SRR21195513 - Aedes albopictus

Basic Information

Run: SRR21195513

Assay Type: WGS

Bioproject: PRJNA873190

Biosample: SAMN30491027

Bytes: 28221782

Center Name: PEST CONTROL DEPARTMENT

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Library Selection: PCR

Platform: ILLUMINA

Geographic Information

Country: China

Continent: Asia

Location Name: China:Beijing

Latitude/Longitude: 39.54 N 116.25 E

Sample Information

Host: Aedes albopictus

Isolation: Sequence of the internal microbiota in Aedes albopictus after exposure to cis-permethrin

Biosample Model: Metagenome or environmental

Collection Date: 2022-05-18

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Wolbachia pipientis Species-level Match Host Order Match Host Species Match	RISB2617	Aedes albopictus Order: Diptera	induces cytoplasmic incompatibility	2.06%	37.8
Wolbachia pipientis Species-level Match Host Order Match Host Species Match	RISB1965	Aedes albopictus Order: Diptera	None	2.06%	37.1
Wolbachia pipientis Species-level Match Host Order Match	RISB0766	Aedes fluviatilis Order: Diptera	The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.	2.06%	22.1
Pseudomonas Host Order Match	RISB0425	Anopheles sinensis Order: Diptera	Pseudomonas is the most prevalent microbiota in the Plasmodium-negative groups and protects mosquitoes from the invasion of malaria parasites.A low proportion of the Psuedomonas population of microbiome profiles in the hyperendemic areas, indicating that there might be some factors such as malaria parasites to disturb the balance of microbiota	6.34%	21.3
Pseudomonas Host Order Match	RISB2061	Scaptomyza nigrita Order: Diptera	increased S. nigrita herbivory in bittercress，adult S. nigrita feeding was promoted by a P. fluorescens group strain, while larval feeding was promoted by a P. syringae group strain	6.34%	20.0
Escherichia coli Species-level Match Host Order Match	RISB1769	Calliphoridae Order: Diptera	None	4.79%	19.8
Pseudomonas Host Order Match	RISB1512	Delia lupini Order: Diptera	Antibiotic-treated larvae suffered growth retardation on a diet containing plant extract or swainsonine. Gut bacteria showed toxin-degradation activities in vitro	6.34%	19.6
Brevundimonas sp. M20 Species-level Match Host Order Match	RISB1703	Phlebotomus papatasi Order: Diptera	None	0.96%	16.0
Acetobacter Host Order Match	RISB1865	Drosophila melanogaster Order: Diptera	The bacterial cells may thus be able to ameliorate the pH of the acidic region, by the release of weak bases.Additionally, the bacteria have a complex relationship with physiological processes which may affect ionic homeostasis in the gut, such as nutrition and immune function	0.50%	15.5
Brevundimonas sp. Bb-A Species-level Match Host Order Match	RISB1703	Phlebotomus papatasi Order: Diptera	None	0.41%	15.4
Asaia Host Order Match	RISB0854	Anopheles stephensi Order: Diptera	Two complete operons encoding cytochrome bo3-type ubiquinol terminal oxidases (cyoABCD-1 and cyoABCD-2) were found in most Asaia genomes, possibly offering alternative terminal oxidases and allowing the flexible transition of respiratory pathways. Genes involved in the production of 2,3-butandiol and inositol have been found in Asaia sp. W12, possibly contributing to biofilm formation and stress tolerance.	0.19%	15.2
Enterobacter hormaechei Species-level Match Host Order Match	RISB1331	Zeugodacus cucurbitae Order: Diptera	None	0.15%	15.2
Escherichia coli Species-level Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	4.79%	14.1
Acetobacter Host Order Match	RISB0961	Drosophila melanogaster Order: Diptera	The exist of Acetobacter had a balancing effect on food ingestion when carbohydrate levels were high in the warmer months, stabilizing fitness components of flies across the year.	0.50%	14.1
Citrobacter Host Order Match	RISB1503	Bactrocera dorsalis Order: Diptera	Pesticide-degrading bacteria were frequently detected from pesticide-resistant insects. Susceptible insects became resistant after inoculation of the pesticide-degrading symbiont	0.29%	13.9
Citrobacter Host Order Match	RISB0192	Hermetia illucens Order: Diptera	can directly promote the expression of two gene families related to intestinal protein metabolism: Hitryp serine protease trypsin family and Himtp metallopeptidase family	0.29%	13.7
Asaia Host Order Match	RISB0014	Aedes aegypti Order: Diptera	The bacterium Asaia is considered a highly promising candidate for arboviral control in Aedes mosquitoes.Asaia could play a role in inhibiting CHIKV within Ae. aegypti.	0.19%	13.6
Asaia Host Order Match	RISB2533	Anopheles stephensi Order: Diptera	Asaia sp. strain effectively lodged in the female gut and salivary glands, sites that are crucial for Plasmodium sp. development and transmission	0.19%	13.1
Citrobacter Host Order Match	RISB1221	Delia antiqua Order: Diptera	six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids	0.29%	13.0
Acetobacter Host Order Match	RISB0184	Drosophila melanogaster Order: Diptera	enhancing the brain levels of tyrosine decarboxylase 2 (Tdc2), which is an enzyme that synthesizes octopamine (OA)	0.50%	12.8
Escherichia coli Species-level Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	4.79%	12.5
Methylobacterium sp. FF17 Species-level Match	RISB2053	Atractomorpha sinensis Order: Orthoptera	associated with cellulolytic enzymes	0.61%	6.3
Methylovirgula	RISB0137	Coccinella septempunctata Order: Coleoptera	Methylovirgula is ubiquitous in soil and has been found in many soil samples as a major species producing carbon activity, scholars have found that the microorganism has the highest content in mixed peat swamp forest systems and has the effect of harnessing and reducing methane	0.94%	5.9
Cupriavidus pauculus Species-level Match	RISB0694	Alydus tomentosus Order: Hemiptera	None	0.52%	5.5
Novosphingobium	RISB1837	Dendroctonus valens Order: Coleoptera	It can trongly degrade naringenin, and pinitol, the main soluble carbohydrate of P. tabuliformis, is retained in L. procerum-infected phloem and facilitate naringenin biodegradation by the microbiotas.	0.27%	4.3
Pseudonocardia	RISB0947	Acromyrmex Order: Hymenoptera	Pseudonocardia in the Acromyrmex leaf-cutter ants as a protective partner against the entomopathogenic fungus Metarhizium	0.79%	3.2
Sphingomonas	RISB0420	Aphis gossypii Order: Hemiptera	Sphingomonas could mediate A. gossypii resistance to imidacloprid by hydroxylation and nitroreduction	0.91%	2.9
Pseudonocardia	RISB1218	Mycocepurus smithii Order: Hymenoptera	produce secondary metabolites with antibiotic activity that protects the fungus garden against pathogens	0.79%	2.9
Sphingomonas	RISB1307	Aphis gossypii Order: Hemiptera	have been previously described in associations with phloem-feeding insects, in low abundances	0.91%	2.8
Sphingomonas	RISB0134	Spodoptera frugiperda Order: Lepidoptera	provide a protective effect to against chlorantraniliprole stress to S. frugiperda	0.91%	2.6
Nocardioides	RISB1914	Hyles euphorbiae Order: Lepidoptera	able to degrade alkaloids and/or latex	0.36%	1.1
Paraburkholderia	RISB0125	Physopelta gutta Order: Hemiptera	None	0.32%	0.3
Acidobacterium	RISB1136	Coptotermes Order: Blattodea	None	0.09%	0.1