SRR24019326 - Ochlerotatus serratus

Basic Information

Run: SRR24019326

Assay Type: WGS

Bioproject: PRJNA947063

Biosample: SAMN33837850

Bytes: 1380692761

Center Name: EVANDRO CHAGAS INSTITUTE

Sequencing Information

Instrument: NextSeq 500

Library Layout: PAIRED

Library Selection: unspecified

Platform: ILLUMINA

Geographic Information

Country: Brazil

Continent: South America

Location Name: Brazil: Maranhao

Latitude/Longitude: -

Sample Information

Host: Ochlerotatus serratus

Isolation: -

Biosample Model: Invertebrate

Collection Date: 2021-10-20

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Klebsiella pneumoniae
RISB1771
Muscidae
Order: Diptera
None
31.61%
46.6
Klebsiella pneumoniae
RISB2185
Scirpophaga incertulas
Order: Lepidoptera
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
31.61%
41.6
Klebsiella pneumoniae
RISB2459
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
31.61%
37.6
Stenotrophomonas maltophilia
RISB1227
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
19.47%
37.2
Stenotrophomonas maltophilia
RISB1141
Hermetia illucens
Order: Diptera
enhance the insect growth performance when reared on an unbalanced nutritionally poor diet
19.47%
36.3
Stenotrophomonas maltophilia
RISB1401
Delia antiqua
Order: Diptera
suppressed Beauveria bassiana conidia germination and hyphal growth
19.47%
35.8
Escherichia coli
RISB1769
Calliphoridae
Order: Diptera
None
13.54%
28.5
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
13.54%
22.9
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
13.54%
21.3
Enterobacter sp. T2
RISB0893
Bactrocera dorsalis
Order: Diptera
be beneficial, with some quality control indices, such as adult size, pupal weight, survival rate under stress and nutritionally rich conditions, and mating competitiveness, being significantly increased, while slight nonsignificant increases in emergence rate and flight ability were observed
0.22%
20.2
Lactococcus lactis
RISB0131
Ceratitis capitata
Order: Diptera
The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The  colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.
0.03%
20.0
Enterobacter sp. T2
RISB1338
Ceratitis capitata
Order: Diptera
Enterobacter sp. AA26 dry biomass can fully replace the brewer’s yeast as a protein source in medfly larval diet without any effect on the productivity and the biological quality of reared medfly of VIENNA 8 GSS
0.22%
19.4
Serratia marcescens
RISB1291
Aedes aegypti
Order: Diptera
facilitates arboviral infection through a secreted protein named SmEnhancin, which digests membrane-bound mucins on the mosquito gut epithelia, thereby enhancing viral dissemination.
0.01%
18.7
Lactococcus lactis
RISB0113
Bactrocera dorsalis
Order: Diptera
increase the resistance of B. dorsalis to β-cypermethrin by regulating cytochrome P450 (P450) enzymes and α-glutathione S-transferase (GST) activities
0.03%
18.0
Serratia marcescens
RISB0009
Phormia regina
Order: Diptera
prompted oviposition by flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria
0.01%
17.7
Enterococcus faecalis
RISB1411
Bactrocera dorsalis
Order: Diptera
female Bactrocera dorsalis fed Enterococcus faecalis and Klebsiella oxytoca enriched diets lived longer but had lower fecundity
0.08%
17.6
Enterobacter sp. T2
RISB1311
Ceratitis capitata
Order: Diptera
it was shown to have positive effects in rearing efficiency when used as larval probiotics
0.22%
17.0
Bacillus sp. THAF10
RISB0791
Anopheles barbirostris
Order: Diptera
without this midgut flora showed delayed development to become adult
0.01%
16.4
Enterococcus faecalis
RISB0095
Bactrocera minax
Order: Diptera
egrade phenols in unripe citrus in B. minax larvae
0.08%
16.1
Lactiplantibacillus plantarum
RISB0674
Drosophila melanogaster
Order: Diptera
could effectively inhibit fungal spore germinations
0.02%
16.0
Serratia marcescens
RISB0096
Bactrocera minax
Order: Diptera
egrade phenols in unripe citrus in B. minax larvae
0.01%
16.0
Bacillus thuringiensis
RISB0820
Simulium tani
Order: Diptera
show resistance to some antibiotics
0.09%
15.8
Lactococcus lactis
RISB1167
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.03%
15.6
Acinetobacter sp. PK01
RISB2083
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.02%
15.6
Chryseobacterium sp. SNU WT5
RISB2092
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.01%
15.6
Bacillus cereus
RISB1872
Aedes aegypti
Order: Diptera
gut microbiome
0.18%
15.5
Wolbachia
RISB0766
Aedes fluviatilis
Order: Diptera
The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.
0.16%
15.2
Listeria
RISB2308
Drosophila melanogaster
Order: Diptera
L. monocytogenes infection disrupts host energy metabolism by depleting energy stores (triglycerides and glycogen) and reducing metabolic pathway activity (beta-oxidation and glycolysis). The infection affects antioxidant defense by reducing uric acid levels and alters amino acid metabolism. These metabolic changes are accompanied by melanization, potentially linked to decreased tyrosine levels.
0.05%
15.1
Buchnera aphidicola
RISB0051
Episyrphus balteatus
Order: Diptera
None
0.03%
15.0
Lactiplantibacillus plantarum
RISB0608
Drosophila melanogaster
Order: Diptera
None
0.02%
15.0
Spiroplasma
RISB1796
Drosophila neotestacea
Order: Diptera
when parasitized by the nematode Howardula aoronymphium, Spiroplasma encodes a ribosome-inactivating protein (RIP) related to Shiga-like toxins from enterohemorrhagic Escherichia coli and that Howardula ribosomal RNA (rRNA) is depurinated during Spiroplasma-mediated protection of D. neotestacea
0.02%
15.0
Wolbachia
RISB0779
Drosophila melanogaster
Order: Diptera
Wolbachia infection affects differential gene expression in Drosophila testis.Genes involved in carbohydrate metabolism, lysosomal degradation, proteolysis, lipid metabolism, and immune response were upregulated in the presence of Wolbachia
0.16%
15.0
Wolbachia
RISB1408
Anastrepha fraterculus
Order: Diptera
Wolbachia is the only known reproductive symbiont present in these morphotypes. Wolbachia reduced the ability for embryonic development in crosses involving cured females and infected males within each morphotype (uni-directional CI).
0.16%
14.8
Spiroplasma
RISB1926
Anopheles gambiae
Order: Diptera
may have reproductive interactions with their mosquito hosts,either providing an indirect fitness advantage to females by inducing male killing or by directly protecting the host against natural pathogens
0.02%
14.1
Spiroplasma
RISB2026
Drosophila hydei
Order: Diptera
Spiroplasma protect their host against parasitoid attack. The Spiroplasma-conferred protection is partial and flies surviving a wasp attack have reduced adult longevity and fecundity
0.02%
13.7
Paenibacillus
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.04%
13.3
Rhodococcus
RISB0775
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.01%
13.3
Shewanella
RISB1924
Anopheles gambiae
Order: Diptera
may be related with mediating adaptation to different ecological niches or in shaping specific adult behaviors including mating
0.01%
12.6
Streptomyces sp. T12
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
3.44%
12.4
Streptomyces sp. T12
RISB2334
Sirex noctilio
Order: Hymenoptera
degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide
3.44%
12.1
Komagataeibacter
RISB1883
Drosophila suzukii
Order: Diptera
produce volatile substances that attract female D. suzukii
0.15%
11.3
Streptomyces sp. T12
RISB1134
mud dauber wasp
Order: Hymenoptera
secondary metabolites derived from a Streptomyces sp. displayed significant inhibitory activity against hexokinase II
3.44%
10.8
Paenibacillus
RISB2098
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.04%
10.6
Aeromonas
RISB2086
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.03%
10.6
Rickettsiella
RISB2479
Acyrthosiphon pisum
Order: Hemiptera
changes the insects’ body color from red to green in natural populations, the infection increased amounts of blue-green polycyclic quinones, whereas it had less of an effect on yellow-red carotenoid pigments
6.25%
10.4
Peribacillus
RISB1877
Aedes aegypti
Order: Diptera
gut microbiome
0.04%
10.3
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
0.03%
10.0
Arsenophonus sp. aPb
RISB1047
Aphis gossypii
Order: Hemiptera
secondary symbiont reduction led to reduction of the total life span and intrinsic rate of natural increase as well as appearance of the deformed dead offspring. H. defensa and Arsenophonus contributed to the fitness of A. gossypii by enhancing its performance, but not through parasitoid resistance.
0.01%
10.0
Pseudomonas sp. CIP-10
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.05%
9.9
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
0.03%
9.8
Rickettsiella
RISB2262
Acyrthosiphon pisum
Order: Hemiptera
against this entomopathogen Pandora neoaphidis, reduce mortality and also decrease fungal sporulation on dead aphids which may help protect nearby genetically identical insects
6.25%
9.8
Arsenophonus sp. aPb
RISB1300
Aphis gossypii
Order: Hemiptera
Arsenophonus sp. can have different effects on its hosts, including obligate mutualism in blood-sucking insects, improving the performance of whiteflies, or through facultative mutualism by protecting psyllids against parasitoid attacks.
0.01%
9.8
Acinetobacter sp. PK01
RISB0730
Curculio chinensis
Order: Coleoptera
Acinetobacter sp. in C. chinensis enriched after treating with saponin, and when incubating bacteria with saponin for 72 h, saponin content significantly decreased from 4.054 to 1.867 mg/mL (by 16S rRNA metagenome sequencing and HPLC)
0.02%
9.7
Rickettsiella
RISB1739
Acyrthosiphon pisum
Order: Hemiptera
in an experiment with a single-injected isolate of Rickettsiella sp. wasps were also attracted to plants fed on by aphids without secondary symbionts
6.25%
9.2
Clostridium sp. MD294
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.01%
9.2
Mammaliicoccus sciuri
RISB0075
Bombyx mori
Order: Lepidoptera
could produce a secreted chitinolytic lysozyme (termed Msp1) to damage fungal cell walls,completely inhibit the spore germination of fungal entomopathogens Metarhizium robertsii and Beauveria bassiana
0.00%
9.0
Staphylococcus xylosus
RISB2497
Anticarsia gemmatalis
Order: Lepidoptera
allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean
0.01%
9.0
Acinetobacter sp. PK01
RISB1978
Blattella germanica
Order: Blattodea
gut microbiota contributes to production of VCAs that act as fecal aggregation agents and that cockroaches discriminate among the complex odors that emanate from a diverse microbial community
0.02%
8.8
Pseudomonas sp. CIP-10
RISB2224
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.05%
8.4
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
3.38%
8.4
Sphingobacterium sp. R2
RISB2227
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.01%
8.4
Arsenophonus sp. aPb
RISB1048
Aphis gossypii
Order: Hemiptera
symbiont reduction led to reduction of the total life span and intrinsic rate of natural increase as well as appearance of the deformed dead offspring
0.01%
8.0
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
0.02%
8.0
Proteus vulgaris
RISB0001
Leptinotarsa decemlineata
Order: Coleoptera
produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation
0.01%
7.7
Enterococcus faecalis
RISB0497
Cryptolestes ferrugineus
Order: Coleoptera
bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.
0.08%
7.7
Staphylococcus xylosus
RISB2247
Anticarsia gemmatalis
Order: Lepidoptera
mitigation of the negative effects of proteinase inhibitors produced by the host plant
0.01%
6.7
Pseudomonas sp. CIP-10
RISB0700
Nilaparvata lugens
Order: Hemiptera
Pseudomonas sp. composition and abundance correlated with BPH survivability
0.05%
6.6
Staphylococcus xylosus
RISB2246
Anticarsia gemmatalis
Order: Lepidoptera
Against plant-derived protease inhibitor; pest control
0.01%
6.1
Proteus vulgaris
RISB2460
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.01%
6.0
Burkholderia
RISB1172
Lagria villosa
Order: Coleoptera
process a cryptic gene cluster that codes for the biosynthesis of a novel antifungal polyketide with a glutarimide pharmacophore, which led to the discovery of the gladiofungins as previously-overlooked components of the antimicrobial armory of the beetle symbiont
0.94%
5.9
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
0.02%
5.7
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
0.02%
5.4
Burkholderia
RISB1729
Lagria hirta
Order: Coleoptera
the symbionts inhibit the growth of antagonistic fungi on the eggs of the insect host, indicating that the Lagria-associated Burkholderia have evolved from plant pathogenic ancestors into insect defensive mutualists
0.94%
5.2
Burkholderia
RISB0402
Riptortus pedestris
Order: Hemiptera
symbiont colonization induces the development of the midgut crypts via finely regulating the enterocyte cell cycles, enabling it to stably and abundantly colonize the generated spacious crypts of the bean bug host
0.94%
5.2
Rhizobium
RISB0135
Coccinella septempunctata
Order: Coleoptera
be commonly found in plant roots and they all have nitrogen fixation abilities
3.64%
5.2
Paenibacillus
RISB2195
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.04%
5.0
Flavobacterium johnsoniae
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
0.01%
5.0
Candidatus Erwinia haradaeae
RISB1632
Lachninae
Order: Hemiptera
None
0.00%
5.0
Halomonas
RISB1808
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
3.40%
4.7
Halomonas
RISB1374
Bemisia tabaci
Order: Hemiptera
None
3.40%
3.4
Bartonella
RISB1673
Apis mellifera
Order: Hymenoptera
a gut symbiont of insects and that the adaptation to blood-feeding insects facilitated colonization of the mammalian bloodstream
0.01%
2.6
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
1.00%
2.3
Bacteroides
RISB0256
Leptocybe invasa
Order: Hymenoptera
Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa
0.02%
2.3
Liberibacter
RISB2310
Bactericerca cockerelli
Order: Hemiptera
manipulate plant signaling and defensive responses, suppress accumulation of defense transcripts like JA and SA
0.00%
2.3
Bacteroides
RISB0090
Hyphantria cunea
Order: Lepidoptera
enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.
0.02%
2.1
Bacteroides
RISB1183
Oryzaephilus surinamensis
Order: Coleoptera
supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host
0.02%
2.1
Streptococcus
RISB2625
Galleria mellonella
Order: Lepidoptera
suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme
0.03%
2.1
Corynebacterium
RISB0363
Pagiophloeus tsushimanus
Order: Coleoptera
terpenoid-degrading: the highest degradation rates of D-camphor, linalool, and eucalyptol
0.18%
2.0
Rhodococcus
RISB0430
Rhodnius prolixus
Order: Hemiptera
Rhodnius prolixus harbouring R. rhodnii developed faster, had higher survival, and laid more eggs
0.01%
2.0
Corynebacterium
RISB0531
Helicoverpa armigera
Order: Lepidoptera
Corynebacterium sp. 2-TD, mediates the toxicity of the 2-tridecanone to H. armigera
0.18%
1.8
Streptococcus
RISB2624
Reticulitermes flavipes
Order: Blattodea
can be broken down into substances such as carbon dioxide, ammonia and acetic acid
0.03%
1.7
Liberibacter
RISB2524
Bactericera cockerelli
Order: Hemiptera
Reduced expression of plant defensive gene in tomato probably for psyllid success
0.00%
1.6
Nostoc
RISB0812
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-18 oxidation pathway
0.01%
1.4
Streptococcus
RISB2604
Homona magnanima
Order: Lepidoptera
influence the growth of Bacillus thuringiensis in the larvae
0.03%
1.2
Paraclostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.01%
1.1
Rhodococcus
RISB1087
Rhodnius prolixus
Order: Hemiptera
supply enzymatic biosynthesis of B-complex vitamins
0.01%
1.0
Corynebacterium
RISB2360
Bombyx mori
Order: Lepidoptera
producing lipase in a gut environment
0.18%
0.9
Liberibacter
RISB2333
Cacopsylla pyri
Order: Hemiptera
behaves as an endophyte rather than a pathogen
0.00%
0.9
Aeromonas
RISB2456
Bombyx mori
Order: Lepidoptera
able to utilize the CMcellulose and xylan
0.03%
0.9
Mycobacterium
RISB1156
Nicrophorus concolor
Order: Coleoptera
produces Antimicrobial compounds
0.12%
0.8
Aeromonas
RISB1145
Tenebrio molitor
Order: Coleoptera
degrading plastics
0.03%
0.4
Priestia
RISB0839
Helicoverpa armigera
Order: Lepidoptera
producing amylase
0.02%
0.4
Legionella
RISB1687
Polyplax serrata
Order: Phthiraptera
None
0.02%
0.0
Ralstonia
RISB0243
Spodoptera frugiperda
Order: Lepidoptera
None
0.02%
0.0
Cupriavidus
RISB0694
Alydus tomentosus
Order: Hemiptera
None
0.02%
0.0
Neisseria
RISB0512
Plutella xylostella
Order: Lepidoptera
None
0.02%
0.0
Helicobacter
RISB0662
Melanaphis bambusae
Order: Hemiptera
None
0.01%
0.0

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