SRR24296965 - Rhopalotria slossonae

Basic Information

Run: SRR24296965

Assay Type: WGS

Bioproject: PRJNA961367

Biosample: SAMN34359491

Bytes: 1339565323

Center Name: LANGEBIO

Sequencing Information

Instrument: NextSeq 550

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Florida

Latitude/Longitude: not collected

Sample Information

Host: Rhopalotria slossonae

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2017-02-15

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Stenotrophomonas maltophilia Species-level Match Host Order Match	RISB0139	Tenebrio molitor Order: Coleoptera	correlated with polyvinyl chloride PVC degradation	53.33%	69.3
Stenotrophomonas maltophilia Species-level Match	RISB1122	Bombyx mori Order: Lepidoptera	facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.	53.33%	62.3
Stenotrophomonas maltophilia Species-level Match	RISB1227	Delia antiqua Order: Diptera	six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids	53.33%	61.0
Serratia sp. FDAARGOS_506 Species-level Match Host Order Match Host Species Match	RISB0308	Rhopalotria slossonae Order: Coleoptera	suggesting the occurrence of an unprecedented desferrioxamine-like biosynthetic pathway,including desferrioxamine B, which may help tolerating diets rich in azoxyglycosides, BMAA, and other cycad toxins, including a possible role for bacterial siderophores	0.01%	40.0
Serratia sp. SCBI Species-level Match Host Order Match Host Species Match	RISB0308	Rhopalotria slossonae Order: Coleoptera	suggesting the occurrence of an unprecedented desferrioxamine-like biosynthetic pathway,including desferrioxamine B, which may help tolerating diets rich in azoxyglycosides, BMAA, and other cycad toxins, including a possible role for bacterial siderophores	0.00%	40.0
Serratia marcescens Species-level Match Host Order Match	RISB1295	Nicrophorus vespilloides Order: Coleoptera	producing antibacterial compound Serrawettin W2, which has antibacterial and nematode-inhibiting effects	3.13%	20.2
Pantoea sp. SS70 Species-level Match Host Order Match	RISB0736	Psylliodes chrysocephala Order: Coleoptera	Laboratory-reared and field-collected P. chrysocephala all contained three core genera Pantoea, Acinetobacter and Pseudomonas, and reintroduction of Pantoea sp. Pc8 in antibiotic-fed beetles restored isothiocyanate degradation ability in vivo (by 16S rRNA gene sequencing and LC-MS)	0.01%	20.0
Pantoea sp. JZ2 Species-level Match Host Order Match	RISB0736	Psylliodes chrysocephala Order: Coleoptera	Laboratory-reared and field-collected P. chrysocephala all contained three core genera Pantoea, Acinetobacter and Pseudomonas, and reintroduction of Pantoea sp. Pc8 in antibiotic-fed beetles restored isothiocyanate degradation ability in vivo (by 16S rRNA gene sequencing and LC-MS)	0.00%	20.0
Burkholderia gladioli Species-level Match Host Order Match	RISB1172	Lagria villosa Order: Coleoptera	process a cryptic gene cluster that codes for the biosynthesis of a novel antifungal polyketide with a glutarimide pharmacophore, which led to the discovery of the gladiofungins as previously-overlooked components of the antimicrobial armory of the beetle symbiont	0.00%	20.0
Pseudomonas sp. LRP2-20 Species-level Match Host Order Match	RISB1622	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.01%	19.8
Pseudomonas sp. Leaf58 Species-level Match Host Order Match	RISB1622	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.00%	19.8
Pseudomonas fulva Species-level Match Host Order Match	RISB1510	Hypothenemus hampei Order: Coleoptera	Antibiotic-treated larvae showed lower caffeine-degrading activity and increased mortality. These deficients were recovered by inoculation of the caffeine-degrading symbiont. A caffeine-degrading gene was detected from the symbiont	0.00%	19.6
Burkholderia gladioli Species-level Match Host Order Match	RISB1729	Lagria hirta Order: Coleoptera	the symbionts inhibit the growth of antagonistic fungi on the eggs of the insect host, indicating that the Lagria-associated Burkholderia have evolved from plant pathogenic ancestors into insect defensive mutualists	0.00%	19.3
Burkholderia gladioli Species-level Match Host Order Match	RISB1604	Lagria villosa Order: Coleoptera	Bacteria produce icosalide, an unusual two-tailed lipocyclopeptide antibiotic,which is active against entomopathogenic bacteria, thus adding to the chemical armory protecting beetle offspring	0.00%	18.8
Enterobacter sp. AN-K1 Species-level Match Host Order Match	RISB2221	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.05%	18.4
Enterobacter sp. LU1 Species-level Match Host Order Match	RISB2221	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.04%	18.4
Enterobacter sp. DTU_2021_1002640_1_SI_PRY_ASU_LCPMC_013 Species-level Match Host Order Match	RISB2221	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.02%	18.4
Sphingobacterium sp. R2 Species-level Match Host Order Match	RISB2227	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.00%	18.3
Klebsiella oxytoca Species-level Match Host Order Match	RISB1506	Cleonus trivittatus Order: Coleoptera	Antibiotic-treated larvae suffered growth retardation on a diet containing plant extract or swainsonine. Gut bacteria showed toxin-degradation activities in vitro	0.08%	18.3
Citrobacter freundii Species-level Match Host Order Match	RISB0517	Leptinotarsa decemlineata Order: Coleoptera	affect the cellular and humoral immunity of the insect, increasing its susceptibility to Bacillus thuringiensis var. tenebrionis (morrisoni) (Bt)	0.00%	17.9
Escherichia coli Species-level Match Host Order Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	0.01%	17.7
Citrobacter freundii Species-level Match Host Order Match	RISB0127	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	0.00%	17.7
Delftia sp. HK171 Species-level Match Host Order Match	RISB0806	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-19 oxidation pathway	0.23%	16.7
Delftia sp. Cs1-4 Species-level Match Host Order Match	RISB0806	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-19 oxidation pathway	0.19%	16.6
Delftia sp. DS1230 Species-level Match Host Order Match	RISB0806	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-19 oxidation pathway	0.07%	16.5
Pantoea sp. SS70 Species-level Match Host Order Match	RISB0814	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-14 oxidation pathway	0.01%	16.4
Klebsiella sp. PL-2018 Species-level Match Host Order Match	RISB0809	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-17 oxidation pathway	0.01%	16.4
Klebsiella sp. FDAARGOS_511 Species-level Match Host Order Match	RISB0809	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-17 oxidation pathway	0.00%	16.4
Kosakonia sp. SMBL-WEM22 Species-level Match Host Order Match	RISB0810	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-16 oxidation pathway	0.00%	16.4
Citrobacter koseri Species-level Match Host Order Match	RISB1060	Oryctes rhinoceros Order: Coleoptera	associated with insect digestive tracts	0.00%	15.8
Sphingobium Host Order Match	RISB1837	Dendroctonus valens Order: Coleoptera	It can trongly degrade naringenin, and pinitol, the main soluble carbohydrate of P. tabuliformis, is retained in L. procerum-infected phloem and facilitate naringenin biodegradation by the microbiotas.	0.00%	14.0
Mycobacterium Host Order Match	RISB1156	Nicrophorus concolor Order: Coleoptera	produces Antimicrobial compounds	0.00%	10.6
Aeromonas Host Order Match	RISB1145	Tenebrio molitor Order: Coleoptera	degrading plastics	0.00%	10.4
Diaphorobacter Host Order Match	RISB1062	Oryctes rhinoceros Order: Coleoptera	gut microbe	0.00%	10.2
Bacillus pumilus Species-level Match	RISB2167	Termitidae Order: Blattodea	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.02%	10.0
Escherichia coli Species-level Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	0.01%	9.3
Xanthomonas sp. CFBP 8445 Species-level Match	RISB0498	Xylocopa appendiculata Order: Hymenoptera	Xanthomonas strain from Japanese carpenter bee is effective PU-degradable bacterium and is able to use polyacryl-based PU as a nutritional source, as well as other types of PS-PU and PE-PU	0.00%	8.8
Comamonas terrigena Species-level Match	RISB2021	Bactrocera dorsalis Order: Diptera	This group in the immature stages may be helping the insects to cope with oxidative stress by supplementing available oxygen.	0.00%	7.5
Bacillus pumilus Species-level Match	RISB1489	Bombyx mori Order: Lepidoptera	process a lipase gene and antiviral activity of its protein against B. mori nucleopolyhedrovirus (BmNPV)	0.02%	7.1
Xanthomonas sp. CFBP 8445 Species-level Match	RISB0217	Xylocopa appendiculata Order: Hymenoptera	strains biodegraded polyethylene terephthalate PET powder, broke it into its degradation products	0.00%	6.9
Leclercia adecarboxylata Species-level Match	RISB1757	Spodoptera frugiperda Order: Lepidoptera	degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn	0.00%	6.8
Bacillus pumilus Species-level Match	RISB0725	Acrobasis nuxvorella Order: Lepidoptera	Bacillus pumilus strains: LB66, LB24, and TT29 presented different tannase activity	0.02%	6.7
Leclercia adecarboxylata Species-level Match	RISB1758	Spodoptera frugiperda Order: Lepidoptera	may influence the metabolization of pesticides in insects	0.00%	6.1
Escherichia coli Species-level Match	RISB2120	Galleria mellonella Order: Lepidoptera	mediate trans-generational immune priming	0.01%	5.8
Microbacterium sp. ProA8 Species-level Match	RISB2095	Aedes aegypti Order: Diptera	axenic larvae cannot develop	0.00%	5.6
Comamonas testosteroni Species-level Match	RISB1875	Aedes aegypti Order: Diptera	gut microbiome	0.00%	5.3
Microbacterium paraoxydans Species-level Match	RISB0907	Myzus persicae Order: Hemiptera	None	0.02%	5.0
Sphingobacterium multivorum Species-level Match	RISB0671	Melanaphis bambusae Order: Hemiptera	None	0.01%	5.0
Salmonella enterica Species-level Match	RISB0413	Melanaphis sacchari Order: Hemiptera	None	0.01%	5.0
Erwinia amylovora Species-level Match	RISB0403	Anaphes nitens Order: Hymenoptera	None	0.00%	5.0
Bosea sp. F3-2 Species-level Match	RISB1702	Phlebotomus papatasi Order: Diptera	None	0.00%	5.0
Azospira	RISB1918	Anopheles gambiae Order: Diptera	may be related with mediating adaptation to different ecological niches or in shaping specific adult behaviors including mating	0.00%	2.5
Sphingomonas	RISB0420	Aphis gossypii Order: Hemiptera	Sphingomonas could mediate A. gossypii resistance to imidacloprid by hydroxylation and nitroreduction	0.00%	2.0
Sphingomonas	RISB1307	Aphis gossypii Order: Hemiptera	have been previously described in associations with phloem-feeding insects, in low abundances	0.00%	1.9
Achromobacter	RISB1869	Aedes aegypti Order: Diptera	gut microbiome	1.53%	1.8
Sphingomonas	RISB0134	Spodoptera frugiperda Order: Lepidoptera	provide a protective effect to against chlorantraniliprole stress to S. frugiperda	0.00%	1.6
Achromobacter	RISB0383	Aphis gossypii Order: Hemiptera	None	1.53%	1.5
Agrobacterium	RISB0710	Fragariocoptes setiger Order: Trombidiformes	it appears to form a biologically important association with the mite	0.00%	1.4
Diaphorobacter	RISB2150	Osmia bicornis Order: Hymenoptera	may be essential to support Osmia larvae in their nutrient uptake	0.00%	1.3
Variovorax	RISB2153	Osmia bicornis Order: Hymenoptera	may be essential to support Osmia larvae in their nutrient uptake	0.00%	1.3
Dickeya	RISB1086	Rhodnius prolixus Order: Hemiptera	supply enzymatic biosynthesis of B-complex vitamins	0.01%	1.0
Aeromonas	RISB2456	Bombyx mori Order: Lepidoptera	able to utilize the CMcellulose and xylan	0.00%	0.8
Aeromonas	RISB2086	Aedes aegypti Order: Diptera	axenic larvae cannot develop	0.00%	0.6
Sphingobium	RISB1880	Aedes aegypti Order: Diptera	gut microbiome	0.00%	0.3
Agrobacterium	RISB0650	Melanaphis bambusae Order: Hemiptera	None	0.00%	0.0
Variovorax	RISB1712	Phlebotomus papatasi Order: Diptera	None	0.00%	0.0
Cupriavidus	RISB0694	Alydus tomentosus Order: Hemiptera	None	0.00%	0.0
Ralstonia	RISB0243	Spodoptera frugiperda Order: Lepidoptera	None	0.00%	0.0