SRR22996338 - Sitophilus oryzae
Basic Information
Run: SRR22996338
Assay Type: RNA-Seq
Bioproject: PRJNA918957
Biosample: SAMN32610349
Bytes: 3976815031
Center Name: UMR INRAE-INSA DE LYON, BIOLOGIE FONCTIONNELLE, INSECTES ET INTERACTIONS (BF2I)
Sequencing Information
Instrument: Illumina HiSeq 4000
Library Layout: PAIRED
Library Selection: Oligo-dT
Platform: ILLUMINA
Geographic Information
Country: France
Continent: Europe
Location Name: France
Latitude/Longitude: -
Sample Information
Host: Sitophilus oryzae
Isolation: rice\, France
Biosample Model: Invertebrate
Collection Date: 2011/12/1
Taxonomic Classification
Taxonomic visualization Not Available
The interactive Krona chart for this metagenome is currently being processed or unavailable for metagenome quality reason. Please check back later or download the raw files below.
Potential Symbionts
About Potential Symbionts
This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:
- Relative abundance in the sample
- Species-level matches with known symbionts
- Host insect order matches with reference records
- Completeness and richness of functional records
Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:
- Relative abundance in sample
- Species-level matches with known symbionts
- Host insect order matches
- Functional record completeness
Note: Showing top 3 highest scoring records for each species/genus
| Symbiont Name | Record | Host Species | Function | Abundance |
Score
Score Composition:
Higher scores indicate stronger symbiotic relationship potential |
|---|
Download Files
Files Not Available
The analysis files for this metagenome are currently being processed or filtered for quality reason.
Raw Sequencing Files
Direct download from NCBI SRARaw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.