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.08%
18.3
Morganella morganii
RISB0008
Phormia regina
Order: Diptera
deterred oviposition by female stable flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria
0.25%
18.2
Stenotrophomonas maltophilia
RISB1401
Delia antiqua
Order: Diptera
suppressed Beauveria bassiana conidia germination and hyphal growth
1.78%
18.1
Serratia marcescens
RISB0009
Phormia regina
Order: Diptera
prompted oviposition by flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria
0.27%
18.0
Citrobacter freundii
RISB1221
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.23%
17.9
Serratia sp. 1D1416
RISB1516
Anopheles stephensi
Order: Diptera
produce lipodepsipeptides, stephensiolides A-K, that have antibiotic activity and facilitate bacterial surface motility.
0.13%
17.5
Proteus sp. CD3
RISB2315
Aedes aegypti
Order: Diptera
upregulates AMP gene expression, resulting in suppression of DENV infection in the mosquito gut epithelium
0.02%
17.1
Morganella morganii
RISB0611
Bactrocera dorsalis
Order: Diptera
may hydrolysing nitrogenous waste and providing metabolizable nitrogen for B. dorsalis
0.25%
17.0
Bacillus cereus
RISB1872
Aedes aegypti
Order: Diptera
gut microbiome
1.55%
16.8
Bacillus cereus
RISB1701
Phlebotomus papatasi
Order: Diptera
None
1.55%
16.6
Lactiplantibacillus plantarum
RISB0674
Drosophila melanogaster
Order: Diptera
could effectively inhibit fungal spore germinations
0.20%
16.2
Escherichia coli
RISB1769
Calliphoridae
Order: Diptera
None
1.14%
16.1
Cedecea lapagei
RISB1570
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.07%
15.8
Paenibacillus sp. 481
RISB2098
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.08%
15.6
Acinetobacter sp. GSS19
RISB2083
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.05%
15.6
Acinetobacter sp. ESL0695
RISB2083
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.04%
15.6
Asaia
RISB0854
Anopheles stephensi
Order: Diptera
Two complete operons encoding cytochrome bo3-type ubiquinol terminal oxidases (cyoABCD-1 and cyoABCD-2) were found in most Asaia genomes, possibly offering alternative terminal oxidases and allowing the flexible transition of respiratory pathways. Genes involved in the production of 2,3-butandiol and inositol have been found in Asaia sp. W12, possibly contributing to biofilm formation and stress tolerance.
0.40%
15.4
Erwinia aphidicola
RISB1705
Phlebotomus papatasi
Order: Diptera
None
0.29%
15.3
Lactiplantibacillus plantarum
RISB0608
Drosophila melanogaster
Order: Diptera
None
0.20%
15.2
Acetobacter
RISB1865
Drosophila melanogaster
Order: Diptera
The bacterial cells may thus be able to ameliorate the pH of the acidic region, by the release of weak bases.Additionally, the bacteria have a complex relationship with physiological processes which may affect ionic homeostasis in the gut, such as nutrition and immune function
0.08%
15.1
Lactobacillus
RISB1866
Drosophila melanogaster
Order: Diptera
The bacterial cells may thus be able to ameliorate the pH of the acidic region, by the release of weak bases.Additionally, the bacteria have a complex relationship with physiological processes which may affect ionic homeostasis in the gut, such as nutrition and immune function
0.03%
15.0
Buchnera aphidicola
RISB0051
Episyrphus balteatus
Order: Diptera
None
0.01%
15.0
Asaia
RISB0014
Aedes aegypti
Order: Diptera
The bacterium Asaia is considered a highly promising candidate for arboviral control in Aedes mosquitoes.Asaia could play a role in inhibiting CHIKV within Ae. aegypti.
0.40%
13.8
Acetobacter
RISB0961
Drosophila melanogaster
Order: Diptera
The exist of Acetobacter had a balancing effect on food ingestion when carbohydrate levels were high in the warmer months, stabilizing fitness components of flies across the year.
0.08%
13.7
Asaia
RISB2533
Anopheles stephensi
Order: Diptera
Asaia sp. strain effectively lodged in the female gut and salivary glands, sites that are crucial for Plasmodium sp. development and transmission
0.40%
13.3
Sphingobacterium
RISB1226
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.41%
13.1
Shewanella
RISB1924
Anopheles gambiae
Order: Diptera
may be related with mediating adaptation to different ecological niches or in shaping specific adult behaviors including mating
0.07%
12.6
Staphylococcus
RISB0427
Anopheles sinensis
Order: Diptera
be identified in each part of the hyperendemic area of this study has a potential role to interact with malaria parasites.
0.05%
12.5
Acetobacter
RISB0184
Drosophila melanogaster
Order: Diptera
enhancing the brain levels of tyrosine decarboxylase 2 (Tdc2), which is an enzyme that synthesizes octopamine (OA)
0.08%
12.4
Lactobacillus
RISB0185
Drosophila melanogaster
Order: Diptera
enhancing the brain levels of tyrosine decarboxylase 2 (Tdc2), which is an enzyme that synthesizes octopamine (OA)
0.03%
12.3
Sphingobacterium
RISB1400
Delia antiqua
Order: Diptera
suppressed Beauveria bassiana conidia germination and hyphal growth
0.41%
11.8
Gluconobacter
RISB0016
Aedes aegypti
Order: Diptera
Gluconobacter might increase the susceptibility of Ae. aegypti to CHIKV infection.
0.04%
11.7
Pseudomonas sp. CIP-10
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
1.80%
11.6
Bacillus cereus
RISB2161
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
1.55%
11.6
Lactobacillus
RISB1714
Drosophila melanogaster
Order: Diptera
It has the potential to reduce IMI-induced susceptibility to infection.
0.03%
11.5
Actinomyces
RISB1234
Hermetia illucens
Order: Diptera
provides the tools for degrading of a broad range of substrates
0.09%
11.4
Gluconobacter
RISB1882
Drosophila suzukii
Order: Diptera
produce volatile substances that attract female D. suzukii
0.04%
11.2
Raoultella
RISB1575
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.04%
10.8
Alcaligenes
RISB1871
Aedes aegypti
Order: Diptera
gut microbiome
0.33%
10.6
Aeromonas
RISB2086
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.04%
10.6
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
1.14%
10.5
Staphylococcus
RISB1881
Aedes aegypti
Order: Diptera
gut microbiome
0.05%
10.3
Peribacillus
RISB1877
Aedes aegypti
Order: Diptera
gut microbiome
0.05%
10.3
Pseudomonas sp. CIP-10
RISB2224
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
1.80%
10.1
Burkholderia gladioli
RISB1172
Lagria villosa
Order: Coleoptera
process a cryptic gene cluster that codes for the biosynthesis of a novel antifungal polyketide with a glutarimide pharmacophore, which led to the discovery of the gladiofungins as previously-overlooked components of the antimicrobial armory of the beetle symbiont
0.08%
10.1
Pectobacterium
RISB1772
Muscidae
Order: Diptera
None
0.07%
10.1
Gluconobacter
RISB0876
Drosophila suzukii
Order: Diptera
None
0.04%
10.0
Pseudomonas sp. LTJR-52
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.20%
10.0
Enterococcus mundtii
RISB1733
Spodoptera littoralis
Order: Lepidoptera
actively secretes a stable class IIa bacteriocin (mundticin KS) against invading bacteria, including the opportunistic pathogens E. faecalis and E. casseliflavus, but not against other gut residents, facilitating the normal development of host gut microbiota
0.02%
10.0
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
0.01%
10.0
Enterococcus mundtii
RISB0476
Spodoptera litura
Order: Lepidoptera
The ingestion of bacteria negatively affected the development and nutritional physiology of insect. The bacteria after successful establishment started degrading the gut wall and invaded the haemocoel thereby causing the death of the host.
0.02%
9.8
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
0.01%
9.8
Acinetobacter sp. GSS19
RISB0730
Curculio chinensis
Order: Coleoptera
Acinetobacter sp. in C. chinensis enriched after treating with saponin, and when incubating bacteria with saponin for 72 h, saponin content significantly decreased from 4.054 to 1.867 mg/mL (by 16S rRNA metagenome sequencing and HPLC)
0.05%
9.7
Streptomyces sp. NBC_00239
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.70%
9.7
Streptomyces sp. NBC_00239
RISB2334
Sirex noctilio
Order: Hymenoptera
degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide
0.70%
9.4
Burkholderia gladioli
RISB1729
Lagria hirta
Order: Coleoptera
the symbionts inhibit the growth of antagonistic fungi on the eggs of the insect host, indicating that the Lagria-associated Burkholderia have evolved from plant pathogenic ancestors into insect defensive mutualists
0.08%
9.4
Streptomyces sp. WAC00303
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.08%
9.0
Enterococcus mundtii
RISB2494
Anticarsia gemmatalis
Order: Lepidoptera
allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean
0.02%
9.0
Burkholderia gladioli
RISB1604
Lagria villosa
Order: Coleoptera
Bacteria produce icosalide, an unusual two-tailed lipocyclopeptide antibiotic,which is active against entomopathogenic bacteria, thus adding to the chemical armory protecting beetle offspring
0.08%
8.9
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
1.14%
8.9
Zymobacter palmae
RISB1324
Vespa mandarinia
Order: Hymenoptera
None
2.27%
7.3
Leclercia adecarboxylata
RISB1757
Spodoptera frugiperda
Order: Lepidoptera
degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn
0.07%
6.9
Xenorhabdus bovienii
RISB2270
Acyrthosiphon pisum
Order: Hemiptera
have the gene PIN1 encoding the protease inhibitor protein against aphids
0.08%
6.5
Paenibacillus sp. 481
RISB0813
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-9 oxidation pathway
0.08%
6.5
Kosakonia sp. ML.JS2a
RISB0810
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-16 oxidation pathway
0.02%
6.4
Leclercia adecarboxylata
RISB1758
Spodoptera frugiperda
Order: Lepidoptera
may influence the metabolization of pesticides in insects
0.07%
6.2
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
0.71%
5.7
Agrobacterium tumefaciens
RISB0650
Melanaphis bambusae
Order: Hemiptera
None
0.08%
5.1
Cedecea lapagei
RISB0504
Plutella xylostella
Order: Lepidoptera
None
0.07%
5.1
Staphylococcus
RISB0945
Callosobruchus maculatus
Order: Coleoptera
The strain encodes complete biosynthetic pathways for the production of B vitamins and amino acids, including tyrosine; A carbohydrate-active enzyme search revealed that the genome codes for a number of digestive enzymes, reflecting the nutritional ecology of C. maculatus
0.05%
5.1
Rahnella
RISB1623
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.18%
5.0
Sphingobacterium
RISB2227
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.41%
3.8
Pectobacterium
RISB1889
Pseudococcus longispinus
Order: Hemiptera
a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids
0.07%
3.4
Raoultella
RISB2226
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.04%
3.4
Amycolatopsis
RISB0483
Trachymyrmex smithi
Order: Hymenoptera
inhibited the growth of Pseudonocardia symbionts under laboratory conditions. The novel analog nocamycin V from the strain was identified as the antibacterial compound
0.03%
3.4
Symbiopectobacterium
RISB1889
Pseudococcus longispinus
Order: Hemiptera
a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids
0.02%
3.4
Amycolatopsis
RISB0199
Trachymyrmex
Order: Hymenoptera
produce antibiotic EC0-0501 that has strong activity against ant-associated Actinobacteria and may also play a role in bacterial competition in this niche
0.03%
3.1
Yokenella
RISB1492
Nezara viridula
Order: Hemiptera
help stinkbugs to feed on soybean developing seeds in spite of its chemical defenses by degrading isoflavonoids and deactivate soybean protease inhibitors
0.01%
3.1
Halomonas
RISB1808
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
1.65%
3.0
Nocardia
RISB0947
Acromyrmex
Order: Hymenoptera
Pseudonocardia in the Acromyrmex leaf-cutter ants as a protective partner against the entomopathogenic fungus Metarhizium
0.22%
2.6
Yersinia
RISB0492
Cimex hemipterus
Order: Hemiptera
the disruption of the abundant Yersinia possibly could be related to the enhanced susceptibility towards the insecticides
0.07%
2.5
Rahnella
RISB1800
Dendroctonus valens
Order: Coleoptera
could alleviate or compromise the antagonistic effects of fungi O. minus and L. procerum on RTB larval growth
0.18%
2.4
Nocardia
RISB1218
Mycocepurus smithii
Order: Hymenoptera
produce secondary metabolites with antibiotic activity that protects the fungus garden against pathogens
0.22%
2.3
Rahnella
RISB0741
Dendroctonus ponderosae
Order: Coleoptera
R. aquatilis decreased (−)-α-pinene (38%) and (+)-α-pinene (46%) by 40% and 45% (by GC-MS), respectively
0.18%
2.3
Cronobacter
RISB0247
Tenebrio molitor
Order: Coleoptera
may be indirectly involved in the digestion of PE
1.18%
2.2
Blautia
RISB0091
Hyphantria cunea
Order: Lepidoptera
enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.
0.03%
2.2
Sphingomonas
RISB0420
Aphis gossypii
Order: Hemiptera
Sphingomonas could mediate A. gossypii resistance to imidacloprid by hydroxylation and nitroreduction
0.09%
2.1
Apilactobacillus
RISB0475
Apis mellifera
Order: Hymenoptera
A. kunkeei alleviated acetamiprid-induced symbiotic microbiota dysregulation and mortality in honeybees
0.02%
2.1
Sphingomonas
RISB1307
Aphis gossypii
Order: Hemiptera
have been previously described in associations with phloem-feeding insects, in low abundances
0.09%
2.0
Corynebacterium
RISB0363
Pagiophloeus tsushimanus
Order: Coleoptera
terpenoid-degrading: the highest degradation rates of D-camphor, linalool, and eucalyptol
0.04%
1.8
Sphingomonas
RISB0134
Spodoptera frugiperda
Order: Lepidoptera
provide a protective effect to against chlorantraniliprole stress to S. frugiperda
0.09%
1.7
Corynebacterium
RISB0531
Helicoverpa armigera
Order: Lepidoptera
Corynebacterium sp. 2-TD, mediates the toxicity of the 2-tridecanone to H. armigera
0.04%
1.7
Halomonas
RISB1374
Bemisia tabaci
Order: Hemiptera
None
1.65%
1.7
Leuconostoc
RISB0812
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-18 oxidation pathway
0.21%
1.6
Rhizobium
RISB0135
Coccinella septempunctata
Order: Coleoptera
be commonly found in plant roots and they all have nitrogen fixation abilities
0.06%
1.6
Fructobacillus
RISB0638
Formica
Order: Hymenoptera
None
1.60%
1.6
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.17%
1.5
Dickeya
RISB1086
Rhodnius prolixus
Order: Hemiptera
supply enzymatic biosynthesis of B-complex vitamins
0.39%
1.4
Raoultella
RISB1672
Spodoptera frugiperda
Order: Lepidoptera
downregulated POX but upregulated trypsin PI in this plant species
0.04%
1.4
Massilia
RISB2151
Osmia bicornis
Order: Hymenoptera
may be essential to support Osmia larvae in their nutrient uptake
0.02%
1.3
Pectobacterium
RISB0798
Pseudoregma bambucicola
Order: Hemiptera
may help P. bambucicola feed on the stalks of bamboo
0.07%
1.1
Neokomagataea
RISB1560
Oecophylla smaragdina
Order: Hymenoptera
may be related with the formic acid production
0.02%
0.9
Nocardioides
RISB1914
Hyles euphorbiae
Order: Lepidoptera
able to degrade alkaloids and/or latex
0.15%
0.9
Aeromonas
RISB2456
Bombyx mori
Order: Lepidoptera
able to utilize the CMcellulose and xylan
0.04%
0.9
Corynebacterium
RISB2360
Bombyx mori
Order: Lepidoptera
producing lipase in a gut environment
0.04%
0.8
Aeromonas
RISB1145
Tenebrio molitor
Order: Coleoptera
degrading plastics
0.04%
0.4
Kluyvera
RISB1064
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.01%
0.2
Flavobacterium
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
0.13%
0.1
Yersinia
RISB0407
Anaphes nitens
Order: Hymenoptera
None
0.07%
0.1
Lonsdalea
RISB1321
Vespa mandarinia
Order: Hymenoptera
None
0.02%
0.0
Cupriavidus
RISB0694
Alydus tomentosus
Order: Hemiptera
None
0.02%
0.0

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Taxonomic Analysis Files

Kraken Report

Detailed taxonomic classification

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Krona HTML

Interactive taxonomic visualization

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Bracken Results

Species abundance estimation

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Assembly & Gene Prediction

Assembled Contigs

MEGAHIT assembly results

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Predicted Genes

Gene sequences (FASTA)

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Gene Annotation

GFF format annotation

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Genome Binning

MetaBAT2 Bins

Compressed genome bins

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Bin Information

Quality metrics and statistics

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Raw Sequencing Files

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Run ID File Size
SRR28387211
894.7 MB Download

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