SRR28387182 - simuliidae

Basic Information

Run: SRR28387182

Assay Type: WGS

Bioproject: PRJNA1088476

Biosample: SAMN40472442

Bytes: 673112492

Center Name: KU LEUVEN

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Library Selection: RANDOM PCR

Platform: ILLUMINA

Country: Cameroon

Continent: Africa

Location Name: Cameroon

Latitude/Longitude: 4.347925 N 11.635309 E

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2021-07

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Pantoea Host Order Match	RISB0424	Anopheles sinensis Order: Diptera	be identified in each part of the hyperendemic area of this study has a potential role to interact with malaria parasites.	3.27%	15.7
Pantoea Host Order Match	RISB2602	Rhagoletis pomonella Order: Diptera	attract the apple maggot fly, Rhagoletis pomonella, to oviposition sites on host fruit	3.27%	15.0
Pantoea Host Order Match	RISB1413	Bactrocera dorsalis Order: Diptera	causing female Bactrocera dorsalis laid more eggs but had shorter lifespan	3.27%	14.8
Sphingomonas sp. LHG3406-1 Species-level Match	RISB0134	Spodoptera frugiperda Order: Lepidoptera	provide a protective effect to against chlorantraniliprole stress to S. frugiperda	0.89%	7.5