SRR22520358 - Monochamus alternatus

Basic Information

Run: SRR22520358

Assay Type: WGS

Bioproject: PRJNA907216

Biosample: SAMN31956303

Bytes: 1943415935

Center Name: FUJIAN AGRICULTURE AND FORESTRY UNIVERSITY

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: China

Continent: Asia

Location Name: China: Fujian6

Latitude/Longitude: -

Sample Information

Host: Monochamus alternatus

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2022-10

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Klebsiella pneumoniae
RISB1153
Tenebrio molitor
Order: Coleoptera
degrading plastics
21.31%
36.7
Klebsiella pneumoniae
RISB2185
Scirpophaga incertulas
Order: Lepidoptera
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
21.31%
31.3
Raoultella
RISB1007
Monochamus alternatus
Order: Coleoptera
may help M. alternatus degrade cellulose and pinene
0.22%
31.2
Klebsiella pneumoniae
RISB2459
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
21.31%
27.3
Pantoea sp. At-9b
RISB0736
Psylliodes chrysocephala
Order: Coleoptera
Laboratory-reared and field-collected P. chrysocephala all contained three core genera Pantoea, Acinetobacter and Pseudomonas, and reintroduction of Pantoea sp. Pc8 in antibiotic-fed beetles restored isothiocyanate degradation ability in vivo (by 16S rRNA gene sequencing and LC-MS)
0.03%
20.0
Pseudomonas sp. CIP-10
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
0.05%
19.9
Acinetobacter sp. D009
RISB0730
Curculio chinensis
Order: Coleoptera
Acinetobacter sp. in C. chinensis enriched after treating with saponin, and when incubating bacteria with saponin for 72 h, saponin content significantly decreased from 4.054 to 1.867 mg/mL (by 16S rRNA metagenome sequencing and HPLC)
0.01%
19.7
Lactococcus lactis
RISB0967
Oulema melanopus
Order: Coleoptera
contribute to the decomposition of complex carbohydrates, fatty acids, or polysaccharides in the insect gut. It might also contribute to the improvement of nutrient availability.
0.03%
18.6
Pseudomonas sp. CIP-10
RISB2224
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.05%
18.4
Enterobacter sp. T2
RISB2221
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.03%
18.4
Enterobacter sp. AN-K1
RISB2221
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.02%
18.4
Citrobacter freundii
RISB0517
Leptinotarsa decemlineata
Order: Coleoptera
affect the cellular and humoral immunity of the insect, increasing its susceptibility to Bacillus thuringiensis var. tenebrionis (morrisoni) (Bt)
0.05%
18.0
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
0.14%
17.9
Morganella morganii
RISB1867
Costelytra zealandica
Order: Coleoptera
Female beetles were previously shown to use phenol as their sex pheromone produced by symbiotic bacteria in the accessory or colleterial gland
0.00%
17.8
Citrobacter freundii
RISB0127
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
0.05%
17.8
Proteus vulgaris
RISB0001
Leptinotarsa decemlineata
Order: Coleoptera
produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation
0.01%
17.7
Bacillus subtilis
RISB0494
Sitophilus oryzae
Order: Coleoptera
bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.
0.04%
17.6
Enterobacter sp. T2
RISB0496
Sitophilus oryzae
Order: Coleoptera
bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.
0.03%
17.6
Bacillus sp. N5-665
RISB1645
Osphranteria coerulescens
Order: Coleoptera
The isolate has cellulolytic activity and can hydrolyze CMC, avicel, cellulose and sawdust with broad temperature and pH stability
0.01%
17.6
Enterococcus faecalis
RISB0497
Cryptolestes ferrugineus
Order: Coleoptera
bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.
0.01%
17.6
Enterococcus faecalis
RISB2042
Harpalus pensylvanicus
Order: Coleoptera
E. faecalis facilitate seed consumption by H. pensylvanicus, possibly by contributing digestive enzymes to their host
0.01%
17.4
Acinetobacter sp. D009
RISB0706
Curculio chinensis
Order: Coleoptera
facilitate the degradation of tea saponin; genome contains 47 genes relating to triterpenoids degradation
0.01%
17.1
Serratia marcescens
RISB1295
Nicrophorus vespilloides
Order: Coleoptera
producing antibacterial compound Serrawettin W2, which has antibacterial and nematode-inhibiting effects
0.02%
17.1
Lactococcus lactis
RISB1430
Rhynchophorus ferrugineus
Order: Coleoptera
promote the development and body mass gain of RPW larvae by improving their nutrition metabolism
0.03%
17.0
Serratia marcescens
RISB0365
Pagiophloeus tsushimanus
Order: Coleoptera
terpenoid-degrading: the highest degradation rates of D-camphor, linalool, and eucalyptol
0.02%
16.8
Morganella morganii
RISB1548
Costelytra zealandica
Order: Coleoptera
symbionts residing in the colleterial glands produce phenol 1 as the female sex pheromone
0.00%
16.8
Morganella morganii
RISB1868
Costelytra zealandica
Order: Coleoptera
produces phenol as the sex pheromone of the host from tyrosine in the colleterial gland
0.00%
16.7
Streptomyces sp. T12
RISB0777
Copris tripartitus
Order: Coleoptera
contribute brood ball hygiene by inhibiting fungal parasites in the environment
0.10%
16.7
Streptomyces sp. WAC00303
RISB0777
Copris tripartitus
Order: Coleoptera
contribute brood ball hygiene by inhibiting fungal parasites in the environment
0.03%
16.6
Pseudomonas sp. CIP-10
RISB0815
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-15 oxidation pathway
0.05%
16.5
Pantoea sp. At-9b
RISB0814
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-14 oxidation pathway
0.03%
16.5
Enterococcus faecalis
RISB0374
Tribolium castaneum
Order: Coleoptera
modulates host phosphine resistance by interfering with the redox system
0.01%
16.5
Acinetobacter sp. D009
RISB0804
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-11 oxidation pathway
0.01%
16.4
Bacillus sp. N5-665
RISB0805
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-8 oxidation pathway
0.01%
16.4
Serratia marcescens
RISB1158
Nicrophorus vespilloides
Order: Coleoptera
produces an antibacterial cyclic lipopeptide called serrawettin W2
0.02%
16.3
Wolbachia pipientis
RISB2621
Tribolium confusum
Order: Coleoptera
induces cytoplasmic incompatibility
0.49%
16.2
Stenotrophomonas maltophilia
RISB0139
Tenebrio molitor
Order: Coleoptera
correlated with polyvinyl chloride PVC degradation
0.10%
16.1
Lactococcus lactis
RISB1065
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.03%
15.3
Staphylococcus epidermidis
RISB1070
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.01%
15.2
Staphylococcus hominis
RISB1071
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.00%
15.2
Pantoea agglomerans
RISB1858
Lissorhoptrus oryzophilus
Order: Coleoptera
None
0.01%
15.0
Raoultella
RISB2226
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.22%
13.6
Spiroplasma
RISB0343
Harmonia axyridis
Order: Coleoptera
female ladybirds co-infected with Hesperomyces harmoniae and Spiroplasma had a significantly lower fecundity and hatchability compared to females with only one or no symbiont
0.03%
13.5
Spiroplasma
RISB1483
Brachinus elongatulus
Order: Coleoptera
may manipulate host reproduction (e.g., cause male-killing) or provide resistance to nematodes and/or parasitoid wasps
0.03%
12.4
Bacteroides
RISB1183
Oryzaephilus surinamensis
Order: Coleoptera
supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host
0.05%
12.1
Corynebacterium
RISB0363
Pagiophloeus tsushimanus
Order: Coleoptera
terpenoid-degrading: the highest degradation rates of D-camphor, linalool, and eucalyptol
0.01%
11.8
Rickettsia
RISB1279
Ips sp.
Order: Coleoptera
inducing cytoplasmic incompatibility, resulting in reproductive distortions and hence
0.03%
11.7
Rickettsia
RISB0970
Oulema melanopus
Order: Coleoptera
may be associated with insect reproduction and maturation of their sexual organs
0.03%
11.6
Rickettsia
RISB1954
Sitona obsoletus
Order: Coleoptera
potential defensive properties against he parasitoid Microctonus aethiopoides
0.03%
11.6
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.16%
11.5
Halomonas
RISB1808
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
0.01%
11.3
Cronobacter
RISB0247
Tenebrio molitor
Order: Coleoptera
may be indirectly involved in the digestion of PE
0.02%
11.0
Spiroplasma
RISB0250
Tenebrio molitor
Order: Coleoptera
associated with PE biodegradation
0.03%
10.7
Wolbachia pipientis
RISB0766
Aedes fluviatilis
Order: Diptera
The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.
0.49%
10.5
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
0.07%
10.1
Paenibacillus polymyxa
RISB2195
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.02%
10.0
Gilliamella apicola
RISB0102
Apis mellifera
Order: Hymenoptera
Gilliamella apicola carries the gene for the desaturase FADS2, which is able to metabolize polyunsaturated fatty acids from pollen and synthesize endocannabinoid, a lipogenic neuroactive substance, thereby modulating reward learning and memory in honeybees.
0.00%
10.0
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
0.07%
9.8
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
0.14%
9.5
Clostridium sp. DL-VIII
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.02%
9.2
Clostridium sp. AWRP
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.01%
9.2
Clostridium sp. OS1-26
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.00%
9.2
Stenotrophomonas maltophilia
RISB1122
Bombyx mori
Order: Lepidoptera
facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.
0.10%
9.1
Streptomyces sp. T12
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.10%
9.1
Mammaliicoccus sciuri
RISB0075
Bombyx mori
Order: Lepidoptera
could produce a secreted chitinolytic lysozyme (termed Msp1) to damage fungal cell walls,completely inhibit the spore germination of fungal entomopathogens Metarhizium robertsii and Beauveria bassiana
0.01%
9.0
Buchnera aphidicola
RISB0685
Acyrthosiphon pisum
Order: Hemiptera
It supplies the host with vitamins and essential amino acids, such as arginine and methionine that aphids cannot synthesize or derive insufficiently from their diet, the phloem sap of plants
0.07%
8.9
Burkholderia sp. FERM BP-3421
RISB1501
Riptortus pedestris
Order: Hemiptera
Susceptible insects became resistant via acquisition of pesticide-degrading symbionts from pesticide-sprayed soil. This association could occur only after two-time-spraying on soil
0.01%
8.6
Citrobacter amalonaticus
RISB0192
Hermetia illucens
Order: Diptera
can directly promote the expression of two gene families related to intestinal protein metabolism: Hitryp serine protease trypsin family and Himtp metallopeptidase family
0.01%
8.4
Burkholderia sp. FERM BP-3421
RISB2070
Riptortus pedestris
Order: Hemiptera
Burkholderia sp. did not affect the development of the host insect but the first oviposition time was in approximately 60% compared with a control group
0.01%
8.1
Wolbachia pipientis
RISB1515
Drosophila melanogaster
Order: Diptera
increases the recombination rate observed across two genomic intervals and increases the efficacy of natural selection in hosts
0.49%
8.0
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
0.03%
8.0
Stenotrophomonas maltophilia
RISB1227
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.10%
7.8
Psychrobacter sp. LV10R520-6
RISB1773
Calliphoridae
Order: Diptera
it shows physiological adaptation to survival in warmer temperatures and has been previously associated with food spoilage
0.01%
7.5
Leclercia adecarboxylata
RISB1757
Spodoptera frugiperda
Order: Lepidoptera
degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn
0.01%
6.8
Burkholderia sp. FERM BP-3421
RISB1502
Cavelerius saccharivorus
Order: Hemiptera
Gut symbionts showed a pesticide-degrading activity in vivo and in vitro
0.01%
6.5
Leclercia adecarboxylata
RISB1758
Spodoptera frugiperda
Order: Lepidoptera
may influence the metabolization of pesticides in insects
0.01%
6.2
Proteus vulgaris
RISB2460
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.01%
6.0
Escherichia coli
RISB2120
Galleria mellonella
Order: Lepidoptera
mediate trans-generational immune priming
0.14%
6.0
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
0.03%
5.7
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
0.03%
5.5
Staphylococcus hominis
RISB1881
Aedes aegypti
Order: Diptera
gut microbiome
0.00%
5.3
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
0.12%
5.1
Francisella
RISB1907
Bombyx mori
Order: Lepidoptera
After infection with F. tularensis, the induction of melanization and nodulation, which are immune responses to bacterial infection, were inhibited in silkworms. Pre-inoculation of silkworms with F. tularensis enhanced the expression of antimicrobial peptides and resistance to infection by pathogenic bacteria.
0.04%
5.0
Flavobacterium johnsoniae
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
0.03%
5.0
Candidatus Erwinia haradaeae
RISB1632
Lachninae
Order: Hemiptera
None
0.02%
5.0
Candidatus Karelsulcia muelleri
RISB1591
Philaenus spumarius
Order: Hemiptera
None
0.02%
5.0
Gilliamella apicola
RISB1945
Apis cerana
Order: Hymenoptera
None
0.00%
5.0
Xanthomonas
RISB0498
Xylocopa appendiculata
Order: Hymenoptera
Xanthomonas strain from Japanese carpenter bee is effective PU-degradable bacterium and is able to use polyacryl-based PU as a nutritional source, as well as other types of PS-PU and PE-PU
0.03%
3.8
Shewanella
RISB1924
Anopheles gambiae
Order: Diptera
may be related with mediating adaptation to different ecological niches or in shaping specific adult behaviors including mating
0.01%
2.6
Bacteroides
RISB0256
Leptocybe invasa
Order: Hymenoptera
Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa
0.05%
2.4
Bacteroides
RISB0090
Hyphantria cunea
Order: Lepidoptera
enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.
0.05%
2.2
Nitrosospira
RISB0869
Sirex noctilio
Order: Hymenoptera
might be involved in degrading organic matter and fixing nitrogen occurred exclusively in the larval gut
0.01%
2.1
Streptococcus
RISB2625
Galleria mellonella
Order: Lepidoptera
suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme
0.02%
2.0
Xanthomonas
RISB0217
Xylocopa appendiculata
Order: Hymenoptera
strains biodegraded polyethylene terephthalate PET powder, broke it into its degradation products
0.03%
2.0
Corynebacterium
RISB0531
Helicoverpa armigera
Order: Lepidoptera
Corynebacterium sp. 2-TD, mediates the toxicity of the 2-tridecanone to H. armigera
0.01%
1.7
Streptococcus
RISB2624
Reticulitermes flavipes
Order: Blattodea
can be broken down into substances such as carbon dioxide, ammonia and acetic acid
0.02%
1.7
Raoultella
RISB1672
Spodoptera frugiperda
Order: Lepidoptera
downregulated POX but upregulated trypsin PI in this plant species
0.22%
1.5
Streptococcus
RISB2604
Homona magnanima
Order: Lepidoptera
influence the growth of Bacillus thuringiensis in the larvae
0.02%
1.2
Paraclostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.03%
1.1
Providencia
RISB1001
Anastrepha obliqua
Order: Diptera
improve the sexual competitiveness of males
0.13%
1.0
Providencia
RISB1574
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.13%
0.9
Providencia
RISB0984
Nasonia vitripennis
Order: Hymenoptera
may highly associated with diapause
0.13%
0.8
Nocardioides
RISB1914
Hyles euphorbiae
Order: Lepidoptera
able to degrade alkaloids and/or latex
0.03%
0.8
Corynebacterium
RISB2360
Bombyx mori
Order: Lepidoptera
producing lipase in a gut environment
0.01%
0.8
Chryseobacterium
RISB2092
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.07%
0.6
Priestia
RISB0839
Helicoverpa armigera
Order: Lepidoptera
producing amylase
0.03%
0.4
Chryseobacterium
RISB1874
Aedes aegypti
Order: Diptera
gut microbiome
0.07%
0.4
Peribacillus
RISB1877
Aedes aegypti
Order: Diptera
gut microbiome
0.01%
0.3
Achromobacter
RISB1869
Aedes aegypti
Order: Diptera
gut microbiome
0.00%
0.3
Neisseria
RISB0512
Plutella xylostella
Order: Lepidoptera
None
0.14%
0.1
Chryseobacterium
RISB0015
Aedes aegypti
Order: Diptera
None
0.07%
0.1
Helicobacter
RISB0662
Melanaphis bambusae
Order: Hemiptera
None
0.06%
0.1
Cupriavidus
RISB0694
Alydus tomentosus
Order: Hemiptera
None
0.02%
0.0
Halomonas
RISB1374
Bemisia tabaci
Order: Hemiptera
None
0.01%
0.0
Legionella
RISB1687
Polyplax serrata
Order: Phthiraptera
None
0.01%
0.0
Vagococcus
RISB0042
Aldrichina grahami
Order: Diptera
None
0.01%
0.0
Achromobacter
RISB0383
Aphis gossypii
Order: Hemiptera
None
0.00%
0.0
Candidatus Phytoplasma
RISB1620
Cacopsylla pyricola
Order: Hemiptera
None
0.00%
0.0

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