SRR24709533 - Bombyx mori

Basic Information

Run: SRR24709533

Assay Type: WGS

Bioproject: PRJNA724724

Biosample: SAMN35311584

Bytes: 94665110

Center Name: JULIUS KUEHN-INSTITUT

Sequencing Information

Instrument: MinION

Library Layout: SINGLE

Library Selection: RANDOM

Platform: OXFORD_NANOPORE

Geographic Information

Country: India

Continent: Asia

Location Name: India: Dehradun\, Jammu\, Mysore

Latitude/Longitude: -

Sample Information

Host: Bombyx mori

Isolation: -

Biosample Model: Invertebrate

Collection Date: 2017-04

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Enterococcus faecalis Species-level Match Host Order Match Host Species Match	RISB0727	Bombyx mori Order: Lepidoptera	with anti-N. bombycis activity might play an important role in protecting silkworms from microsporidia	0.95%	38.0
Citrobacter freundii Species-level Match Host Order Match Host Species Match	RISB2458	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	1.04%	37.0
Serratia fonticola Species-level Match	RISB0204	Belgica antarctica Order: Diptera	None	15.71%	20.7
Serratia marcescens Species-level Match Host Order Match	RISB2200	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.46%	20.5
Serratia marcescens Species-level Match Host Order Match	RISB0477	Spodoptera litura Order: Lepidoptera	The ingestion of bacteria negatively affected the development and nutritional physiology of insect. The bacteria after successful establishment started degrading the gut wall and invaded the haemocoel thereby causing the death of the host.	0.46%	20.2
Klebsiella oxytoca Species-level Match Host Order Match	RISB2565	Acrolepiopsis assectella Order: Lepidoptera	Klebsiella oxytoca and Bacillus spp. produce the volatile alkyl disulfides present in the fecal pellets, which serve as kairomones to attract the parasitoid Diadromus pulchellus to the moth host	1.05%	19.9
Klebsiella oxytoca Species-level Match Host Order Match	RISB1508	Walshia miscecolorella Order: Lepidoptera	Antibiotic-treated larvae suffered growth retardation on a diet containing plant extract or swainsonine. Gut bacteria showed toxin-degradation activities in vitro	1.05%	19.3
Enterococcus faecalis Species-level Match Host Order Match	RISB0026	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	0.95%	17.0
Klebsiella oxytoca Species-level Match Host Order Match	RISB1993	Diatraea saccharalis Order: Lepidoptera	possess cellulose degrading activity	1.05%	16.8
Pseudomonas sp. FP818 Species-level Match Host Order Match	RISB0286	Diatraea saccharalis Order: Lepidoptera	associated with cellulose degradation	1.00%	16.7
Pseudomonas sp. FP818 Species-level Match Host Order Match	RISB0785	Samia ricini Order: Lepidoptera	cellulolytic activity	1.00%	16.4
Citrobacter freundii Species-level Match Host Order Match	RISB0506	Plutella xylostella Order: Lepidoptera	None	1.04%	16.0
Pseudomonas sp. FP818 Species-level Match	RISB1622	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	1.00%	10.8
Streptomyces sp. NBC_01243 Species-level Match	RISB0943	Polybia plebeja Order: Hymenoptera	this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans	0.81%	9.8
Streptomyces sp. NBC_01243 Species-level Match	RISB2334	Sirex noctilio Order: Hymenoptera	degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide	0.81%	9.5
Citrobacter freundii Species-level Match	RISB0517	Leptinotarsa decemlineata Order: Coleoptera	affect the cellular and humoral immunity of the insect, increasing its susceptibility to Bacillus thuringiensis var. tenebrionis (morrisoni) (Bt)	1.04%	8.9
Morganella morganii Species-level Match	RISB0772	Delia antiqua Order: Diptera	showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.58%	8.9
Morganella morganii Species-level Match	RISB0008	Phormia regina Order: Diptera	deterred oviposition by female stable flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria	0.58%	8.5
Enterococcus faecalis Species-level Match	RISB0497	Cryptolestes ferrugineus Order: Coleoptera	bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.	0.95%	8.5
Morganella morganii Species-level Match	RISB1867	Costelytra zealandica Order: Coleoptera	Female beetles were previously shown to use phenol as their sex pheromone produced by symbiotic bacteria in the accessory or colleterial gland	0.58%	8.4
Streptomyces sp. NBC_01243 Species-level Match	RISB1134	mud dauber wasp Order: Hymenoptera	secondary metabolites derived from a Streptomyces sp. displayed significant inhibitory activity against hexokinase II	0.81%	8.2