SRR24709532 - Bombyx mori

Basic Information

Run: SRR24709532

Assay Type: WGS

Bioproject: PRJNA724724

Biosample: SAMN35311585

Bytes: 10734107

Center Name: JULIUS KUEHN-INSTITUT

Sequencing Information

Instrument: MinION

Library Layout: SINGLE

Library Selection: RANDOM

Platform: OXFORD_NANOPORE

Geographic Information

Country: India

Continent: Asia

Location Name: India: Dehadrun\, Mysore

Latitude/Longitude: -

Sample Information

Host: Bombyx mori

Isolation: -

Biosample Model: Invertebrate

Collection Date: 2017-04

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Enterococcus faecalis Species-level Match Host Order Match Host Species Match	RISB0727	Bombyx mori Order: Lepidoptera	with anti-N. bombycis activity might play an important role in protecting silkworms from microsporidia	2.28%	39.3
Enterococcus faecalis Species-level Match Host Order Match	RISB0026	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	2.28%	18.3
Morganella morganii Species-level Match	RISB0772	Delia antiqua Order: Diptera	showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	2.17%	10.5
Morganella morganii Species-level Match	RISB0008	Phormia regina Order: Diptera	deterred oviposition by female stable flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria	2.17%	10.1
Morganella morganii Species-level Match	RISB1867	Costelytra zealandica Order: Coleoptera	Female beetles were previously shown to use phenol as their sex pheromone produced by symbiotic bacteria in the accessory or colleterial gland	2.17%	10.0
Enterococcus faecalis Species-level Match	RISB0497	Cryptolestes ferrugineus Order: Coleoptera	bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.	2.28%	9.9
Serratia fonticola Species-level Match	RISB0204	Belgica antarctica Order: Diptera	None	1.15%	6.2