SRR27609039 - Bombus impatiens
Basic Information
Run: SRR27609039
Assay Type: WGS
Bioproject: PRJNA1066198
Biosample: SAMN39482754
Bytes: 80969101
Center Name: UNIVERSITY OF OTTAWA
Sequencing Information
Instrument: Illumina NovaSeq 6000
Library Layout: PAIRED
Library Selection: RANDOM
Platform: ILLUMINA
Geographic Information
Country: Canada
Continent: North America
Location Name: Canada: Ottawa
Latitude/Longitude: 45.42141677 N 75.68148579 W
Sample Information
Host: Bombus impatiens
Isolation: gut
Biosample Model: Metagenome or environmental
Collection Date: 2021-05-27
Taxonomic Classification
Potential Symbionts
About Potential Symbionts
This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:
- Relative abundance in the sample
- Species-level matches with known symbionts
- Host insect order matches with reference records
- Completeness and richness of functional records
Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:
- Relative abundance in sample
- Species-level matches with known symbionts
- Host insect order matches
- Functional record completeness
Note: Showing top 3 highest scoring records for each species/genus
| Symbiont Name | Record | Host Species | Function | Abundance |
Score
Score Composition:
Higher scores indicate stronger symbiotic relationship potential |
|---|---|---|---|---|---|
|
Bifidobacterium
Host Order Match
|
RISB0174 |
Apis mellifera
Order: Hymenoptera
|
Bifidobacterium provides complementary demethylation service to promote Gilliamella growth on methylated homogalacturonan, an enriched polysaccharide of pectin. In exchange, Gilliamella shares digestive products with Bifidobacterium, through which a positive interaction is established
|
49.65% |
64.7
|
|
Bifidobacterium
Host Order Match
|
RISB1944 |
Apis cerana
Order: Hymenoptera
|
None
|
49.65% |
59.7
|
|
Bifidobacterium
|
RISB0616 |
Spodoptera frugiperda
Order: Lepidoptera
|
Strain wkB204 grew in the presence of amygdalin as the sole carbon source, suggesting that this strain degrades amygdalin and is not susceptible to the potential byproducts
|
49.65% |
53.1
|
|
Snodgrassella
Host Order Match
|
RISB1423 |
Bombus spp.
Order: Hymenoptera
|
The bumble bee microbiome slightly increases survivorship when the host is exposed to selenate
|
27.37% |
39.3
|
|
Snodgrassella
Host Order Match
|
RISB1947 |
Apis cerana
Order: Hymenoptera
|
None
|
27.37% |
37.4
|
|
Bosea
|
RISB1702 |
Phlebotomus papatasi
Order: Diptera
|
None
|
20.28% |
20.3
|
|
Nostoc
|
RISB0812 |
Hypothenemus hampei
Order: Coleoptera
|
might contribute to caffeine breakdown using the C-18 oxidation pathway
|
2.70% |
4.1
|
Download Files
Taxonomic Analysis Files
Assembly & Gene Prediction
Raw Sequencing Files
Direct download from NCBI SRARaw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.