SRR26511504 - Thaumetopoea processionea

Basic Information

Run: SRR26511504

Assay Type: WGS

Bioproject: PRJNA1010135

Biosample: SAMN37977083

Bytes: 587275473

Center Name: JULIUS KUEHN-INSTITUT

Sequencing Information

Instrument: MinION

Library Layout: SINGLE

Library Selection: RANDOM

Platform: OXFORD_NANOPORE

Geographic Information

Country: Germany

Continent: Europe

Location Name: Germany: Waldlaubersheim\, Rhineland-Palatinate

Latitude/Longitude: -

Sample Information

Host: Thaumetopoea processionea

Isolation: bioassay Bw treated larva 3

Biosample Model: Metagenome or environmental

Collection Date: 2023-05-15

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Serratia proteamaculans Species-level Match	RISB1846	Dendroctonus adjunctus Order: Coleoptera	display strong cellulolytic activity and process a single endoglucanase encoding gene	58.83%	65.5
Pantoea agglomerans Species-level Match Host Order Match	RISB2198	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.89%	20.9
Serratia marcescens Species-level Match Host Order Match	RISB2200	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.71%	20.7
Serratia marcescens Species-level Match Host Order Match	RISB0477	Spodoptera litura Order: Lepidoptera	The ingestion of bacteria negatively affected the development and nutritional physiology of insect. The bacteria after successful establishment started degrading the gut wall and invaded the haemocoel thereby causing the death of the host.	0.71%	20.5
Klebsiella pneumoniae Species-level Match Host Order Match	RISB2185	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.13%	20.1
Pantoea sp. SOD02 Species-level Match Host Order Match	RISB0300	Eumaeus atala Order: Lepidoptera	suggesting the occurrence of an unprecedented desferrioxamine-like biosynthetic pathway,including desferrioxamine B, which may help tolerating diets rich in azoxyglycosides, BMAA, and other cycad toxins, including a possible role for bacterial siderophores	0.08%	20.1
Escherichia coli Species-level Match Host Order Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	0.61%	19.9
Pantoea ananatis Species-level Match Host Order Match	RISB1671	Spodoptera frugiperda Order: Lepidoptera	modulate plant defense, downregulated the activity of the plant defensive proteins polyphenol oxidase and trypsin proteinase inhibitors (trypsin PI) but upregulated peroxidase (POX) activity in tomatoresponses	0.07%	19.3
Pseudomonas sp. ADAK22 Species-level Match Host Order Match	RISB0286	Diatraea saccharalis Order: Lepidoptera	associated with cellulose degradation	2.39%	18.1
Pseudomonas sp. LBUM920 Species-level Match Host Order Match	RISB0286	Diatraea saccharalis Order: Lepidoptera	associated with cellulose degradation	2.36%	18.1
Pseudomonas sp. ADAK22 Species-level Match Host Order Match	RISB0785	Samia ricini Order: Lepidoptera	cellulolytic activity	2.39%	17.8
Escherichia coli Species-level Match Host Order Match	RISB2120	Galleria mellonella Order: Lepidoptera	mediate trans-generational immune priming	0.61%	16.4
Klebsiella pneumoniae Species-level Match Host Order Match	RISB2459	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.13%	16.1
Klebsiella pneumoniae Species-level Match Host Order Match	RISB1994	Diatraea saccharalis Order: Lepidoptera	possess cellulose degrading activity	0.13%	15.9
Raoultella Host Order Match	RISB1672	Spodoptera frugiperda Order: Lepidoptera	downregulated POX but upregulated trypsin PI in this plant species	0.11%	11.4
Citrobacter Host Order Match	RISB2458	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.27%	11.3
Citrobacter Host Order Match	RISB0506	Plutella xylostella Order: Lepidoptera	None	0.27%	10.3
Cedecea Host Order Match	RISB0504	Plutella xylostella Order: Lepidoptera	None	0.06%	10.1
Escherichia coli Species-level Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	0.61%	8.3
Rahnella	RISB1623	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	1.67%	6.5
Erwinia aphidicola Species-level Match	RISB1705	Phlebotomus papatasi Order: Diptera	None	0.21%	5.2
Rahnella	RISB1800	Dendroctonus valens Order: Coleoptera	could alleviate or compromise the antagonistic effects of fungi O. minus and L. procerum on RTB larval growth	1.67%	3.9
Citrobacter	RISB1503	Bactrocera dorsalis Order: Diptera	Pesticide-degrading bacteria were frequently detected from pesticide-resistant insects. Susceptible insects became resistant after inoculation of the pesticide-degrading symbiont	0.27%	3.8
Rahnella	RISB0741	Dendroctonus ponderosae Order: Coleoptera	R. aquatilis decreased (−)-α-pinene (38%) and (+)-α-pinene (46%) by 40% and 45% (by GC-MS), respectively	1.67%	3.8
Raoultella	RISB2226	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.11%	3.5
Yersinia	RISB0492	Cimex hemipterus Order: Hemiptera	the disruption of the abundant Yersinia possibly could be related to the enhanced susceptibility towards the insecticides	0.15%	2.6
Raoultella	RISB1007	Monochamus alternatus Order: Coleoptera	may help M. alternatus degrade cellulose and pinene	0.11%	1.1
Cedecea	RISB1570	Bactrocera tau Order: Diptera	could attract male and female B. tau	0.06%	0.8
Yersinia	RISB0407	Anaphes nitens Order: Hymenoptera	None	0.15%	0.2