SRR27609038 - Bombus impatiens

Basic Information

Run: SRR27609038

Assay Type: WGS

Bioproject: PRJNA1066198

Biosample: SAMN39482755

Bytes: 65339346

Center Name: UNIVERSITY OF OTTAWA

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: Canada

Continent: North America

Location Name: Canada: Ottawa

Latitude/Longitude: 45.42141677 N 75.68148579 W

Sample Information

Host: Bombus impatiens

Isolation: gut

Biosample Model: Metagenome or environmental

Collection Date: 2021-05-27

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Snodgrassella Host Order Match	RISB1423	Bombus spp. Order: Hymenoptera	The bumble bee microbiome slightly increases survivorship when the host is exposed to selenate	49.65%	61.5
Snodgrassella Host Order Match	RISB1947	Apis cerana Order: Hymenoptera	None	49.65%	59.7
Bifidobacterium Host Order Match	RISB0174	Apis mellifera Order: Hymenoptera	Bifidobacterium provides complementary demethylation service to promote Gilliamella growth on methylated homogalacturonan, an enriched polysaccharide of pectin. In exchange, Gilliamella shares digestive products with Bifidobacterium, through which a positive interaction is established	35.73%	50.7
Bifidobacterium Host Order Match	RISB1944	Apis cerana Order: Hymenoptera	None	35.73%	45.7
Bifidobacterium	RISB0616	Spodoptera frugiperda Order: Lepidoptera	Strain wkB204 grew in the presence of amygdalin as the sole carbon source, suggesting that this strain degrades amygdalin and is not susceptible to the potential byproducts	35.73%	39.2
Lactobacillus Host Order Match	RISB0639	Formica Order: Hymenoptera	exhibited abilities in catabolizing sugars (sucrose, trehalose, melezitose and raffinose) known to be constituents of hemipteran honeydew	3.54%	16.3
Lactobacillus Host Order Match	RISB0529	Apis cerana Order: Hymenoptera	LAB produce organic acids, known as anti-microbial metabolites, inhibiting the growth of spoilage and pathogenic microorganisms	3.54%	16.1
Lactobacillus Host Order Match	RISB0475	Apis mellifera Order: Hymenoptera	A. kunkeei alleviated acetamiprid-induced symbiotic microbiota dysregulation and mortality in honeybees	3.54%	15.6
Bosea	RISB1702	Phlebotomus papatasi Order: Diptera	None	9.38%	9.4
Nostoc	RISB0812	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-18 oxidation pathway	1.70%	3.1