SRR27609053 - Bombus impatiens
Basic Information
Run: SRR27609053
Assay Type: WGS
Bioproject: PRJNA1066198
Biosample: SAMN39482741
Bytes: 61702998
Center Name: UNIVERSITY OF OTTAWA
Sequencing Information
Instrument: Illumina NovaSeq 6000
Library Layout: PAIRED
Library Selection: RANDOM
Platform: ILLUMINA
Geographic Information
Country: Canada
Continent: North America
Location Name: Canada: Ottawa
Latitude/Longitude: 45.42141677 N 75.68148579 W
Sample Information
Host: Bombus impatiens
Isolation: gut
Biosample Model: Metagenome or environmental
Collection Date: 2021-05-27
Taxonomic Classification
Potential Symbionts
About Potential Symbionts
This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:
- Relative abundance in the sample
- Species-level matches with known symbionts
- Host insect order matches with reference records
- Completeness and richness of functional records
Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:
- Relative abundance in sample
- Species-level matches with known symbionts
- Host insect order matches
- Functional record completeness
Note: Showing top 3 highest scoring records for each species/genus
| Symbiont Name | Record | Host Species | Function | Abundance |
Score
Score Composition:
Higher scores indicate stronger symbiotic relationship potential |
|---|---|---|---|---|---|
|
Bosea
|
RISB1702 |
Phlebotomus papatasi
Order: Diptera
|
None
|
84.81% |
84.8
|
|
Nostoc
|
RISB0812 |
Hypothenemus hampei
Order: Coleoptera
|
might contribute to caffeine breakdown using the C-18 oxidation pathway
|
15.19% |
16.6
|
Download Files
Taxonomic Analysis Files
Assembly & Gene Prediction
Raw Sequencing Files
Direct download from NCBI SRARaw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.