SRR24709531 - Bombyx mori

Basic Information

Run: SRR24709531

Assay Type: WGS

Bioproject: PRJNA724724

Biosample: SAMN35311586

Bytes: 165250630

Center Name: JULIUS KUEHN-INSTITUT

Sequencing Information

Instrument: MinION

Library Layout: SINGLE

Library Selection: RANDOM

Platform: OXFORD_NANOPORE

Geographic Information

Country: India

Continent: Asia

Location Name: India: Jammu

Latitude/Longitude: -

Sample Information

Host: Bombyx mori

Isolation: -

Biosample Model: Invertebrate

Collection Date: 2017-04

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Serratia fonticola Species-level Match	RISB0204	Belgica antarctica Order: Diptera	None	42.73%	47.7
Enterococcus faecalis Species-level Match Host Order Match Host Species Match	RISB0727	Bombyx mori Order: Lepidoptera	with anti-N. bombycis activity might play an important role in protecting silkworms from microsporidia	0.38%	37.4
Citrobacter freundii Species-level Match Host Order Match Host Species Match	RISB2458	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	1.37%	37.4
Serratia liquefaciens Species-level Match Host Order Match Host Species Match	RISB2461	Bombyx mori Order: Lepidoptera	able to utilize three polysaccharides including CMcellulose, xylan and pectin	0.19%	36.7
Klebsiella pneumoniae Species-level Match Host Order Match Host Species Match	RISB2459	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.15%	36.2
Escherichia coli Species-level Match Host Order Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	2.90%	22.2
Serratia sp. JSRIV001 Species-level Match Host Order Match	RISB1542	Plutella xylostella Order: Lepidoptera	decreased resistance to the widely used insecticide, chlorpyrifos, in P. xylostella	5.03%	21.7
Klebsiella oxytoca Species-level Match Host Order Match	RISB2565	Acrolepiopsis assectella Order: Lepidoptera	Klebsiella oxytoca and Bacillus spp. produce the volatile alkyl disulfides present in the fecal pellets, which serve as kairomones to attract the parasitoid Diadromus pulchellus to the moth host	2.41%	21.3
Klebsiella oxytoca Species-level Match Host Order Match	RISB1508	Walshia miscecolorella Order: Lepidoptera	Antibiotic-treated larvae suffered growth retardation on a diet containing plant extract or swainsonine. Gut bacteria showed toxin-degradation activities in vitro	2.41%	20.7
Escherichia coli Species-level Match Host Order Match	RISB2120	Galleria mellonella Order: Lepidoptera	mediate trans-generational immune priming	2.90%	18.7
Enterococcus faecalis Species-level Match Host Order Match	RISB0026	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	0.38%	16.4
Citrobacter freundii Species-level Match Host Order Match	RISB0506	Plutella xylostella Order: Lepidoptera	None	1.37%	16.4
Pseudomonas sp. DTU12.1 Species-level Match Host Order Match	RISB0286	Diatraea saccharalis Order: Lepidoptera	associated with cellulose degradation	0.55%	16.3
Pseudomonas sp. FP2294 Species-level Match Host Order Match	RISB0286	Diatraea saccharalis Order: Lepidoptera	associated with cellulose degradation	0.51%	16.3
Pseudomonas sp. So3.2b Species-level Match Host Order Match	RISB0286	Diatraea saccharalis Order: Lepidoptera	associated with cellulose degradation	0.49%	16.2
Escherichia coli Species-level Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	2.90%	10.6
Citrobacter freundii Species-level Match	RISB0517	Leptinotarsa decemlineata Order: Coleoptera	affect the cellular and humoral immunity of the insect, increasing its susceptibility to Bacillus thuringiensis var. tenebrionis (morrisoni) (Bt)	1.37%	9.3
Enterococcus faecalis Species-level Match	RISB0497	Cryptolestes ferrugineus Order: Coleoptera	bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.	0.38%	8.0
Vibrio	RISB1810	Monochamus galloprovincialis Order: Coleoptera	Have the ability for degradation of cellulose, proteins and starch	0.14%	1.5
Dickeya	RISB1086	Rhodnius prolixus Order: Hemiptera	supply enzymatic biosynthesis of B-complex vitamins	0.12%	1.1