SRR26511508 - Thaumetopoea processionea

Basic Information

Run: SRR26511508

Assay Type: WGS

Bioproject: PRJNA1010135

Biosample: SAMN37977079

Bytes: 2144514084

Center Name: JULIUS KUEHN-INSTITUT

Sequencing Information

Instrument: MinION

Library Layout: SINGLE

Library Selection: RANDOM

Platform: OXFORD_NANOPORE

Geographic Information

Country: Germany

Continent: Europe

Location Name: Germany: Waldlaubersheim\, Rhineland-Palatinate

Latitude/Longitude: -

Sample Information

Host: Thaumetopoea processionea

Isolation: bioassay control larva 1

Biosample Model: Metagenome or environmental

Collection Date: 2023-05-13

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Escherichia coli Species-level Match Host Order Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	50.94%	70.3
Escherichia coli Species-level Match Host Order Match	RISB2120	Galleria mellonella Order: Lepidoptera	mediate trans-generational immune priming	50.94%	66.8
Escherichia coli Species-level Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	50.94%	58.7
Bacillus thuringiensis Species-level Match Host Order Match	RISB0109	Tuta absoluta Order: Lepidoptera	Individual exposure of B. thuringiensis isolates to P. absoluta revealed high susceptibility of the pest and could potentially be used to develop effective, safe and affordable microbial pesticides for the management of P. absoluta.	2.74%	22.4
Bacillus sp. 7D3 Species-level Match Host Order Match	RISB2181	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	2.14%	22.1
Bacillus thuringiensis Species-level Match Host Order Match	RISB1863	Spodoptera littoralis Order: Lepidoptera	a widely used bacterial entomopathogen producing insecticidal toxins, some of which are expressed in insect-resistant transgenic crops	2.74%	20.4
Klebsiella pneumoniae Species-level Match Host Order Match	RISB2185	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.26%	20.3
Stenotrophomonas maltophilia Species-level Match Host Order Match	RISB1122	Bombyx mori Order: Lepidoptera	facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.	0.30%	19.3
Staphylococcus xylosus Species-level Match Host Order Match	RISB2497	Anticarsia gemmatalis Order: Lepidoptera	allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean	0.22%	19.2
Mammaliicoccus sciuri Species-level Match Host Order Match	RISB0075	Bombyx mori Order: Lepidoptera	could produce a secreted chitinolytic lysozyme (termed Msp1) to damage fungal cell walls，completely inhibit the spore germination of fungal entomopathogens Metarhizium robertsii and Beauveria bassiana	0.20%	19.2
Wolbachia Host Order Match	RISB0263	Homona magnanima Order: Lepidoptera	To achieve Male killing (MK), Wolbachia impaired the host dosage compensation system and triggered abnormal apoptosis in male embryos.Also, disrupted the sex-determination cascade of males by inducing female-type splice variants of doublesex (dsx), a downstream regulator of the sex-determining gene cascade.	2.85%	17.9
Wolbachia Host Order Match	RISB2547	Eurema hecabe Order: Lepidoptera	the butterfly Eurema hecabe is infected with two different strains (wHecCI2 and wHecFem2) of the bacterial endosymbiont Wolbachia, genetic males are transformed into functional females, resulting in production of all-female broods.	2.85%	17.5
Enterococcus faecalis Species-level Match Host Order Match	RISB0727	Bombyx mori Order: Lepidoptera	with anti-N. bombycis activity might play an important role in protecting silkworms from microsporidia	0.39%	17.4
Sphingomonas sp. IC081 Species-level Match Host Order Match	RISB0134	Spodoptera frugiperda Order: Lepidoptera	provide a protective effect to against chlorantraniliprole stress to S. frugiperda	0.47%	17.1
Staphylococcus xylosus Species-level Match Host Order Match	RISB2247	Anticarsia gemmatalis Order: Lepidoptera	mitigation of the negative effects of proteinase inhibitors produced by the host plant	0.22%	16.9
Stenotrophomonas maltophilia Species-level Match Host Order Match	RISB1123	Bombyx mori Order: Lepidoptera	confer a significant fitness advantage via nutritional (amino acids) upgrading	0.30%	16.9
Enterococcus faecalis Species-level Match Host Order Match	RISB0026	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	0.39%	16.5
Pseudomonas sp. CIP-10 Species-level Match Host Order Match	RISB0286	Diatraea saccharalis Order: Lepidoptera	associated with cellulose degradation	0.67%	16.4
Staphylococcus xylosus Species-level Match Host Order Match	RISB2246	Anticarsia gemmatalis Order: Lepidoptera	Against plant-derived protease inhibitor; pest control	0.22%	16.3
Klebsiella pneumoniae Species-level Match Host Order Match	RISB2459	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.26%	16.3
Pseudomonas sp. CIP-10 Species-level Match Host Order Match	RISB0785	Samia ricini Order: Lepidoptera	cellulolytic activity	0.67%	16.1
Stenotrophomonas maltophilia Species-level Match Host Order Match	RISB1998	Diatraea saccharalis Order: Lepidoptera	possess cellulose degrading activity	0.30%	16.0
Wolbachia Host Order Match	RISB2473	Phyllonorycter blancardella Order: Lepidoptera	P. blancardella relies on bacterial endosymbionts (possibly Wolbachia) to manipulate the physiology of its host plant, resulting in the green-island phenotype	2.85%	16.0
Buchnera aphidicola Species-level Match Host Order Match	RISB0290	Helicoverpa armigera Order: Lepidoptera	None	1.00%	16.0
Klebsiella pneumoniae Species-level Match Host Order Match	RISB1994	Diatraea saccharalis Order: Lepidoptera	possess cellulose degrading activity	0.26%	16.0
Pseudomonas sp. HOU2 Species-level Match Host Order Match	RISB0286	Diatraea saccharalis Order: Lepidoptera	associated with cellulose degradation	0.18%	15.9
Francisella Host Order Match	RISB1907	Bombyx mori Order: Lepidoptera	After infection with F. tularensis, the induction of melanization and nodulation, which are immune responses to bacterial infection, were inhibited in silkworms. Pre-inoculation of silkworms with F. tularensis enhanced the expression of antimicrobial peptides and resistance to infection by pathogenic bacteria.	0.27%	15.3
Acinetobacter Host Order Match	RISB1500	Lymantria dispar Order: Lepidoptera	Bacteria isolated from a host plant had a glycoside-degrading activity, which enhanced growth of the moth when larvae were fed on a toxin-containing diet	0.80%	13.9
Acinetobacter Host Order Match	RISB0390	Chilo suppressalis Order: Lepidoptera	interfere with plant anti-herbivore defense and avoid fully activating the JA-regulated antiherbivore defenses of rice plants	0.80%	13.3
Acinetobacter Host Order Match	RISB0731	Lymantria dispar Order: Lepidoptera	Condensed tannins improved growth of Acinetobacter sp. by 15% (by measuring the optical density)	0.80%	12.7
Streptococcus Host Order Match	RISB2625	Galleria mellonella Order: Lepidoptera	suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme	0.54%	12.6
Bacteroides Host Order Match	RISB0090	Hyphantria cunea Order: Lepidoptera	enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.	0.42%	12.5
Streptococcus Host Order Match	RISB2604	Homona magnanima Order: Lepidoptera	influence the growth of Bacillus thuringiensis in the larvae	0.54%	11.7
Paraclostridium Host Order Match	RISB0028	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	0.47%	11.5
Proteus Host Order Match	RISB2460	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.28%	11.3
Buchnera aphidicola Species-level Match	RISB0236	Acyrthosiphon pisum Order: Hemiptera	Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival	1.00%	11.0
Priestia Host Order Match	RISB0839	Helicoverpa armigera Order: Lepidoptera	producing amylase	0.54%	10.9
Buchnera aphidicola Species-level Match	RISB2485	Macrosiphum euphorbiae Order: Hemiptera	symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance	1.00%	10.8
Lactococcus lactis Species-level Match	RISB0131	Ceratitis capitata Order: Diptera	The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.	0.52%	10.5
Streptomyces sp. T12 Species-level Match	RISB0943	Polybia plebeja Order: Hymenoptera	this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans	1.55%	10.5
Streptomyces sp. T12 Species-level Match	RISB2334	Sirex noctilio Order: Hymenoptera	degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide	1.55%	10.3
Clostridium sp. DL-VIII Species-level Match	RISB2301	Pyrrhocoris apterus Order: Hemiptera	could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet	0.23%	9.5
Streptomyces sp. SJL17-4 Species-level Match	RISB0943	Polybia plebeja Order: Hymenoptera	this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans	0.30%	9.3
Lactococcus lactis Species-level Match	RISB0967	Oulema melanopus Order: Coleoptera	contribute to the decomposition of complex carbohydrates, fatty acids, or polysaccharides in the insect gut. It might also contribute to the improvement of nutrient availability.	0.52%	9.1
Blattabacterium cuenoti Species-level Match	RISB0133	Panesthiinae Order: Blattodea	enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life	0.74%	8.7
Lactococcus lactis Species-level Match	RISB0113	Bactrocera dorsalis Order: Diptera	increase the resistance of B. dorsalis to β-cypermethrin by regulating cytochrome P450 (P450) enzymes and α-glutathione S-transferase (GST) activities	0.52%	8.5
Enterococcus faecalis Species-level Match	RISB0497	Cryptolestes ferrugineus Order: Coleoptera	bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.	0.39%	8.0
Blattabacterium cuenoti Species-level Match	RISB0518	Cryptocercus punctulatus Order: Blattodea	collaborative arginine biosynthesis	0.74%	6.4
Blattabacterium cuenoti Species-level Match	RISB0093	Blattella germanica Order: Blattodea	obligate endosymbiont	0.74%	6.2
Candidatus Erwinia haradaeae Species-level Match	RISB1632	Lachninae Order: Hemiptera	None	0.24%	5.2
Salmonella enterica Species-level Match	RISB0413	Melanaphis sacchari Order: Hemiptera	None	0.22%	5.2
Treponema	RISB2377	termite Order: Blattodea	when grown together, two termite-gut Treponema species influence each other's gene expression in a far more comprehensive and nuanced manner than might have been predicted based on the results of previous studies on the respective pure cultures	0.30%	5.2
Proteus	RISB0001	Leptinotarsa decemlineata Order: Coleoptera	produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation	0.28%	3.0
Rhizobium	RISB0135	Coccinella septempunctata Order: Coleoptera	be commonly found in plant roots and they all have nitrogen fixation abilities	1.19%	2.8
Bacteroides	RISB0256	Leptocybe invasa Order: Hymenoptera	Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa	0.42%	2.7
Bacteroides	RISB1183	Oryzaephilus surinamensis Order: Coleoptera	supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host	0.42%	2.5
Proteus	RISB2315	Aedes aegypti Order: Diptera	upregulates AMP gene expression, resulting in suppression of DENV infection in the mosquito gut epithelium	0.28%	2.4
Streptococcus	RISB2624	Reticulitermes flavipes Order: Blattodea	can be broken down into substances such as carbon dioxide, ammonia and acetic acid	0.54%	2.2
Vibrio	RISB1810	Monochamus galloprovincialis Order: Coleoptera	Have the ability for degradation of cellulose, proteins and starch	0.69%	2.0
Chryseobacterium	RISB2092	Aedes aegypti Order: Diptera	axenic larvae cannot develop	0.84%	1.4
Cupriavidus	RISB0694	Alydus tomentosus Order: Hemiptera	None	1.32%	1.3
Chryseobacterium	RISB1874	Aedes aegypti Order: Diptera	gut microbiome	0.84%	1.1
Mycobacterium	RISB1156	Nicrophorus concolor Order: Coleoptera	produces Antimicrobial compounds	0.25%	0.9
Chryseobacterium	RISB0015	Aedes aegypti Order: Diptera	None	0.84%	0.8
Flavobacterium	RISB0659	Melanaphis bambusae Order: Hemiptera	None	0.83%	0.8
Treponema	RISB0169	Reticulitermes flaviceps Order: Blattodea	None	0.30%	0.3
Helicobacter	RISB0662	Melanaphis bambusae Order: Hemiptera	None	0.29%	0.3
Legionella	RISB1687	Polyplax serrata Order: Phthiraptera	None	0.15%	0.2