SRR28387183 - simuliidae

Basic Information

Run: SRR28387183

Assay Type: WGS

Bioproject: PRJNA1088476

Biosample: SAMN40472441

Bytes: 455170079

Center Name: KU LEUVEN

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Library Selection: RANDOM PCR

Platform: ILLUMINA

Geographic Information

Country: Cameroon

Continent: Africa

Location Name: Cameroon

Latitude/Longitude: 4.347925 N 11.635309 E

Sample Information

Host: simuliidae

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2021-07

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Stenotrophomonas maltophilia
RISB1227
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
11.01%
28.7
Stenotrophomonas maltophilia
RISB1141
Hermetia illucens
Order: Diptera
enhance the insect growth performance when reared on an unbalanced nutritionally poor diet
11.01%
27.8
Stenotrophomonas maltophilia
RISB1401
Delia antiqua
Order: Diptera
suppressed Beauveria bassiana conidia germination and hyphal growth
11.01%
27.4
Enterobacter sp. T2
RISB0893
Bactrocera dorsalis
Order: Diptera
be beneficial, with some quality control indices, such as adult size, pupal weight, survival rate under stress and nutritionally rich conditions, and mating competitiveness, being significantly increased, while slight nonsignificant increases in emergence rate and flight ability were observed
2.23%
22.2
Asaia
RISB0854
Anopheles stephensi
Order: Diptera
Two complete operons encoding cytochrome bo3-type ubiquinol terminal oxidases (cyoABCD-1 and cyoABCD-2) were found in most Asaia genomes, possibly offering alternative terminal oxidases and allowing the flexible transition of respiratory pathways. Genes involved in the production of 2,3-butandiol and inositol have been found in Asaia sp. W12, possibly contributing to biofilm formation and stress tolerance.
6.86%
21.9
Enterobacter sp. T2
RISB1338
Ceratitis capitata
Order: Diptera
Enterobacter sp. AA26 dry biomass can fully replace the brewer’s yeast as a protein source in medfly larval diet without any effect on the productivity and the biological quality of reared medfly of VIENNA 8 GSS
2.23%
21.5
Bacillus cereus
RISB1872
Aedes aegypti
Order: Diptera
gut microbiome
5.97%
21.3
Bacillus cereus
RISB1701
Phlebotomus papatasi
Order: Diptera
None
5.97%
21.0
Asaia
RISB0014
Aedes aegypti
Order: Diptera
The bacterium Asaia is considered a highly promising candidate for arboviral control in Aedes mosquitoes.Asaia could play a role in inhibiting CHIKV within Ae. aegypti.
6.86%
20.2
Klebsiella oxytoca
RISB0130
Ceratitis capitata
Order: Diptera
The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The  colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.
0.01%
20.0
Asaia
RISB2533
Anopheles stephensi
Order: Diptera
Asaia sp. strain effectively lodged in the female gut and salivary glands, sites that are crucial for Plasmodium sp. development and transmission
6.86%
19.8
Enterobacter sp. T2
RISB1311
Ceratitis capitata
Order: Diptera
it was shown to have positive effects in rearing efficiency when used as larval probiotics
2.23%
19.0
Paenibacillus sp. FSL K6-1330
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.04%
18.3
Klebsiella oxytoca
RISB1139
Musca domestica
Order: Diptera
It is associated to newly laid housefly eggs, where it is deposited by the female, and has a role in oviposition as well as protection against potential pathogens
0.01%
18.3
Enterococcus faecalis
RISB1411
Bactrocera dorsalis
Order: Diptera
female Bactrocera dorsalis fed Enterococcus faecalis and Klebsiella oxytoca enriched diets lived longer but had lower fecundity
0.02%
17.6
Klebsiella oxytoca
RISB1412
Bactrocera dorsalis
Order: Diptera
female Bactrocera dorsalis fed Enterococcus faecalis and Klebsiella oxytoca enriched diets lived longer but had lower fecundity
0.01%
17.6
Acetobacter oryzifermentans
RISB1742
Drosophila melanogaster
Order: Diptera
None
1.61%
16.6
Bacillus sp. 7D3
RISB0791
Anopheles barbirostris
Order: Diptera
without this midgut flora showed delayed development to become adult
0.03%
16.4
Enterococcus faecalis
RISB0095
Bactrocera minax
Order: Diptera
egrade phenols in unripe citrus in B. minax larvae
0.02%
16.0
Wolbachia
RISB0766
Aedes fluviatilis
Order: Diptera
The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.
0.88%
15.9
Providencia sp. PROV046
RISB1574
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.08%
15.8
Wolbachia
RISB0779
Drosophila melanogaster
Order: Diptera
Wolbachia infection affects differential gene expression in Drosophila testis.Genes involved in carbohydrate metabolism, lysosomal degradation, proteolysis, lipid metabolism, and immune response were upregulated in the presence of Wolbachia
0.88%
15.7
Paenibacillus sp. FSL K6-1330
RISB2098
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.04%
15.6
Acinetobacter sp. WY4
RISB2083
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.02%
15.6
Wolbachia
RISB1408
Anastrepha fraterculus
Order: Diptera
Wolbachia is the only known reproductive symbiont present in these morphotypes. Wolbachia reduced the ability for embryonic development in crosses involving cured females and infected males within each morphotype (uni-directional CI).
0.88%
15.6
Escherichia coli
RISB1769
Calliphoridae
Order: Diptera
None
0.14%
15.1
Pseudomonas sp. CIP-10
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
5.29%
15.1
Pectobacterium carotovorum
RISB1772
Muscidae
Order: Diptera
None
0.04%
15.0
Variovorax sp. PAMC 28711
RISB1712
Phlebotomus papatasi
Order: Diptera
None
0.04%
15.0
Buchnera aphidicola
RISB0051
Episyrphus balteatus
Order: Diptera
None
0.01%
15.0
Pseudomonas sp. CIP-10
RISB2224
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
5.29%
13.6
Citrobacter
RISB1503
Bactrocera dorsalis
Order: Diptera
Pesticide-degrading bacteria were frequently detected from pesticide-resistant insects. Susceptible insects became resistant after inoculation of the pesticide-degrading symbiont
0.05%
13.6
Gluconobacter
RISB0016
Aedes aegypti
Order: Diptera
Gluconobacter might increase the susceptibility of Ae. aegypti to CHIKV infection.
1.90%
13.5
Citrobacter
RISB0192
Hermetia illucens
Order: Diptera
can directly promote the expression of two gene families related to intestinal protein metabolism: Hitryp serine protease trypsin family and Himtp metallopeptidase family
0.05%
13.5
Methylobacter
RISB1440
Lutzomyia evansi
Order: Diptera
Methylobacterium can be important in several physiological and metabolic processes in Lu. evansi, which suggests that interactions could occur with Leishmania parasite
0.02%
13.4
Gluconobacter
RISB1882
Drosophila suzukii
Order: Diptera
produce volatile substances that attract female D. suzukii
1.90%
13.1
Citrobacter
RISB1221
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.05%
12.8
Shewanella
RISB1924
Anopheles gambiae
Order: Diptera
may be related with mediating adaptation to different ecological niches or in shaping specific adult behaviors including mating
0.02%
12.6
Comamonas
RISB2021
Bactrocera dorsalis
Order: Diptera
This group in the immature stages may be helping the insects to cope with oxidative stress by supplementing available oxygen.
0.04%
12.5
Staphylococcus
RISB0427
Anopheles sinensis
Order: Diptera
be identified in each part of the hyperendemic area of this study has a potential role to interact with malaria parasites.
0.05%
12.5
Proteus
RISB2315
Aedes aegypti
Order: Diptera
upregulates AMP gene expression, resulting in suppression of DENV infection in the mosquito gut epithelium
0.07%
12.2
Komagataeibacter
RISB1883
Drosophila suzukii
Order: Diptera
produce volatile substances that attract female D. suzukii
0.84%
12.0
Gluconobacter
RISB0876
Drosophila suzukii
Order: Diptera
None
1.90%
11.9
Pseudomonas sp. CIP-10
RISB0700
Nilaparvata lugens
Order: Hemiptera
Pseudomonas sp. composition and abundance correlated with BPH survivability
5.29%
11.8
Rickettsia
RISB1273
Culicoides impunctatus
Order: Diptera
possible symbiont-virus interactions
0.04%
10.8
Chryseobacterium
RISB2092
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.04%
10.6
Staphylococcus
RISB1881
Aedes aegypti
Order: Diptera
gut microbiome
0.05%
10.3
Comamonas
RISB1875
Aedes aegypti
Order: Diptera
gut microbiome
0.04%
10.3
Chryseobacterium
RISB1874
Aedes aegypti
Order: Diptera
gut microbiome
0.04%
10.3
Alcaligenes
RISB1871
Aedes aegypti
Order: Diptera
gut microbiome
0.04%
10.3
Peribacillus
RISB1877
Aedes aegypti
Order: Diptera
gut microbiome
0.01%
10.3
Burkholderia gladioli
RISB1172
Lagria villosa
Order: Coleoptera
process a cryptic gene cluster that codes for the biosynthesis of a novel antifungal polyketide with a glutarimide pharmacophore, which led to the discovery of the gladiofungins as previously-overlooked components of the antimicrobial armory of the beetle symbiont
0.10%
10.1
Proteus
RISB0054
Episyrphus balteatus
Order: Diptera
None
0.07%
10.1
Comamonas
RISB2020
Bactrocera dorsalis
Order: Diptera
None
0.04%
10.0
Rickettsia
RISB0588
Culicoides impunctatus
Order: Diptera
None
0.04%
10.0
Chryseobacterium
RISB0015
Aedes aegypti
Order: Diptera
None
0.04%
10.0
Pantoea agglomerans
RISB2197
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.03%
10.0
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
0.01%
10.0
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
0.01%
9.8
Acinetobacter sp. WY4
RISB0730
Curculio chinensis
Order: Coleoptera
Acinetobacter sp. in C. chinensis enriched after treating with saponin, and when incubating bacteria with saponin for 72 h, saponin content significantly decreased from 4.054 to 1.867 mg/mL (by 16S rRNA metagenome sequencing and HPLC)
0.02%
9.7
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
0.14%
9.5
Burkholderia gladioli
RISB1729
Lagria hirta
Order: Coleoptera
the symbionts inhibit the growth of antagonistic fungi on the eggs of the insect host, indicating that the Lagria-associated Burkholderia have evolved from plant pathogenic ancestors into insect defensive mutualists
0.10%
9.4
Streptomyces sp. T12
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.05%
9.0
Streptomyces sp. WAC00303
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.03%
9.0
Streptomyces sp. CB01881
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.02%
9.0
Burkholderia gladioli
RISB1604
Lagria villosa
Order: Coleoptera
Bacteria produce icosalide, an unusual two-tailed lipocyclopeptide antibiotic,which is active against entomopathogenic bacteria, thus adding to the chemical armory protecting beetle offspring
0.10%
8.9
Acinetobacter sp. WY4
RISB1978
Blattella germanica
Order: Blattodea
gut microbiota contributes to production of VCAs that act as fecal aggregation agents and that cockroaches discriminate among the complex odors that emanate from a diverse microbial community
0.02%
8.8
Sphingobacterium sp. dk4302
RISB2227
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.01%
8.4
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
0.01%
8.0
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
0.14%
7.9
Enterococcus faecalis
RISB0497
Cryptolestes ferrugineus
Order: Coleoptera
bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.
0.02%
7.6
Pantoea agglomerans
RISB2579
Schistocerca gregaria
Order: Orthoptera
produces an antifungal and antibacterial molecule serving as antimicrobial defense against gut pathogens
0.03%
7.1
Oecophyllibacter saccharovorans
RISB1194
Oecophylla smaragdina
Order: Hymenoptera
None
1.85%
6.9
Formicincola oecophyllae
RISB0578
Oecophylla smaragdina
Order: Hymenoptera
None
1.76%
6.8
Serratia proteamaculans
RISB1846
Dendroctonus adjunctus
Order: Coleoptera
display strong cellulolytic activity and process a single endoglucanase encoding gene
0.01%
6.7
Xenorhabdus bovienii
RISB2270
Acyrthosiphon pisum
Order: Hemiptera
have the gene PIN1 encoding the protease inhibitor protein against aphids
0.01%
6.5
Paenibacillus sp. FSL K6-1330
RISB0813
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-9 oxidation pathway
0.04%
6.4
Candidatus Kirkpatrickella diaphorinae
RISB0222
Diaphorina citri
Order: Hemiptera
None
1.36%
6.4
Halomonas
RISB1808
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
4.80%
6.1
Pantoea agglomerans
RISB0379
Frankliniella occidentalis
Order: Thysanoptera
gut symbionts are required for their development
0.03%
6.0
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
0.80%
5.8
Providencia sp. PROV046
RISB0984
Nasonia vitripennis
Order: Hymenoptera
may highly associated with diapause
0.08%
5.8
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
0.01%
5.7
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
0.01%
5.4
Zymobacter palmae
RISB1324
Vespa mandarinia
Order: Hymenoptera
None
0.16%
5.2
Agrobacterium tumefaciens
RISB0650
Melanaphis bambusae
Order: Hemiptera
None
0.13%
5.1
Staphylococcus
RISB0945
Callosobruchus maculatus
Order: Coleoptera
The strain encodes complete biosynthetic pathways for the production of B vitamins and amino acids, including tyrosine; A carbohydrate-active enzyme search revealed that the genome codes for a number of digestive enzymes, reflecting the nutritional ecology of C. maculatus
0.05%
5.1
Rickettsia
RISB0940
Bemisia tabaci
Order: Hemiptera
Rickettsia can be transmitted into plants via whitefly feeding and remain alive within the cotton plants for at least 2 weeks.Then the persistence of Rickettsia and its induced defense responses in cotton plants can increase the fitness of whitefly and, by this, Rickettsia may increase its infection and spread within its whitefly host
0.04%
5.0
Zymomonas mobilis
RISB1326
Vespa mandarinia
Order: Hymenoptera
None
0.04%
5.0
Halomonas
RISB1374
Bemisia tabaci
Order: Hemiptera
None
4.80%
4.8
Clostridium
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.06%
4.3
Weissella
RISB1982
Blattella germanica
Order: Blattodea
gut microbiota contributes to production of VCAs that act as fecal aggregation agents and that cockroaches discriminate among the complex odors that emanate from a diverse microbial community
0.02%
3.8
Amycolatopsis
RISB0483
Trachymyrmex smithi
Order: Hymenoptera
inhibited the growth of Pseudonocardia symbionts under laboratory conditions. The novel analog nocamycin V from the strain was identified as the antibacterial compound
0.03%
3.4
Amycolatopsis
RISB0199
Trachymyrmex
Order: Hymenoptera
produce antibiotic EC0-0501 that has strong activity against ant-associated Actinobacteria and may also play a role in bacterial competition in this niche
0.03%
3.1
Proteus
RISB0001
Leptinotarsa decemlineata
Order: Coleoptera
produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation
0.07%
2.8
Weissella
RISB0641
Formica
Order: Hymenoptera
exhibited abilities in catabolizing sugars (sucrose, trehalose, melezitose and raffinose) known to be constituents of hemipteran honeydew
0.02%
2.8
Leuconostoc
RISB0812
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-18 oxidation pathway
0.66%
2.1
Sphingomonas
RISB0420
Aphis gossypii
Order: Hemiptera
Sphingomonas could mediate A. gossypii resistance to imidacloprid by hydroxylation and nitroreduction
0.03%
2.1
Streptococcus
RISB2625
Galleria mellonella
Order: Lepidoptera
suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme
0.03%
2.1
Rhizobium
RISB0135
Coccinella septempunctata
Order: Coleoptera
be commonly found in plant roots and they all have nitrogen fixation abilities
0.47%
2.0
Sphingomonas
RISB1307
Aphis gossypii
Order: Hemiptera
have been previously described in associations with phloem-feeding insects, in low abundances
0.03%
1.9
Bradyrhizobium
RISB0135
Coccinella septempunctata
Order: Coleoptera
be commonly found in plant roots and they all have nitrogen fixation abilities
0.17%
1.7
Sphingomonas
RISB0134
Spodoptera frugiperda
Order: Lepidoptera
provide a protective effect to against chlorantraniliprole stress to S. frugiperda
0.03%
1.7
Streptococcus
RISB2624
Reticulitermes flavipes
Order: Blattodea
can be broken down into substances such as carbon dioxide, ammonia and acetic acid
0.03%
1.7
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.27%
1.6
Neokomagataea
RISB1560
Oecophylla smaragdina
Order: Hymenoptera
may be related with the formic acid production
0.41%
1.3
Streptococcus
RISB2604
Homona magnanima
Order: Lepidoptera
influence the growth of Bacillus thuringiensis in the larvae
0.03%
1.2
Clostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.06%
1.1
Methylobacter
RISB2053
Atractomorpha sinensis
Order: Orthoptera
associated with cellulolytic enzymes
0.02%
0.7
Priestia
RISB0839
Helicoverpa armigera
Order: Lepidoptera
producing amylase
0.03%
0.4
Methylobacter
RISB2340
Saturniidae
Order: Lepidoptera
Nitrogen fixation
0.02%
0.4
Kluyvera
RISB1064
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.03%
0.3
Flavobacterium
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
0.11%
0.1
Clostridium
RISB1959
Pyrrhocoridae
Order: Hemiptera
None
0.06%
0.1
Weissella
RISB1566
Liometopum apiculatum
Order: Hymenoptera
None
0.02%
0.0
Legionella
RISB1687
Polyplax serrata
Order: Phthiraptera
None
0.01%
0.0
Micromonospora
RISB2033
Palomena viridissima
Order: Hemiptera
None
0.01%
0.0
Helicobacter
RISB0662
Melanaphis bambusae
Order: Hemiptera
None
0.01%
0.0

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