SRR24296968 - Eumaeus atala

Basic Information

Run: SRR24296968

Assay Type: WGS

Bioproject: PRJNA961367

Biosample: SAMN34359488

Bytes: 602135563

Center Name: LANGEBIO

Sequencing Information

Instrument: NextSeq 550

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Florida

Latitude/Longitude: not collected

Sample Information

Host: Eumaeus atala

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2017-02-15

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Pantoea sp. SS70 Species-level Match Host Order Match Host Species Match	RISB0300	Eumaeus atala Order: Lepidoptera	suggesting the occurrence of an unprecedented desferrioxamine-like biosynthetic pathway,including desferrioxamine B, which may help tolerating diets rich in azoxyglycosides, BMAA, and other cycad toxins, including a possible role for bacterial siderophores	0.53%	40.5
Pantoea sp. SOD02 Species-level Match Host Order Match Host Species Match	RISB0300	Eumaeus atala Order: Lepidoptera	suggesting the occurrence of an unprecedented desferrioxamine-like biosynthetic pathway,including desferrioxamine B, which may help tolerating diets rich in azoxyglycosides, BMAA, and other cycad toxins, including a possible role for bacterial siderophores	0.46%	40.5
Pantoea sp. BRR-3P Species-level Match Host Order Match Host Species Match	RISB0300	Eumaeus atala Order: Lepidoptera	suggesting the occurrence of an unprecedented desferrioxamine-like biosynthetic pathway,including desferrioxamine B, which may help tolerating diets rich in azoxyglycosides, BMAA, and other cycad toxins, including a possible role for bacterial siderophores	0.39%	40.4
Enterobacter mori Species-level Match	RISB1163	Bactrocera dorsalis Order: Diptera	Promote the growth of larvae	16.57%	22.1
Klebsiella pneumoniae Species-level Match Host Order Match	RISB2185	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.12%	20.1
Serratia marcescens Species-level Match Host Order Match	RISB2200	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.05%	20.1
Microbacterium oleivorans Species-level Match Host Order Match	RISB2194	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.00%	20.0
Serratia marcescens Species-level Match Host Order Match	RISB0477	Spodoptera litura Order: Lepidoptera	The ingestion of bacteria negatively affected the development and nutritional physiology of insect. The bacteria after successful establishment started degrading the gut wall and invaded the haemocoel thereby causing the death of the host.	0.05%	19.8
Escherichia coli Species-level Match Host Order Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	0.11%	19.4
Stenotrophomonas maltophilia Species-level Match Host Order Match	RISB1122	Bombyx mori Order: Lepidoptera	facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.	0.01%	19.0
Serratia marcescens Species-level Match Host Order Match	RISB1426	Maculinea alcon Order: Lepidoptera	been associated with growth-promoting activity, is capable of producing volatile pyrazines, including 2,5-dimethylpyrazine and 3-ethyl-2,5-dimethylpyrazine, which are used as pheromones by ants	0.05%	18.9
Klebsiella oxytoca Species-level Match Host Order Match	RISB2565	Acrolepiopsis assectella Order: Lepidoptera	Klebsiella oxytoca and Bacillus spp. produce the volatile alkyl disulfides present in the fecal pellets, which serve as kairomones to attract the parasitoid Diadromus pulchellus to the moth host	0.02%	18.9
Enterobacter ludwigii Species-level Match Host Order Match	RISB1543	Helicoverpa zea Order: Lepidoptera	two immunity-related genes glucose oxidase (GOX) and lysozyme (LYZ) were more highly expressed in both salivary glands and midguts compared with MgCl2 solution-treated caterpillars	0.13%	18.7
Enterobacter sp. JBIWA008 Species-level Match Host Order Match	RISB1392	Spodoptera frugiperda Order: Lepidoptera	microbe-mediated assaults by maize defenses on the fall armyworm on the insect digestive and immune system reduced growth and elevated mortality in these insects	0.04%	18.3
Klebsiella oxytoca Species-level Match Host Order Match	RISB1508	Walshia miscecolorella Order: Lepidoptera	Antibiotic-treated larvae suffered growth retardation on a diet containing plant extract or swainsonine. Gut bacteria showed toxin-degradation activities in vitro	0.02%	18.3
Enterococcus sp. FDAARGOS_375 Species-level Match Host Order Match	RISB1393	Spodoptera frugiperda Order: Lepidoptera	microbe-mediated assaults by maize defenses on the fall armyworm on the insect digestive and immune system reduced growth and elevated mortality in these insects	0.01%	18.2
Acinetobacter sp. Tol 5 Species-level Match Host Order Match	RISB1500	Lymantria dispar Order: Lepidoptera	Bacteria isolated from a host plant had a glycoside-degrading activity, which enhanced growth of the moth when larvae were fed on a toxin-containing diet	0.06%	18.1
Acinetobacter sp. C32I Species-level Match Host Order Match	RISB1500	Lymantria dispar Order: Lepidoptera	Bacteria isolated from a host plant had a glycoside-degrading activity, which enhanced growth of the moth when larvae were fed on a toxin-containing diet	0.01%	18.1
Acinetobacter sp. Z1 Species-level Match Host Order Match	RISB1500	Lymantria dispar Order: Lepidoptera	Bacteria isolated from a host plant had a glycoside-degrading activity, which enhanced growth of the moth when larvae were fed on a toxin-containing diet	0.00%	18.1
Leclercia adecarboxylata Species-level Match Host Order Match	RISB1757	Spodoptera frugiperda Order: Lepidoptera	degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn	0.05%	16.9
Microbacterium arborescens Species-level Match Host Order Match	RISB1759	Spodoptera frugiperda Order: Lepidoptera	degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn	0.00%	16.8
Enterococcus sp. FDAARGOS_375 Species-level Match Host Order Match	RISB1541	Plutella xylostella Order: Lepidoptera	enhanced resistance to the widely used insecticide, chlorpyrifos, in P. xylostella	0.01%	16.7
Stenotrophomonas maltophilia Species-level Match Host Order Match	RISB1123	Bombyx mori Order: Lepidoptera	confer a significant fitness advantage via nutritional (amino acids) upgrading	0.01%	16.6
Leclercia adecarboxylata Species-level Match Host Order Match	RISB1758	Spodoptera frugiperda Order: Lepidoptera	may influence the metabolization of pesticides in insects	0.05%	16.2
Enterococcus casseliflavus Species-level Match Host Order Match	RISB1755	Spodoptera frugiperda Order: Lepidoptera	may influence the metabolization of pesticides in insects	0.02%	16.2
Microbacterium arborescens Species-level Match Host Order Match	RISB1761	Spodoptera frugiperda Order: Lepidoptera	may influence the metabolization of pesticides in insects	0.00%	16.1
Stenotrophomonas sp. ZAC14A_NAIMI4_1 Species-level Match Host Order Match	RISB0031	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	0.03%	16.1
Citrobacter freundii Species-level Match Host Order Match	RISB2458	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.04%	16.0
Citrobacter freundii complex sp. CFNIH2 Species-level Match Host Order Match	RISB2458	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.00%	16.0
Escherichia coli Species-level Match Host Order Match	RISB2120	Galleria mellonella Order: Lepidoptera	mediate trans-generational immune priming	0.11%	15.9
Pseudomonas sp. F3-2 Species-level Match Host Order Match	RISB0286	Diatraea saccharalis Order: Lepidoptera	associated with cellulose degradation	0.01%	15.8
Pseudomonas sp. HR96 Species-level Match Host Order Match	RISB0286	Diatraea saccharalis Order: Lepidoptera	associated with cellulose degradation	0.00%	15.7
Erwinia sp. E602 Species-level Match Host Order Match	RISB1986	Bombyx mori Order: Lepidoptera	producing cellulase and amylase	0.03%	15.7
Erwinia sp. QL-Z3 Species-level Match Host Order Match	RISB1986	Bombyx mori Order: Lepidoptera	producing cellulase and amylase	0.02%	15.6
Erwinia sp. HDF1-3R Species-level Match Host Order Match	RISB1986	Bombyx mori Order: Lepidoptera	producing cellulase and amylase	0.01%	15.6
Pseudomonas sp. F3-2 Species-level Match Host Order Match	RISB0785	Samia ricini Order: Lepidoptera	cellulolytic activity	0.01%	15.4
Citrobacter freundii Species-level Match Host Order Match	RISB0506	Plutella xylostella Order: Lepidoptera	None	0.04%	15.0
Cedecea lapagei Species-level Match Host Order Match	RISB0504	Plutella xylostella Order: Lepidoptera	None	0.00%	15.0
Streptomyces Host Order Match	RISB1313	Bombyx mori Order: Lepidoptera	produce Bombyxamycin A which showed significant antibacterial and antiproliferative effects	0.02%	11.8
Rahnella aquatilis Species-level Match	RISB1623	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.01%	9.8
Sodalis praecaptivus Species-level Match	RISB0122	Nezara viridula Order: Hemiptera	plays an important role in interactions between insects and plants and could therefore be considered a valuable target for the development of sustainable pest control strategies.	0.00%	8.6
Raoultella sp. HC6 Species-level Match	RISB2226	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.00%	8.3
Morganella morganii Species-level Match	RISB0772	Delia antiqua Order: Diptera	showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.00%	8.3
Leucobacter aridicollis Species-level Match	RISB0771	Delia antiqua Order: Diptera	showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.01%	8.3
Sodalis praecaptivus Species-level Match	RISB1718	Sitophilus zeamais Order: Coleoptera	we investigated the role of a quorum sensing（QS ） system in S. praecaptivus and found that it negatively regulates a potent insect-killing phenotype	0.00%	8.0
Morganella morganii Species-level Match	RISB0008	Phormia regina Order: Diptera	deterred oviposition by female stable flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria	0.00%	8.0
Morganella morganii Species-level Match	RISB1867	Costelytra zealandica Order: Coleoptera	Female beetles were previously shown to use phenol as their sex pheromone produced by symbiotic bacteria in the accessory or colleterial gland	0.00%	7.8
Escherichia coli Species-level Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	0.11%	7.8
Exiguobacterium sp. 9-2 Species-level Match	RISB0007	Phormia regina Order: Diptera	prompted oviposition by flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria	0.07%	7.8
Exiguobacterium sp. MH3 Species-level Match	RISB0007	Phormia regina Order: Diptera	prompted oviposition by flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria	0.02%	7.7
Exiguobacterium sp. ZWU0009 Species-level Match	RISB0007	Phormia regina Order: Diptera	prompted oviposition by flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria	0.00%	7.7
Rahnella aquatilis Species-level Match	RISB1800	Dendroctonus valens Order: Coleoptera	could alleviate or compromise the antagonistic effects of fungi O. minus and L. procerum on RTB larval growth	0.01%	7.2
Rahnella aquatilis Species-level Match	RISB0741	Dendroctonus ponderosae Order: Coleoptera	R. aquatilis decreased (−)-α-pinene (38%) and (+)-α-pinene (46%) by 40% and 45% (by GC-MS), respectively	0.01%	7.1
Kosakonia sp. MUSA4 Species-level Match	RISB0810	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-16 oxidation pathway	0.02%	6.4
Kosakonia sp. BYX6 Species-level Match	RISB0810	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-16 oxidation pathway	0.01%	6.4
Kosakonia sp. SMBL-WEM22 Species-level Match	RISB0810	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-16 oxidation pathway	0.00%	6.4
Cedecea lapagei Species-level Match	RISB1570	Bactrocera tau Order: Diptera	could attract male and female B. tau	0.00%	5.7
Raoultella sp. HC6 Species-level Match	RISB1575	Bactrocera tau Order: Diptera	could attract male and female B. tau	0.00%	5.7
Salmonella enterica Species-level Match	RISB0413	Melanaphis sacchari Order: Hemiptera	None	0.09%	5.1
Streptomyces	RISB0334	Philanthus triangulum Order: Hymenoptera	S. philanthi protect the offspring from opportunistic pathogens by producing antibiotics ,the beewolf protects S. philanthi from oxidative and nitrosative damage by producing protective enzymes and embalming the symbiont in a secretion containing long-chain hydrocarbons	0.02%	5.0
Variovorax sp. WDL1 Species-level Match	RISB1712	Phlebotomus papatasi Order: Diptera	None	0.01%	5.0
Bosea sp. Tri-49 Species-level Match	RISB1702	Phlebotomus papatasi Order: Diptera	None	0.01%	5.0
Pseudocitrobacter corydidari Species-level Match	RISB0696	Corydidarum magnifica Order: Blattodea	None	0.00%	5.0
Trabulsiella	RISB2201	Termitidae Order: Blattodea	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.00%	5.0
Streptomyces	RISB2316	Philanthinus quattuordecimpunctatus Order: Hymenoptera	host cultivate the actinomycete in specialized antennal gland reservoirs. Then symbionts are transferred to the larval cocoon, where they provide protection against pathogenic fungi by producing at least nine different antibiotics.	0.02%	4.6
Caballeronia	RISB0399	Riptortus pedestris Order: Hemiptera	in laboratory conditions, C. jiangsuensis significantly enhanced the development, body size, and reproductive potentials of R. pedestris, compared to individuals with no symbiotic bacteria.	0.00%	3.8
Xanthomonas	RISB0498	Xylocopa appendiculata Order: Hymenoptera	Xanthomonas strain from Japanese carpenter bee is effective PU-degradable bacterium and is able to use polyacryl-based PU as a nutritional source, as well as other types of PS-PU and PE-PU	0.00%	3.8
Pectobacterium	RISB1889	Pseudococcus longispinus Order: Hemiptera	a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids	0.03%	3.4
Symbiopectobacterium	RISB1889	Pseudococcus longispinus Order: Hemiptera	a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids	0.01%	3.4
Yokenella	RISB1492	Nezara viridula Order: Hemiptera	help stinkbugs to feed on soybean developing seeds in spite of its chemical defenses by degrading isoflavonoids and deactivate soybean protease inhibitors	0.00%	3.1
Caballeronia	RISB0276	Riptortus pedestris Order: Hemiptera	Gut symbiont resulted in increase in the body size and weight of male adults;increased dispersal capacity of male adults especially for flight	0.00%	2.8
Caballeronia	RISB0530	Anasa tristis Order: Hemiptera	the symbiont Caballeronia prevents successful, long-term establishment of phytopathogenic Serratia marcescens in the squash bug	0.00%	2.5
Comamonas	RISB2021	Bactrocera dorsalis Order: Diptera	This group in the immature stages may be helping the insects to cope with oxidative stress by supplementing available oxygen.	0.01%	2.5
Yersinia	RISB0492	Cimex hemipterus Order: Hemiptera	the disruption of the abundant Yersinia possibly could be related to the enhanced susceptibility towards the insecticides	0.02%	2.4
Xanthomonas	RISB0217	Xylocopa appendiculata Order: Hymenoptera	strains biodegraded polyethylene terephthalate PET powder, broke it into its degradation products	0.00%	1.9
Nostoc	RISB0812	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-18 oxidation pathway	0.02%	1.4
Vibrio	RISB1810	Monochamus galloprovincialis Order: Coleoptera	Have the ability for degradation of cellulose, proteins and starch	0.00%	1.3
Pectobacterium	RISB0798	Pseudoregma bambucicola Order: Hemiptera	may help P. bambucicola feed on the stalks of bamboo	0.03%	1.1
Dickeya	RISB1086	Rhodnius prolixus Order: Hemiptera	supply enzymatic biosynthesis of B-complex vitamins	0.04%	1.1
Cronobacter	RISB0247	Tenebrio molitor Order: Coleoptera	may be indirectly involved in the digestion of PE	0.04%	1.0
Trabulsiella	RISB1685	Melolontha hippocastani Order: Coleoptera	Involved in cellulose degradation	0.00%	0.7
Comamonas	RISB1875	Aedes aegypti Order: Diptera	gut microbiome	0.01%	0.3
Kluyvera	RISB1064	Oryctes rhinoceros Order: Coleoptera	gut microbe	0.02%	0.2
Comamonas	RISB1061	Oryctes rhinoceros Order: Coleoptera	gut microbe	0.01%	0.2
Pectobacterium	RISB1772	Muscidae Order: Diptera	None	0.03%	0.0
Yersinia	RISB0407	Anaphes nitens Order: Hymenoptera	None	0.02%	0.0
Gibbsiella	RISB1320	Vespa mandarinia Order: Hymenoptera	None	0.01%	0.0
Cupriavidus	RISB0694	Alydus tomentosus Order: Hemiptera	None	0.01%	0.0
Lonsdalea	RISB1321	Vespa mandarinia Order: Hymenoptera	None	0.00%	0.0
Paraburkholderia	RISB0125	Physopelta gutta Order: Hemiptera	None	0.00%	0.0