SRR26511505 - Thaumetopoea processionea

Basic Information

Run: SRR26511505

Assay Type: WGS

Bioproject: PRJNA1010135

Biosample: SAMN37977082

Bytes: 1150414301

Center Name: JULIUS KUEHN-INSTITUT

Sequencing Information

Instrument: MinION

Library Layout: SINGLE

Library Selection: RANDOM

Platform: OXFORD_NANOPORE

Geographic Information

Country: Germany

Continent: Europe

Location Name: Germany: Waldlaubersheim\, Rhineland-Palatinate

Latitude/Longitude: -

Sample Information

Host: Thaumetopoea processionea

Isolation: bioassay Bw treated larva 2

Biosample Model: Metagenome or environmental

Collection Date: 2023-05-18

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Escherichia coli Species-level Match Host Order Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	61.22%	80.5
Escherichia coli Species-level Match Host Order Match	RISB2120	Galleria mellonella Order: Lepidoptera	mediate trans-generational immune priming	61.22%	77.0
Escherichia coli Species-level Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	61.22%	68.9
Bacillus thuringiensis Species-level Match Host Order Match	RISB0109	Tuta absoluta Order: Lepidoptera	Individual exposure of B. thuringiensis isolates to P. absoluta revealed high susceptibility of the pest and could potentially be used to develop effective, safe and affordable microbial pesticides for the management of P. absoluta.	2.62%	22.3
Bacillus sp. 7D3 Species-level Match Host Order Match	RISB2181	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	1.43%	21.4
Wolbachia Host Order Match	RISB0263	Homona magnanima Order: Lepidoptera	To achieve Male killing (MK), Wolbachia impaired the host dosage compensation system and triggered abnormal apoptosis in male embryos.Also, disrupted the sex-determination cascade of males by inducing female-type splice variants of doublesex (dsx), a downstream regulator of the sex-determining gene cascade.	6.15%	21.2
Wolbachia Host Order Match	RISB2547	Eurema hecabe Order: Lepidoptera	the butterfly Eurema hecabe is infected with two different strains (wHecCI2 and wHecFem2) of the bacterial endosymbiont Wolbachia, genetic males are transformed into functional females, resulting in production of all-female broods.	6.15%	20.8
Klebsiella pneumoniae Species-level Match Host Order Match	RISB2185	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.32%	20.3
Bacillus thuringiensis Species-level Match Host Order Match	RISB1863	Spodoptera littoralis Order: Lepidoptera	a widely used bacterial entomopathogen producing insecticidal toxins, some of which are expressed in insect-resistant transgenic crops	2.62%	20.3
Stenotrophomonas maltophilia Species-level Match Host Order Match	RISB1122	Bombyx mori Order: Lepidoptera	facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.	0.74%	19.7
Wolbachia Host Order Match	RISB2473	Phyllonorycter blancardella Order: Lepidoptera	P. blancardella relies on bacterial endosymbionts (possibly Wolbachia) to manipulate the physiology of its host plant, resulting in the green-island phenotype	6.15%	19.3
Stenotrophomonas maltophilia Species-level Match Host Order Match	RISB1123	Bombyx mori Order: Lepidoptera	confer a significant fitness advantage via nutritional (amino acids) upgrading	0.74%	17.3
Stenotrophomonas maltophilia Species-level Match Host Order Match	RISB1998	Diatraea saccharalis Order: Lepidoptera	possess cellulose degrading activity	0.74%	16.5
Pseudomonas sp. CIP-10 Species-level Match Host Order Match	RISB0286	Diatraea saccharalis Order: Lepidoptera	associated with cellulose degradation	0.63%	16.4
Klebsiella pneumoniae Species-level Match Host Order Match	RISB2459	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.32%	16.3
Clostridium Host Order Match	RISB0028	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	5.26%	16.3
Staphylococcus Host Order Match	RISB1545	Bombyx mori Order: Lepidoptera	Staphyloxanthin pigment from gut symbiont presented considerable biological properties including in vitro antimicrobial activity against pathogens Staphylococcus aureus, Escherichia coli and Candida albicans; in vitro antioxidant activity by % DPPH free radical scavenging activity	1.29%	16.3
Pseudomonas sp. CIP-10 Species-level Match Host Order Match	RISB0785	Samia ricini Order: Lepidoptera	cellulolytic activity	0.63%	16.1
Klebsiella pneumoniae Species-level Match Host Order Match	RISB1994	Diatraea saccharalis Order: Lepidoptera	possess cellulose degrading activity	0.32%	16.0
Buchnera aphidicola Species-level Match Host Order Match	RISB0290	Helicoverpa armigera Order: Lepidoptera	None	0.75%	15.8
Staphylococcus Host Order Match	RISB2497	Anticarsia gemmatalis Order: Lepidoptera	allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean	1.29%	15.3
Acinetobacter Host Order Match	RISB1500	Lymantria dispar Order: Lepidoptera	Bacteria isolated from a host plant had a glycoside-degrading activity, which enhanced growth of the moth when larvae were fed on a toxin-containing diet	0.55%	13.6
Acinetobacter Host Order Match	RISB0390	Chilo suppressalis Order: Lepidoptera	interfere with plant anti-herbivore defense and avoid fully activating the JA-regulated antiherbivore defenses of rice plants	0.55%	13.1
Staphylococcus Host Order Match	RISB2247	Anticarsia gemmatalis Order: Lepidoptera	mitigation of the negative effects of proteinase inhibitors produced by the host plant	1.29%	13.0
Bacteroides Host Order Match	RISB0090	Hyphantria cunea Order: Lepidoptera	enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.	0.47%	12.6
Acinetobacter Host Order Match	RISB0731	Lymantria dispar Order: Lepidoptera	Condensed tannins improved growth of Acinetobacter sp. by 15% (by measuring the optical density)	0.55%	12.5
Streptomyces sp. T12 Species-level Match	RISB0943	Polybia plebeja Order: Hymenoptera	this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans	2.77%	11.7
Proteus Host Order Match	RISB2460	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.70%	11.7
Streptomyces sp. T12 Species-level Match	RISB2334	Sirex noctilio Order: Hymenoptera	degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide	2.77%	11.5
Paraclostridium Host Order Match	RISB0028	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	0.28%	11.3
Buchnera aphidicola Species-level Match	RISB0236	Acyrthosiphon pisum Order: Hemiptera	Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival	0.75%	10.8
Priestia Host Order Match	RISB0839	Helicoverpa armigera Order: Lepidoptera	producing amylase	0.37%	10.7
Buchnera aphidicola Species-level Match	RISB2485	Macrosiphum euphorbiae Order: Hemiptera	symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance	0.75%	10.5
Pseudomonas sp. CIP-10 Species-level Match	RISB1622	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.63%	10.5
Streptomyces sp. T12 Species-level Match	RISB1134	mud dauber wasp Order: Hymenoptera	secondary metabolites derived from a Streptomyces sp. displayed significant inhibitory activity against hexokinase II	2.77%	10.1
Clostridium	RISB2301	Pyrrhocoris apterus Order: Hemiptera	could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet	5.26%	9.5
Blattabacterium cuenoti Species-level Match	RISB0133	Panesthiinae Order: Blattodea	enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life	1.30%	9.2
Blattabacterium cuenoti Species-level Match	RISB0518	Cryptocercus punctulatus Order: Blattodea	collaborative arginine biosynthesis	1.30%	7.0
Serratia proteamaculans Species-level Match	RISB1846	Dendroctonus adjunctus Order: Coleoptera	display strong cellulolytic activity and process a single endoglucanase encoding gene	0.23%	6.9
Blattabacterium cuenoti Species-level Match	RISB0093	Blattella germanica Order: Blattodea	obligate endosymbiont	1.30%	6.7
Rahnella	RISB1623	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.47%	5.3
Clostridium	RISB1959	Pyrrhocoridae Order: Hemiptera	None	5.26%	5.3
Candidatus Erwinia haradaeae Species-level Match	RISB1632	Lachninae Order: Hemiptera	None	0.20%	5.2
Treponema	RISB2377	termite Order: Blattodea	when grown together, two termite-gut Treponema species influence each other's gene expression in a far more comprehensive and nuanced manner than might have been predicted based on the results of previous studies on the respective pure cultures	0.27%	5.2
Xanthomonas	RISB0498	Xylocopa appendiculata Order: Hymenoptera	Xanthomonas strain from Japanese carpenter bee is effective PU-degradable bacterium and is able to use polyacryl-based PU as a nutritional source, as well as other types of PS-PU and PE-PU	0.28%	4.0
Proteus	RISB0001	Leptinotarsa decemlineata Order: Coleoptera	produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation	0.70%	3.4
Proteus	RISB2315	Aedes aegypti Order: Diptera	upregulates AMP gene expression, resulting in suppression of DENV infection in the mosquito gut epithelium	0.70%	2.8
Bacteroides	RISB0256	Leptocybe invasa Order: Hymenoptera	Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa	0.47%	2.8
Rahnella	RISB1800	Dendroctonus valens Order: Coleoptera	could alleviate or compromise the antagonistic effects of fungi O. minus and L. procerum on RTB larval growth	0.47%	2.7
Rahnella	RISB0741	Dendroctonus ponderosae Order: Coleoptera	R. aquatilis decreased (−)-α-pinene (38%) and (+)-α-pinene (46%) by 40% and 45% (by GC-MS), respectively	0.47%	2.6
Bacteroides	RISB1183	Oryzaephilus surinamensis Order: Coleoptera	supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host	0.47%	2.5
Lactiplantibacillus	RISB1465	Drosophila melanogaster Order: Diptera	L. plantarum increases its growth-promotion ability by adapting to Drosophila diet	0.85%	2.5
Xanthomonas	RISB0217	Xylocopa appendiculata Order: Hymenoptera	strains biodegraded polyethylene terephthalate PET powder, broke it into its degradation products	0.28%	2.2
Lactiplantibacillus	RISB0674	Drosophila melanogaster Order: Diptera	could effectively inhibit fungal spore germinations	0.85%	1.9
Vibrio	RISB1810	Monochamus galloprovincialis Order: Coleoptera	Have the ability for degradation of cellulose, proteins and starch	0.47%	1.8
Peribacillus	RISB1877	Aedes aegypti Order: Diptera	gut microbiome	0.98%	1.3
Cupriavidus	RISB0694	Alydus tomentosus Order: Hemiptera	None	1.00%	1.0
Lactiplantibacillus	RISB0608	Drosophila melanogaster Order: Diptera	None	0.85%	0.9
Helicobacter	RISB0662	Melanaphis bambusae Order: Hemiptera	None	0.29%	0.3
Treponema	RISB0169	Reticulitermes flaviceps Order: Blattodea	None	0.27%	0.3