SRR24296964 - Rhopalotria slossonae

Basic Information

Run: SRR24296964

Assay Type: WGS

Bioproject: PRJNA961367

Biosample: SAMN34359491

Bytes: 1466673827

Center Name: LANGEBIO

Sequencing Information

Instrument: NextSeq 550

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Florida

Latitude/Longitude: not collected

Sample Information

Host: Rhopalotria slossonae

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2017-02-15

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Serratia marcescens Species-level Match Host Order Match	RISB1295	Nicrophorus vespilloides Order: Coleoptera	producing antibacterial compound Serrawettin W2, which has antibacterial and nematode-inhibiting effects	42.00%	59.1
Serratia marcescens Species-level Match Host Order Match	RISB0365	Pagiophloeus tsushimanus Order: Coleoptera	terpenoid-degrading: the highest degradation rates of D-camphor, linalool, and eucalyptol	42.00%	58.8
Serratia marcescens Species-level Match Host Order Match	RISB1158	Nicrophorus vespilloides Order: Coleoptera	produces an antibacterial cyclic lipopeptide called serrawettin W2	42.00%	58.3
Stenotrophomonas maltophilia Species-level Match Host Order Match	RISB0139	Tenebrio molitor Order: Coleoptera	correlated with polyvinyl chloride PVC degradation	38.40%	54.4
Stenotrophomonas maltophilia Species-level Match	RISB1122	Bombyx mori Order: Lepidoptera	facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.	38.40%	47.4
Stenotrophomonas maltophilia Species-level Match	RISB1227	Delia antiqua Order: Diptera	six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids	38.40%	46.1
Pantoea sp. SS70 Species-level Match Host Order Match	RISB0736	Psylliodes chrysocephala Order: Coleoptera	Laboratory-reared and field-collected P. chrysocephala all contained three core genera Pantoea, Acinetobacter and Pseudomonas, and reintroduction of Pantoea sp. Pc8 in antibiotic-fed beetles restored isothiocyanate degradation ability in vivo (by 16S rRNA gene sequencing and LC-MS)	0.06%	20.1
Pantoea sp. At-9b Species-level Match Host Order Match	RISB0736	Psylliodes chrysocephala Order: Coleoptera	Laboratory-reared and field-collected P. chrysocephala all contained three core genera Pantoea, Acinetobacter and Pseudomonas, and reintroduction of Pantoea sp. Pc8 in antibiotic-fed beetles restored isothiocyanate degradation ability in vivo (by 16S rRNA gene sequencing and LC-MS)	0.01%	20.0
Pantoea sp. SOD02 Species-level Match Host Order Match	RISB0736	Psylliodes chrysocephala Order: Coleoptera	Laboratory-reared and field-collected P. chrysocephala all contained three core genera Pantoea, Acinetobacter and Pseudomonas, and reintroduction of Pantoea sp. Pc8 in antibiotic-fed beetles restored isothiocyanate degradation ability in vivo (by 16S rRNA gene sequencing and LC-MS)	0.00%	20.0
Pseudomonas sp. LRP2-20 Species-level Match Host Order Match	RISB1622	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.00%	19.8
Acinetobacter sp. Colony158 Species-level Match Host Order Match	RISB0730	Curculio chinensis Order: Coleoptera	Acinetobacter sp. in C. chinensis enriched after treating with saponin, and when incubating bacteria with saponin for 72 h, saponin content significantly decreased from 4.054 to 1.867 mg/mL (by 16S rRNA metagenome sequencing and HPLC)	0.01%	19.7
Enterobacter sp. BWH 37 Species-level Match Host Order Match	RISB2221	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.14%	18.5
Candidatus Sodalis pierantonius Species-level Match Host Order Match	RISB2035	Sitophilus oryzae Order: Coleoptera	endosymbiont dynamics parallels numerous transcriptional changes in weevil developing adults and affects several biological processes, including metabolism and development	0.00%	18.4
Enterobacter sp. AN-K1 Species-level Match Host Order Match	RISB2221	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.04%	18.4
Enterobacter sp. DTU_2021_1002640_1_SI_PRY_ASU_LCPMC_013 Species-level Match Host Order Match	RISB2221	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.03%	18.4
Pseudomonas sp. LRP2-20 Species-level Match Host Order Match	RISB2224	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.00%	18.3
Raoultella sp. HC6 Species-level Match Host Order Match	RISB2226	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.00%	18.3
Sphingobacterium sp. R2 Species-level Match Host Order Match	RISB2227	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.00%	18.3
Klebsiella oxytoca Species-level Match Host Order Match	RISB1506	Cleonus trivittatus Order: Coleoptera	Antibiotic-treated larvae suffered growth retardation on a diet containing plant extract or swainsonine. Gut bacteria showed toxin-degradation activities in vitro	0.04%	18.3
Citrobacter freundii Species-level Match Host Order Match	RISB0517	Leptinotarsa decemlineata Order: Coleoptera	affect the cellular and humoral immunity of the insect, increasing its susceptibility to Bacillus thuringiensis var. tenebrionis (morrisoni) (Bt)	0.01%	17.9
Citrobacter freundii complex sp. CFNIH2 Species-level Match Host Order Match	RISB0517	Leptinotarsa decemlineata Order: Coleoptera	affect the cellular and humoral immunity of the insect, increasing its susceptibility to Bacillus thuringiensis var. tenebrionis (morrisoni) (Bt)	0.00%	17.9
Escherichia coli Species-level Match Host Order Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	0.16%	17.9
Morganella morganii Species-level Match Host Order Match	RISB1867	Costelytra zealandica Order: Coleoptera	Female beetles were previously shown to use phenol as their sex pheromone produced by symbiotic bacteria in the accessory or colleterial gland	0.00%	17.8
Citrobacter freundii Species-level Match Host Order Match	RISB0127	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	0.01%	17.7
Sodalis glossinidius Species-level Match Host Order Match	RISB2588	Sitophilus zeamais Order: Coleoptera	maintains and expresses inv/spa genes encoding a type III secretion system homologous to that used for invasion by bacterial pathogens	0.00%	17.7
Acinetobacter sp. Colony158 Species-level Match Host Order Match	RISB0706	Curculio chinensis Order: Coleoptera	facilitate the degradation of tea saponin; genome contains 47 genes relating to triterpenoids degradation	0.01%	17.1
Candidatus Sodalis pierantonius Species-level Match Host Order Match	RISB0972	Sitophilus oryzae Order: Coleoptera	produce vitamins and essential amino acids required for insect development and cuticle biosynthesis	0.00%	17.0
Pseudomonas aeruginosa Species-level Match Host Order Match	RISB0364	Pagiophloeus tsushimanus Order: Coleoptera	terpenoid-degrading: the highest degradation rates of D-camphor, linalool, and eucalyptol	0.10%	16.9
Morganella morganii Species-level Match Host Order Match	RISB1548	Costelytra zealandica Order: Coleoptera	symbionts residing in the colleterial glands produce phenol 1 as the female sex pheromone	0.00%	16.8
Morganella morganii Species-level Match Host Order Match	RISB1868	Costelytra zealandica Order: Coleoptera	produces phenol as the sex pheromone of the host from tyrosine in the colleterial gland	0.00%	16.7
Delftia sp. DS1230 Species-level Match Host Order Match	RISB0806	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-19 oxidation pathway	0.10%	16.5
Delftia sp. WY8 Species-level Match Host Order Match	RISB0806	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-19 oxidation pathway	0.05%	16.5
Delftia sp. HK171 Species-level Match Host Order Match	RISB0806	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-19 oxidation pathway	0.04%	16.5
Acinetobacter sp. Colony158 Species-level Match Host Order Match	RISB0804	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-11 oxidation pathway	0.01%	16.4
Klebsiella sp. WP8-S18-ESBL-06 Species-level Match Host Order Match	RISB0809	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-17 oxidation pathway	0.01%	16.4
Klebsiella sp. CTHL.F3a Species-level Match Host Order Match	RISB0809	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-17 oxidation pathway	0.00%	16.4
Kosakonia sp. SMBL-WEM22 Species-level Match Host Order Match	RISB0810	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-16 oxidation pathway	0.00%	16.4
Rahnella Host Order Match	RISB1623	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.00%	14.8
Rahnella Host Order Match	RISB1800	Dendroctonus valens Order: Coleoptera	could alleviate or compromise the antagonistic effects of fungi O. minus and L. procerum on RTB larval growth	0.00%	12.2
Rahnella Host Order Match	RISB0741	Dendroctonus ponderosae Order: Coleoptera	R. aquatilis decreased (−)-α-pinene (38%) and (+)-α-pinene (46%) by 40% and 45% (by GC-MS), respectively	0.00%	12.1
Rhizobium Host Order Match	RISB0135	Coccinella septempunctata Order: Coleoptera	be commonly found in plant roots and they all have nitrogen fixation abilities	0.00%	11.6
Vibrio Host Order Match	RISB1810	Monochamus galloprovincialis Order: Coleoptera	Have the ability for degradation of cellulose, proteins and starch	0.00%	11.3
Mycobacterium Host Order Match	RISB1156	Nicrophorus concolor Order: Coleoptera	produces Antimicrobial compounds	0.00%	10.6
Aeromonas Host Order Match	RISB1145	Tenebrio molitor Order: Coleoptera	degrading plastics	0.00%	10.4
Buchnera aphidicola Species-level Match	RISB0236	Acyrthosiphon pisum Order: Hemiptera	Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival	0.00%	10.0
Buchnera aphidicola Species-level Match	RISB2485	Macrosiphum euphorbiae Order: Hemiptera	symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance	0.00%	9.8
Escherichia coli Species-level Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	0.16%	9.5
Buchnera aphidicola Species-level Match	RISB0685	Acyrthosiphon pisum Order: Hemiptera	It supplies the host with vitamins and essential amino acids, such as arginine and methionine that aphids cannot synthesize or derive insufficiently from their diet, the phloem sap of plants	0.00%	8.8
Xanthomonas sp. CFBP 8445 Species-level Match	RISB0498	Xylocopa appendiculata Order: Hymenoptera	Xanthomonas strain from Japanese carpenter bee is effective PU-degradable bacterium and is able to use polyacryl-based PU as a nutritional source, as well as other types of PS-PU and PE-PU	0.00%	8.8
Burkholderia cepacia Species-level Match	RISB0709	Nilaparvata lugens Order: Hemiptera	BsNLG8 significantly inhibited the growth of phytopathogenic fungi and also demonstrated the ability to produce siderophores, which explains its antagonistic mechanism.	0.00%	8.4
Xanthomonas sp. CFBP 8445 Species-level Match	RISB0217	Xylocopa appendiculata Order: Hymenoptera	strains biodegraded polyethylene terephthalate PET powder, broke it into its degradation products	0.00%	6.9
Leclercia adecarboxylata Species-level Match	RISB1757	Spodoptera frugiperda Order: Lepidoptera	degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn	0.01%	6.8
Burkholderia cepacia Species-level Match	RISB0089	Nilaparvata lugens Order: Hemiptera	immune gene Defensin A contribute to the resistance against Nicotine-induced stress in host	0.00%	6.8
Sphingomonas sp. LK11 Species-level Match	RISB0134	Spodoptera frugiperda Order: Lepidoptera	provide a protective effect to against chlorantraniliprole stress to S. frugiperda	0.00%	6.6
Leclercia adecarboxylata Species-level Match	RISB1758	Spodoptera frugiperda Order: Lepidoptera	may influence the metabolization of pesticides in insects	0.01%	6.2
Escherichia coli Species-level Match	RISB2120	Galleria mellonella Order: Lepidoptera	mediate trans-generational immune priming	0.16%	6.0
Raoultella sp. HC6 Species-level Match	RISB1575	Bactrocera tau Order: Diptera	could attract male and female B. tau	0.00%	5.7
Chryseobacterium sp. MYb264 Species-level Match	RISB2092	Aedes aegypti Order: Diptera	axenic larvae cannot develop	0.01%	5.6
Chryseobacterium sp. Y16C Species-level Match	RISB2092	Aedes aegypti Order: Diptera	axenic larvae cannot develop	0.00%	5.6
Microbacterium sp. ProA8 Species-level Match	RISB2095	Aedes aegypti Order: Diptera	axenic larvae cannot develop	0.00%	5.6
Salmonella enterica Species-level Match	RISB0413	Melanaphis sacchari Order: Hemiptera	None	0.05%	5.1
Erwinia amylovora Species-level Match	RISB0403	Anaphes nitens Order: Hymenoptera	None	0.02%	5.0
Sphingobacterium multivorum Species-level Match	RISB0671	Melanaphis bambusae Order: Hemiptera	None	0.01%	5.0
Burkholderia cepacia Species-level Match	RISB2389	Apis mellifera Order: Hymenoptera	None	0.00%	5.0
Erwinia aphidicola Species-level Match	RISB1705	Phlebotomus papatasi Order: Diptera	None	0.00%	5.0
Agrobacterium tumefaciens Species-level Match	RISB0650	Melanaphis bambusae Order: Hemiptera	None	0.00%	5.0
Pectobacterium	RISB1889	Pseudococcus longispinus Order: Hemiptera	a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids	0.01%	3.4
Leucobacter	RISB0771	Delia antiqua Order: Diptera	showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.00%	3.3
Yersinia	RISB0492	Cimex hemipterus Order: Hemiptera	the disruption of the abundant Yersinia possibly could be related to the enhanced susceptibility towards the insecticides	0.01%	2.4
Variovorax	RISB2153	Osmia bicornis Order: Hymenoptera	may be essential to support Osmia larvae in their nutrient uptake	0.00%	1.3
Pectobacterium	RISB0798	Pseudoregma bambucicola Order: Hemiptera	may help P. bambucicola feed on the stalks of bamboo	0.01%	1.1
Dickeya	RISB1086	Rhodnius prolixus Order: Hemiptera	supply enzymatic biosynthesis of B-complex vitamins	0.02%	1.0
Aeromonas	RISB2456	Bombyx mori Order: Lepidoptera	able to utilize the CMcellulose and xylan	0.00%	0.8
Cedecea	RISB1570	Bactrocera tau Order: Diptera	could attract male and female B. tau	0.00%	0.7
Aeromonas	RISB2086	Aedes aegypti Order: Diptera	axenic larvae cannot develop	0.00%	0.6
Achromobacter	RISB1869	Aedes aegypti Order: Diptera	gut microbiome	0.04%	0.3
Leucobacter	RISB1876	Aedes aegypti Order: Diptera	gut microbiome	0.00%	0.3
Ralstonia	RISB0243	Spodoptera frugiperda Order: Lepidoptera	None	0.08%	0.1
Achromobacter	RISB0383	Aphis gossypii Order: Hemiptera	None	0.04%	0.0
Pectobacterium	RISB1772	Muscidae Order: Diptera	None	0.01%	0.0
Yersinia	RISB0407	Anaphes nitens Order: Hymenoptera	None	0.01%	0.0
Variovorax	RISB1712	Phlebotomus papatasi Order: Diptera	None	0.00%	0.0
Cedecea	RISB0504	Plutella xylostella Order: Lepidoptera	None	0.00%	0.0
Gibbsiella	RISB1320	Vespa mandarinia Order: Hymenoptera	None	0.00%	0.0
Cupriavidus	RISB0694	Alydus tomentosus Order: Hemiptera	None	0.00%	0.0
Acidobacterium	RISB1136	Coptotermes Order: Blattodea	None	0.00%	0.0