SRR23076819 - Okanagana oregona

Basic Information

Run: SRR23076819

Assay Type: WGS

Bioproject: PRJNA923375

Biosample: SAMN32721597

Bytes: 1963255949

Center Name: ARIZONA STATE UNIVERSITY

Sequencing Information

Instrument: Illumina HiSeq X

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Mt. Sentinel\, Missoula\, Montana

Latitude/Longitude: 46.86 N 113.98 W

Sample Information

Host: Okanagana oregona

Isolation: -

Biosample Model: MIMS.me,MIGS/MIMS/MIMARKS.host-associated

Collection Date: 2017-06-30

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Candidatus Karelsulcia muelleri Species-level Match Host Order Match	RISB1591	Philaenus spumarius Order: Hemiptera	None	94.27%	109.3
Buchnera aphidicola Species-level Match Host Order Match	RISB0236	Acyrthosiphon pisum Order: Hemiptera	Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival	0.08%	20.1
Candidatus Walczuchella monophlebidarum Species-level Match Host Order Match	RISB2075	Llaveia axin axin Order: Hemiptera	could be supplying most of these precursors for the amino acid biosynthesis as it has the potential to make ribulose-5P from ribose-1P and also PEP and pyruvate from glycolysis. It is also capable of producing homocysteine from homoserine for methionine biosynthesis,	0.02%	20.0
Buchnera aphidicola Species-level Match Host Order Match	RISB2485	Macrosiphum euphorbiae Order: Hemiptera	symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance	0.08%	19.8
Clostridium sp. DL-VIII Species-level Match Host Order Match	RISB2301	Pyrrhocoris apterus Order: Hemiptera	could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet	0.01%	19.2
Candidatus Carsonella ruddii Species-level Match Host Order Match	RISB0394	Cacopsylla pyricola Order: Hemiptera	Carsonella produces most essential amino acids (EAAs) for C. pyricola, Psyllophila complements the genes missing in Carsonella for the tryptophan pathway and synthesizes some vitamins and carotenoids	0.02%	19.0
Buchnera aphidicola Species-level Match Host Order Match	RISB0685	Acyrthosiphon pisum Order: Hemiptera	It supplies the host with vitamins and essential amino acids, such as arginine and methionine that aphids cannot synthesize or derive insufficiently from their diet, the phloem sap of plants	0.08%	18.9
Lactococcus lactis Species-level Match Host Order Match	RISB0337	Riptortus pedestris Order: Hemiptera	can be utilized as a novel probiotic which increase the survival rate of insects	0.03%	16.6
Enterococcus faecalis Species-level Match Host Order Match	RISB0336	Riptortus pedestris Order: Hemiptera	can be utilized as a novel probiotic which increase the survival rate of insects	0.02%	16.6
Pseudomonas sp. CIP-10 Species-level Match Host Order Match	RISB0700	Nilaparvata lugens Order: Hemiptera	Pseudomonas sp. composition and abundance correlated with BPH survivability	0.09%	16.6
Pseudomonas sp. G11 Species-level Match Host Order Match	RISB0700	Nilaparvata lugens Order: Hemiptera	Pseudomonas sp. composition and abundance correlated with BPH survivability	0.04%	16.5
Candidatus Walczuchella monophlebidarum Species-level Match Host Order Match	RISB2074	Llaveia axin axin Order: Hemiptera	may provide metabolic precursors to the flavobacterial endosymbiont	0.02%	16.4
Salmonella enterica Species-level Match Host Order Match	RISB0413	Melanaphis sacchari Order: Hemiptera	None	0.12%	15.1
Escherichia coli Species-level Match Host Order Match	RISB0412	Melanaphis sacchari Order: Hemiptera	None	0.11%	15.1
Burkholderia Host Order Match	RISB1327	Riptortus pedestris Order: Hemiptera	fed with specific nutrients and also recycles host metabolic wastes in the insect gut, and in return, the bacterial symbiont provides the host with essential nutrients limited in the insect food, contributing to the rapid growth and enhanced reproduction of the bean bug host.	0.05%	15.1
Candidatus Carsonella ruddii Species-level Match Host Order Match	RISB0748	Diaphorina citri Order: Hemiptera	None	0.02%	15.0
Candidatus Erwinia haradaeae Species-level Match Host Order Match	RISB1632	Lachninae Order: Hemiptera	None	0.01%	15.0
Burkholderia Host Order Match	RISB0402	Riptortus pedestris Order: Hemiptera	symbiont colonization induces the development of the midgut crypts via finely regulating the enterocyte cell cycles, enabling it to stably and abundantly colonize the generated spacious crypts of the bean bug host	0.05%	14.3
Burkholderia Host Order Match	RISB0221	Riptortus pedestris Order: Hemiptera	symbiont modulates Kr-h1 expression to enhance ovarian development and egg production of R. pedestris by increasing the biosynthesis of the two reproduction-associated proteins, hexamerin-α and vitellogenin	0.05%	14.2
Wolbachia Host Order Match	RISB1444	Laodelphax striatellus Order: Hemiptera	Wolbachia-infected host embryonic development genes revealed Ddx1 mRNAs, which is required for host viability and in the germ line, accumulated in the posterior region of 3-day-old embryos	0.18%	13.9
Wolbachia Host Order Match	RISB1539	Cimex lectularius Order: Hemiptera	wCle provisions the bed bug with B vitamins.It is likely that because of wCle’s nutritional contribution to the bed bug, its titer increases in relation to bed bug growth and development.	0.18%	13.9
Spiroplasma Host Order Match	RISB1737	Acyrthosiphon pisum Order: Hemiptera	injected two Spiroplasma isolates into secondary symbiont-free aphids and found that wasps showed a significant preference for plants previously attacked by aphids without this symbiont	0.02%	13.7
Spiroplasma Host Order Match	RISB2263	Acyrthosiphon pisum Order: Hemiptera	against this entomopathogen Pandora neoaphidis, reduce mortality and also decrease fungal sporulation on dead aphids which may help protect nearby genetically identical insects	0.02%	13.5
Spiroplasma Host Order Match	RISB0842	Dactylopius coccus Order: Hemiptera	use the T4SS to interact with the Dactylopius cells, which show a strong interaction and molecular signaling in the symbiosis	0.02%	12.5
Wolbachia Host Order Match	RISB0491	Cimex hemipterus Order: Hemiptera	the disruption of the abundant Wolbachia could be related to the enhanced susceptibility towards the insecticides	0.18%	12.4
Yersinia Host Order Match	RISB0492	Cimex hemipterus Order: Hemiptera	the disruption of the abundant Yersinia possibly could be related to the enhanced susceptibility towards the insecticides	0.02%	12.4
Bacillus cereus Species-level Match	RISB2161	Termitidae Order: Blattodea	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.20%	10.2
Flavobacterium Host Order Match	RISB0659	Melanaphis bambusae Order: Hemiptera	None	0.14%	10.1
Bacillus thuringiensis Species-level Match	RISB2177	Armadillidae Order: Isopoda	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.12%	10.1
Achromobacter Host Order Match	RISB0383	Aphis gossypii Order: Hemiptera	None	0.12%	10.1
Klebsiella pneumoniae Species-level Match	RISB2185	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.06%	10.1
Lactococcus lactis Species-level Match	RISB0131	Ceratitis capitata Order: Diptera	The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.	0.03%	10.0
Bacillus sp. FJAT-22090 Species-level Match	RISB2178	Termitidae Order: Blattodea	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.02%	10.0
Sphingobacterium Host Order Match	RISB0671	Melanaphis bambusae Order: Hemiptera	None	0.02%	10.0
Cupriavidus Host Order Match	RISB0694	Alydus tomentosus Order: Hemiptera	None	0.02%	10.0
Helicobacter Host Order Match	RISB0662	Melanaphis bambusae Order: Hemiptera	None	0.02%	10.0
Paenibacillus polymyxa Species-level Match	RISB2195	Termitidae Order: Blattodea	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.01%	10.0
Pseudomonas sp. CIP-10 Species-level Match	RISB1622	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.09%	9.9
Acinetobacter sp. NCu2D-2 Species-level Match	RISB0730	Curculio chinensis Order: Coleoptera	Acinetobacter sp. in C. chinensis enriched after treating with saponin, and when incubating bacteria with saponin for 72 h, saponin content significantly decreased from 4.054 to 1.867 mg/mL (by 16S rRNA metagenome sequencing and HPLC)	0.01%	9.7
Escherichia coli Species-level Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	0.11%	9.4
Mammaliicoccus sciuri Species-level Match	RISB0075	Bombyx mori Order: Lepidoptera	could produce a secreted chitinolytic lysozyme (termed Msp1) to damage fungal cell walls，completely inhibit the spore germination of fungal entomopathogens Metarhizium robertsii and Beauveria bassiana	0.02%	9.0
Streptomyces sp. T12 Species-level Match	RISB0943	Polybia plebeja Order: Hymenoptera	this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans	0.04%	9.0
Streptomyces sp. WAC00303 Species-level Match	RISB0943	Polybia plebeja Order: Hymenoptera	this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans	0.01%	9.0
Acinetobacter sp. NCu2D-2 Species-level Match	RISB1978	Blattella germanica Order: Blattodea	gut microbiota contributes to production of VCAs that act as fecal aggregation agents and that cockroaches discriminate among the complex odors that emanate from a diverse microbial community	0.01%	8.8
Streptomyces sp. T12 Species-level Match	RISB2334	Sirex noctilio Order: Hymenoptera	degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide	0.04%	8.7
Lactococcus lactis Species-level Match	RISB0967	Oulema melanopus Order: Coleoptera	contribute to the decomposition of complex carbohydrates, fatty acids, or polysaccharides in the insect gut. It might also contribute to the improvement of nutrient availability.	0.03%	8.6
Paenibacillus sp. PK4536 Species-level Match	RISB0774	Delia antiqua Order: Diptera	showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.04%	8.3
Paenibacillus sp. MMS20-IR301 Species-level Match	RISB0774	Delia antiqua Order: Diptera	showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.01%	8.3
Acinetobacter sp. NCu2D-2 Species-level Match	RISB1500	Lymantria dispar Order: Lepidoptera	Bacteria isolated from a host plant had a glycoside-degrading activity, which enhanced growth of the moth when larvae were fed on a toxin-containing diet	0.01%	8.1
Blattabacterium cuenoti Species-level Match	RISB0133	Panesthiinae Order: Blattodea	enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life	0.12%	8.1
Escherichia coli Species-level Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	0.11%	7.8
Enterococcus faecalis Species-level Match	RISB0497	Cryptolestes ferrugineus Order: Coleoptera	bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.	0.02%	7.6
Enterococcus faecalis Species-level Match	RISB1411	Bactrocera dorsalis Order: Diptera	female Bactrocera dorsalis fed Enterococcus faecalis and Klebsiella oxytoca enriched diets lived longer but had lower fecundity	0.02%	7.6
Enterobacter cloacae Species-level Match	RISB1699	Plutella xylostella Order: Lepidoptera	play an important role in the breakdown of plant cell walls, detoxification of plant phenolics, and synthesis of amino acids.	0.03%	7.5
Apilactobacillus kunkeei Species-level Match	RISB0475	Apis mellifera Order: Hymenoptera	A. kunkeei alleviated acetamiprid-induced symbiotic microbiota dysregulation and mortality in honeybees	0.01%	7.1
Enterobacter cloacae Species-level Match	RISB2217	Thermobia domestica Order: Zygentoma	Mediated by two microbial symbiont, the firebat saggregates in response to the faeces of conspecifics	0.03%	7.1
Enterobacter cloacae Species-level Match	RISB1428	Rhynchophorus ferrugineus Order: Coleoptera	promote the development and body mass gain of RPW larvae by improving their nutrition metabolism	0.03%	7.0
Klebsiella pneumoniae Species-level Match	RISB2459	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.06%	6.1
Blattabacterium cuenoti Species-level Match	RISB0518	Cryptocercus punctulatus Order: Blattodea	collaborative arginine biosynthesis	0.12%	5.8
Klebsiella pneumoniae Species-level Match	RISB1994	Diatraea saccharalis Order: Lepidoptera	possess cellulose degrading activity	0.06%	5.8
Chryseobacterium sp. 3008163 Species-level Match	RISB2092	Aedes aegypti Order: Diptera	axenic larvae cannot develop	0.05%	5.6
Chryseobacterium sp. Chry.R1 Species-level Match	RISB2092	Aedes aegypti Order: Diptera	axenic larvae cannot develop	0.02%	5.6
Blattabacterium cuenoti Species-level Match	RISB0093	Blattella germanica Order: Blattodea	obligate endosymbiont	0.12%	5.5
Staphylococcus epidermidis Species-level Match	RISB1070	Oryctes rhinoceros Order: Coleoptera	gut microbe	0.03%	5.3
Lactobacillus	RISB1866	Drosophila melanogaster Order: Diptera	The bacterial cells may thus be able to ameliorate the pH of the acidic region, by the release of weak bases.Additionally, the bacteria have a complex relationship with physiological processes which may affect ionic homeostasis in the gut, such as nutrition and immune function	0.06%	5.1
Lactobacillus	RISB0292	Lymantria dispar asiatica Order: Lepidoptera	Beauveria bassiana infection-based assays showed that the mortality of non-axenic L. dispar asiatica larvae was significantly higher than that of axenic larvae at 72 h.	0.06%	3.4
Sphingobacterium	RISB2227	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.02%	3.4
Candidatus Blochmanniella	RISB2542	Camponotus Order: Hymenoptera	Blochmannia provide essential amino acids to its host,Camponotus floridanus, and that it may also play a role in nitrogen recycling via its functional urease	0.02%	3.2
Candidatus Blochmanniella	RISB1827	Camponotus floridanus Order: Hymenoptera	a modulation of immune gene expression which may facilitate tolerance towards the endosymbionts and thus may contribute to their transovarial transmission	0.02%	3.1
Lactobacillus	RISB0715	Spodoptera frugiperda Order: Lepidoptera	Have the function of nutrient absorption, energy metabolism, the plant’s secondary metabolites degradation, insect immunity regulation, and so on	0.06%	3.0
Candidatus Blochmanniella	RISB2448	Camponotus floridanus Order: Hymenoptera	nutritional contribution of the bacteria to host metabolism by production of essential amino acids and urease-mediated nitrogen recycling	0.02%	2.8
Sphingobacterium	RISB1226	Delia antiqua Order: Diptera	six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids	0.02%	2.7
Proteus	RISB0001	Leptinotarsa decemlineata Order: Coleoptera	produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation	0.02%	2.7
Bartonella	RISB1673	Apis mellifera Order: Hymenoptera	a gut symbiont of insects and that the adaptation to blood-feeding insects facilitated colonization of the mammalian bloodstream	0.02%	2.6
Bacteroides	RISB0256	Leptocybe invasa Order: Hymenoptera	Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa	0.03%	2.3
Coprococcus	RISB0092	Hyphantria cunea Order: Lepidoptera	enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.	0.04%	2.2
Bacteroides	RISB0090	Hyphantria cunea Order: Lepidoptera	enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.	0.03%	2.2
Blautia	RISB0091	Hyphantria cunea Order: Lepidoptera	enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.	0.03%	2.2
Proteus	RISB2315	Aedes aegypti Order: Diptera	upregulates AMP gene expression, resulting in suppression of DENV infection in the mosquito gut epithelium	0.02%	2.1
Bacteroides	RISB1183	Oryzaephilus surinamensis Order: Coleoptera	supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host	0.03%	2.1
Streptococcus	RISB2625	Galleria mellonella Order: Lepidoptera	suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme	0.03%	2.1
Streptococcus	RISB2624	Reticulitermes flavipes Order: Blattodea	can be broken down into substances such as carbon dioxide, ammonia and acetic acid	0.03%	1.7
Lactiplantibacillus	RISB1465	Drosophila melanogaster Order: Diptera	L. plantarum increases its growth-promotion ability by adapting to Drosophila diet	0.02%	1.7
Rhizobium	RISB0135	Coccinella septempunctata Order: Coleoptera	be commonly found in plant roots and they all have nitrogen fixation abilities	0.07%	1.6
Bradyrhizobium	RISB0135	Coccinella septempunctata Order: Coleoptera	be commonly found in plant roots and they all have nitrogen fixation abilities	0.02%	1.6
Nostoc	RISB0812	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-18 oxidation pathway	0.01%	1.4
Vibrio	RISB1810	Monochamus galloprovincialis Order: Coleoptera	Have the ability for degradation of cellulose, proteins and starch	0.08%	1.4
Streptococcus	RISB2604	Homona magnanima Order: Lepidoptera	influence the growth of Bacillus thuringiensis in the larvae	0.03%	1.2
Paraclostridium	RISB0028	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	0.04%	1.1
Lactiplantibacillus	RISB0674	Drosophila melanogaster Order: Diptera	could effectively inhibit fungal spore germinations	0.02%	1.0
Proteus	RISB2460	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.02%	1.0
Mycobacterium	RISB1156	Nicrophorus concolor Order: Coleoptera	produces Antimicrobial compounds	0.05%	0.7
Achromobacter	RISB1869	Aedes aegypti Order: Diptera	gut microbiome	0.12%	0.4
Priestia	RISB0839	Helicoverpa armigera Order: Lepidoptera	producing amylase	0.06%	0.4
Neisseria	RISB0512	Plutella xylostella Order: Lepidoptera	None	0.08%	0.1
Legionella	RISB1687	Polyplax serrata Order: Phthiraptera	None	0.03%	0.0
Yersinia	RISB0407	Anaphes nitens Order: Hymenoptera	None	0.02%	0.0
Lactiplantibacillus	RISB0608	Drosophila melanogaster Order: Diptera	None	0.02%	0.0
Vagococcus	RISB0042	Aldrichina grahami Order: Diptera	None	0.01%	0.0
Chroococcidiopsis	RISB0487	Ceratitis capitata Order: Diptera	None	0.01%	0.0