SRR28034362 - Trixagus sericeus

Basic Information

Run: SRR28034362

Assay Type: WGS

Bioproject: PRJNA1062330

Biosample: SAMN39984756

Bytes: 1575362355

Center Name: MAX PLANCK INSTITUTE FOR CHEMICAL ECOLOGY

Sequencing Information

Instrument: NextSeq 2000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: USA

Continent: North America

Location Name: USA

Latitude/Longitude: 36.0773 N 121.5940 W

Sample Information

Host: Trixagus sericeus

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2004

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Symbiopectobacterium
RISB1889
Pseudococcus longispinus
Order: Hemiptera
a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids
40.91%
44.3
Pseudomonas sp. CIP-10
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.68%
20.5
Pantoea sp. BRR-3P
RISB0736
Psylliodes chrysocephala
Order: Coleoptera
Laboratory-reared and field-collected P. chrysocephala all contained three core genera Pantoea, Acinetobacter and Pseudomonas, and reintroduction of Pantoea sp. Pc8 in antibiotic-fed beetles restored isothiocyanate degradation ability in vivo (by 16S rRNA gene sequencing and LC-MS)
0.08%
20.1
Serratia sp. 3ACOL1
RISB0308
Rhopalotria slossonae
Order: Coleoptera
suggesting the occurrence of an unprecedented desferrioxamine-like biosynthetic pathway,including desferrioxamine B, which may help tolerating diets rich in azoxyglycosides, BMAA, and other cycad toxins, including a possible role for bacterial siderophores
0.06%
20.1
Pantoea sp. Z09
RISB0736
Psylliodes chrysocephala
Order: Coleoptera
Laboratory-reared and field-collected P. chrysocephala all contained three core genera Pantoea, Acinetobacter and Pseudomonas, and reintroduction of Pantoea sp. Pc8 in antibiotic-fed beetles restored isothiocyanate degradation ability in vivo (by 16S rRNA gene sequencing and LC-MS)
0.05%
20.1
Serratia sp. UGAL515B_01
RISB0308
Rhopalotria slossonae
Order: Coleoptera
suggesting the occurrence of an unprecedented desferrioxamine-like biosynthetic pathway,including desferrioxamine B, which may help tolerating diets rich in azoxyglycosides, BMAA, and other cycad toxins, including a possible role for bacterial siderophores
0.04%
20.0
Serratia liquefaciens
RISB1624
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.06%
19.9
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
1.96%
19.7
Sodalis glossinidius
RISB2588
Sitophilus zeamais
Order: Coleoptera
maintains and expresses inv/spa genes encoding a type III secretion system homologous to that used for invasion by bacterial pathogens
1.64%
19.3
Bacillus cereus
RISB1056
Oryctes rhinoceros
Order: Coleoptera
provide symbiotic digestive functions to Oryctes
3.09%
19.1
Pseudomonas sp. CIP-10
RISB2224
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.68%
19.0
Bacillus cereus
RISB1778
Lissorhoptrus oryzophilus
Order: Coleoptera
might be promising paratransgenesis candidates
3.09%
19.0
Citrobacter freundii
RISB0517
Leptinotarsa decemlineata
Order: Coleoptera
affect the cellular and humoral immunity of the insect, increasing its susceptibility to Bacillus thuringiensis var. tenebrionis (morrisoni) (Bt)
0.58%
18.5
Enterobacter sp. C2
RISB2221
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.06%
18.4
Klebsiella oxytoca
RISB1506
Cleonus trivittatus
Order: Coleoptera
Antibiotic-treated larvae suffered growth retardation on a diet containing plant extract or swainsonine. Gut bacteria showed toxin-degradation activities in vitro
0.09%
18.3
Citrobacter freundii
RISB0127
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
0.58%
18.3
Morganella morganii
RISB1867
Costelytra zealandica
Order: Coleoptera
Female beetles were previously shown to use phenol as their sex pheromone produced by symbiotic bacteria in the accessory or colleterial gland
0.10%
17.9
Enterobacter sp. C2
RISB0496
Sitophilus oryzae
Order: Coleoptera
bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.
0.06%
17.6
Streptomyces sp. T12
RISB0777
Copris tripartitus
Order: Coleoptera
contribute brood ball hygiene by inhibiting fungal parasites in the environment
0.88%
17.5
Streptomyces sp. WAC00303
RISB0777
Copris tripartitus
Order: Coleoptera
contribute brood ball hygiene by inhibiting fungal parasites in the environment
0.69%
17.3
Pseudomonas sp. CIP-10
RISB0815
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-15 oxidation pathway
0.68%
17.1
Enterobacter cloacae
RISB1428
Rhynchophorus ferrugineus
Order: Coleoptera
promote the development and body mass gain of RPW larvae by improving their nutrition metabolism
0.14%
17.1
Morganella morganii
RISB1548
Costelytra zealandica
Order: Coleoptera
symbionts residing in the colleterial glands produce phenol 1 as the female sex pheromone
0.10%
16.9
Morganella morganii
RISB1868
Costelytra zealandica
Order: Coleoptera
produces phenol as the sex pheromone of the host from tyrosine in the colleterial gland
0.10%
16.8
Streptomyces sp. Sge12
RISB0777
Copris tripartitus
Order: Coleoptera
contribute brood ball hygiene by inhibiting fungal parasites in the environment
0.16%
16.7
Stenotrophomonas maltophilia
RISB0139
Tenebrio molitor
Order: Coleoptera
correlated with polyvinyl chloride PVC degradation
0.60%
16.6
Erwinia sp. E602
RISB0808
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-12 oxidation pathway
0.09%
16.5
Pantoea sp. BRR-3P
RISB0814
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-14 oxidation pathway
0.08%
16.5
Kosakonia sp. BYX6
RISB0810
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-16 oxidation pathway
0.04%
16.5
Klebsiella pneumoniae
RISB1153
Tenebrio molitor
Order: Coleoptera
degrading plastics
0.78%
16.1
Citrobacter koseri
RISB1060
Oryctes rhinoceros
Order: Coleoptera
associated with insect digestive tracts
0.07%
15.9
Staphylococcus epidermidis
RISB1070
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.04%
15.3
Rahnella
RISB1623
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.14%
15.0
Acinetobacter
RISB0730
Curculio chinensis
Order: Coleoptera
Acinetobacter sp. in C. chinensis enriched after treating with saponin, and when incubating bacteria with saponin for 72 h, saponin content significantly decreased from 4.054 to 1.867 mg/mL (by 16S rRNA metagenome sequencing and HPLC)
0.12%
14.8
Spiroplasma
RISB0343
Harmonia axyridis
Order: Coleoptera
female ladybirds co-infected with Hesperomyces harmoniae and Spiroplasma had a significantly lower fecundity and hatchability compared to females with only one or no symbiont
0.13%
13.6
Acinetobacter
RISB1356
Callosobruchus maculatus
Order: Coleoptera
These bacterial phyla may allow the adults C. maculatus to survive on DDVP treated grains, thereby making it inappropriate to control the beetle populations in the field.
0.12%
13.5
Wolbachia
RISB1452
Octodonta nipae
Order: Coleoptera
Wolbachia harbored dominantly in a female than the male adult, while, no significant differences were observed between male and female body parts and tissues
0.38%
13.5
Bacillus cereus
RISB2161
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
3.09%
13.1
Proteus
RISB0001
Leptinotarsa decemlineata
Order: Coleoptera
produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation
0.09%
12.8
Wolbachia
RISB2107
Sitophilus zeamais
Order: Coleoptera
Wolbachia directly favored weevil fertility and exhibited only mild indirect effects, usually enhancing the SZPE effect
0.38%
12.8
Spiroplasma
RISB1483
Brachinus elongatulus
Order: Coleoptera
may manipulate host reproduction (e.g., cause male-killing) or provide resistance to nematodes and/or parasitoid wasps
0.13%
12.5
Acinetobacter
RISB0520
Leptinotarsa decemlineata
Order: Coleoptera
inhibited the expression of genes associated with the JA-mediated defense signaling pathway and SGA biosynthesis
0.12%
12.4
Rahnella
RISB1800
Dendroctonus valens
Order: Coleoptera
could alleviate or compromise the antagonistic effects of fungi O. minus and L. procerum on RTB larval growth
0.14%
12.3
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.93%
12.3
Rahnella
RISB0741
Dendroctonus ponderosae
Order: Coleoptera
R. aquatilis decreased (−)-α-pinene (38%) and (+)-α-pinene (46%) by 40% and 45% (by GC-MS), respectively
0.14%
12.2
Wolbachia
RISB1282
Ips sp.
Order: Coleoptera
inducing cytoplasmic incompatibility, resulting in reproductive distortions and hence
0.38%
12.1
Delftia
RISB0806
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-19 oxidation pathway
0.41%
11.8
Rickettsia
RISB1279
Ips sp.
Order: Coleoptera
inducing cytoplasmic incompatibility, resulting in reproductive distortions and hence
0.11%
11.8
Rickettsia
RISB0970
Oulema melanopus
Order: Coleoptera
may be associated with insect reproduction and maturation of their sexual organs
0.11%
11.7
Rickettsia
RISB1954
Sitona obsoletus
Order: Coleoptera
potential defensive properties against he parasitoid Microctonus aethiopoides
0.11%
11.7
Halomonas
RISB1808
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.26%
11.6
Paenibacillus
RISB0813
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-9 oxidation pathway
0.06%
11.5
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
1.96%
11.3
Cronobacter
RISB0247
Tenebrio molitor
Order: Coleoptera
may be indirectly involved in the digestion of PE
0.19%
11.2
Spiroplasma
RISB0250
Tenebrio molitor
Order: Coleoptera
associated with PE biodegradation
0.13%
10.8
Klebsiella pneumoniae
RISB2185
Scirpophaga incertulas
Order: Lepidoptera
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.78%
10.8
Trabulsiella
RISB1685
Melolontha hippocastani
Order: Coleoptera
Involved in cellulose degradation
0.08%
10.7
Mycobacterium
RISB1156
Nicrophorus concolor
Order: Coleoptera
produces Antimicrobial compounds
0.06%
10.7
Kluyvera
RISB1064
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.16%
10.4
Lysinibacillus
RISB1066
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.08%
10.3
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
0.16%
10.2
Candidatus Hamiltonella defensa
RISB1049
Aphis gossypii
Order: Hemiptera
secondary symbiont reduction led to reduction of the total life span and intrinsic rate of natural increase as well as appearance of the deformed dead offspring. H. defensa and Arsenophonus contributed to the fitness of A. gossypii by enhancing its performance, but not through parasitoid resistance.
0.13%
10.1
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
0.16%
9.9
Candidatus Hamiltonella defensa
RISB1296
Sitobion miscanthi
Order: Hemiptera
Increase the reproductive capacity of wheat aphids, increase the number of offspring and reduce the age of first breeding, suppressed the salicylic acid (SA)- and jasmonic acid (JA)-related defense pathways and SA/JA accumulation
0.13%
9.7
Stenotrophomonas maltophilia
RISB1122
Bombyx mori
Order: Lepidoptera
facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.
0.60%
9.6
Sodalis glossinidius
RISB2256
Glossina palpalis
Order: Diptera
flies harbouring this symbiont have three times greater probability of being infected by trypanosomes than flies without the symbiont.
1.64%
9.3
Candidatus Hamiltonella defensa
RISB0630
Acyrthosiphon pisum
Order: Hemiptera
In response to ladybirds, symbiont-infected pea aphids exhibited proportionately fewer evasive defences (dropping and walking away) than non-infected (cured) pea aphids, but more frequent aggressive kicking
0.13%
9.3
Staphylococcus xylosus
RISB2497
Anticarsia gemmatalis
Order: Lepidoptera
allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean
0.04%
9.0
Buchnera aphidicola
RISB0685
Acyrthosiphon pisum
Order: Hemiptera
It supplies the host with vitamins and essential amino acids, such as arginine and methionine that aphids cannot synthesize or derive insufficiently from their diet, the phloem sap of plants
0.16%
9.0
Stenotrophomonas maltophilia
RISB1227
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.60%
8.3
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
0.25%
8.2
Sodalis glossinidius
RISB2471
Glossina morsitans
Order: Diptera
retains a thiamine ABC transporter (tbpAthiPQ) believed to salvage thiamine
1.64%
8.1
Escherichia coli
RISB2120
Galleria mellonella
Order: Lepidoptera
mediate trans-generational immune priming
1.96%
7.8
Agrobacterium tumefaciens
RISB0650
Melanaphis bambusae
Order: Hemiptera
None
2.31%
7.3
Leclercia adecarboxylata
RISB1757
Spodoptera frugiperda
Order: Lepidoptera
degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn
0.18%
7.0
Staphylococcus xylosus
RISB2247
Anticarsia gemmatalis
Order: Lepidoptera
mitigation of the negative effects of proteinase inhibitors produced by the host plant
0.04%
6.8
Leclercia adecarboxylata
RISB1758
Spodoptera frugiperda
Order: Lepidoptera
may influence the metabolization of pesticides in insects
0.18%
6.3
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
0.25%
6.0
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
0.91%
5.9
Arsenophonus nasoniae
RISB0428
Nasonia vitripennis
Order: Hymenoptera
male killing
0.59%
5.8
Cedecea lapagei
RISB1570
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.04%
5.8
Erwinia sp. E602
RISB1986
Bombyx mori
Order: Lepidoptera
producing cellulase and amylase
0.09%
5.7
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
0.25%
5.7
Arsenophonus nasoniae
RISB0366
Pachycrepoideus vindemmiae
Order: Hymenoptera
None
0.59%
5.6
Pectobacterium carotovorum
RISB1772
Muscidae
Order: Diptera
None
0.40%
5.4
Deinococcus
RISB1649
Camponotus japonicus
Order: Hymenoptera
Four new aminoglycolipids, deinococcucins A–D, were discovered from a Deinococcus sp. strain isolated from the gut of queen carpenter ants, Camponotus japonicus, showed functional ability of inducing the quinone reductase production in host cells
0.27%
5.2
Yersinia massiliensis
RISB0407
Anaphes nitens
Order: Hymenoptera
None
0.17%
5.2
Candidatus Karelsulcia muelleri
RISB1591
Philaenus spumarius
Order: Hemiptera
None
0.13%
5.1
Trabulsiella
RISB2201
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.08%
5.1
Paenibacillus
RISB2195
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.06%
5.1
Erwinia amylovora
RISB0403
Anaphes nitens
Order: Hymenoptera
None
0.05%
5.1
Pseudocitrobacter corydidari
RISB0696
Corydidarum magnifica
Order: Blattodea
None
0.05%
5.1
Cedecea lapagei
RISB0504
Plutella xylostella
Order: Lepidoptera
None
0.04%
5.0
Clostridium
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.46%
4.7
Paenibacillus
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.06%
3.3
Dickeya
RISB1086
Rhodnius prolixus
Order: Hemiptera
supply enzymatic biosynthesis of B-complex vitamins
2.04%
3.1
Shewanella
RISB1924
Anopheles gambiae
Order: Diptera
may be related with mediating adaptation to different ecological niches or in shaping specific adult behaviors including mating
0.28%
2.8
Psychrobacter
RISB1773
Calliphoridae
Order: Diptera
it shows physiological adaptation to survival in warmer temperatures and has been previously associated with food spoilage
0.05%
2.5
Delftia
RISB0083
Osmia cornifrons
Order: Hymenoptera
be known to exhibit antibiotic activity, suggesting their potential protective role against pathogens
0.41%
2.4
Proteus
RISB2315
Aedes aegypti
Order: Diptera
upregulates AMP gene expression, resulting in suppression of DENV infection in the mosquito gut epithelium
0.09%
2.2
Streptococcus
RISB2625
Galleria mellonella
Order: Lepidoptera
suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme
0.09%
2.1
Cupriavidus
RISB0694
Alydus tomentosus
Order: Hemiptera
None
2.02%
2.0
Streptococcus
RISB2624
Reticulitermes flavipes
Order: Blattodea
can be broken down into substances such as carbon dioxide, ammonia and acetic acid
0.09%
1.7
Delftia
RISB1754
Spodoptera frugiperda
Order: Lepidoptera
may influence the metabolization of pesticides in insects
0.41%
1.6
Clostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.46%
1.5
Streptococcus
RISB2604
Homona magnanima
Order: Lepidoptera
influence the growth of Bacillus thuringiensis in the larvae
0.09%
1.3
Proteus
RISB2460
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.09%
1.1
Lysinibacillus
RISB1416
Psammotermes hypostoma
Order: Blattodea
isolates showed significant cellulolytic activity
0.08%
1.1
Achromobacter
RISB1869
Aedes aegypti
Order: Diptera
gut microbiome
0.53%
0.8
Achromobacter
RISB0383
Aphis gossypii
Order: Hemiptera
None
0.53%
0.5
Clostridium
RISB1959
Pyrrhocoridae
Order: Hemiptera
None
0.46%
0.5
Flavobacterium
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
0.41%
0.4
Halomonas
RISB1374
Bemisia tabaci
Order: Hemiptera
None
0.26%
0.3
Lonsdalea
RISB1321
Vespa mandarinia
Order: Hymenoptera
None
0.11%
0.1
Gibbsiella
RISB1320
Vespa mandarinia
Order: Hymenoptera
None
0.10%
0.1
Helicobacter
RISB0662
Melanaphis bambusae
Order: Hemiptera
None
0.07%
0.1
Myroides
RISB0626
Musca altica
Order: Diptera
None
0.05%
0.1

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