SRR21195504 - Aedes albopictus

Basic Information

Run: SRR21195504

Assay Type: WGS

Bioproject: PRJNA873190

Biosample: SAMN30491035

Bytes: 36557013

Center Name: PEST CONTROL DEPARTMENT

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Library Selection: PCR

Platform: ILLUMINA

Quality Control Information

Filter Percentage: -

QC Average Length: -

Retained Reads: -

Geographic Information

Country: China

Continent: Asia

Location Name: China:Beijing

Latitude/Longitude: 39.54 N 116.25 E

Sample Information

Host: Aedes albopictus

Isolation: Sequence of the internal microbiota in Aedes albopictus after exposure to cis-permethrin

Biosample Model: Metagenome or environmental

Collection Date: 2022-05-18

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Wolbachia pipientis Species-level Match Host Order Match Host Species Match	RISB2617	Aedes albopictus Order: Diptera	induces cytoplasmic incompatibility	5.05%	40.8
Wolbachia pipientis Species-level Match Host Order Match Host Species Match	RISB1965	Aedes albopictus Order: Diptera	None	5.05%	40.1
Escherichia coli Species-level Match Host Order Match	RISB1769	Calliphoridae Order: Diptera	None	11.38%	26.4
Wolbachia pipientis Species-level Match Host Order Match	RISB0766	Aedes fluviatilis Order: Diptera	The presence of Wolbachia pipientis improves energy performance in A. fluviatilis cells; it affects the regulation of key energy sources such as lipids, proteins, and carbohydrates, making the distribution of actin more peripheral and with extensions that come into contact with neighboring cells.	5.05%	25.1
Escherichia coli Species-level Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	11.38%	20.7
Escherichia coli Species-level Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	11.38%	19.1
Enterobacter ludwigii Species-level Match Host Order Match	RISB1223	Delia antiqua Order: Diptera	six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids	0.11%	17.8
Brevundimonas sp. M20 Species-level Match Host Order Match	RISB1703	Phlebotomus papatasi Order: Diptera	None	1.94%	16.9
Enterobacter ludwigii Species-level Match Host Order Match	RISB1397	Delia antiqua Order: Diptera	suppressed Beauveria bassiana conidia germination and hyphal growth	0.11%	16.5
Asaia Host Order Match	RISB0854	Anopheles stephensi Order: Diptera	Two complete operons encoding cytochrome bo3-type ubiquinol terminal oxidases (cyoABCD-1 and cyoABCD-2) were found in most Asaia genomes, possibly offering alternative terminal oxidases and allowing the flexible transition of respiratory pathways. Genes involved in the production of 2,3-butandiol and inositol have been found in Asaia sp. W12, possibly contributing to biofilm formation and stress tolerance.	0.72%	15.7
Brevundimonas sp. Bb-A Species-level Match Host Order Match	RISB1703	Phlebotomus papatasi Order: Diptera	None	0.54%	15.5
Asaia Host Order Match	RISB0014	Aedes aegypti Order: Diptera	The bacterium Asaia is considered a highly promising candidate for arboviral control in Aedes mosquitoes.Asaia could play a role in inhibiting CHIKV within Ae. aegypti.	0.72%	14.1
Citrobacter Host Order Match	RISB1503	Bactrocera dorsalis Order: Diptera	Pesticide-degrading bacteria were frequently detected from pesticide-resistant insects. Susceptible insects became resistant after inoculation of the pesticide-degrading symbiont	0.35%	13.9
Citrobacter Host Order Match	RISB0192	Hermetia illucens Order: Diptera	can directly promote the expression of two gene families related to intestinal protein metabolism: Hitryp serine protease trypsin family and Himtp metallopeptidase family	0.35%	13.8
Asaia Host Order Match	RISB2533	Anopheles stephensi Order: Diptera	Asaia sp. strain effectively lodged in the female gut and salivary glands, sites that are crucial for Plasmodium sp. development and transmission	0.72%	13.6
Rhodococcus Host Order Match	RISB0775	Delia antiqua Order: Diptera	showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.31%	13.6
Citrobacter Host Order Match	RISB1221	Delia antiqua Order: Diptera	six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids	0.35%	13.1
Chryseobacterium Host Order Match	RISB2092	Aedes aegypti Order: Diptera	axenic larvae cannot develop	0.29%	10.9
Chryseobacterium Host Order Match	RISB1874	Aedes aegypti Order: Diptera	gut microbiome	0.29%	10.6
Streptomyces Host Order Match	RISB0962	Drosophila melanogaster Order: Diptera	None	0.38%	10.4
Chryseobacterium Host Order Match	RISB0015	Aedes aegypti Order: Diptera	None	0.29%	10.3
Enterobacter ludwigii Species-level Match	RISB1543	Helicoverpa zea Order: Lepidoptera	two immunity-related genes glucose oxidase (GOX) and lysozyme (LYZ) were more highly expressed in both salivary glands and midguts compared with MgCl2 solution-treated caterpillars	0.11%	8.7
Methylovirgula	RISB0137	Coccinella septempunctata Order: Coleoptera	Methylovirgula is ubiquitous in soil and has been found in many soil samples as a major species producing carbon activity, scholars have found that the microorganism has the highest content in mixed peat swamp forest systems and has the effect of harnessing and reducing methane	1.97%	7.0
Sphingomonas sp. CL5.1 Species-level Match	RISB0134	Spodoptera frugiperda Order: Lepidoptera	provide a protective effect to against chlorantraniliprole stress to S. frugiperda	0.22%	6.9
Methylobacterium sp. FF17 Species-level Match	RISB2053	Atractomorpha sinensis Order: Orthoptera	associated with cellulolytic enzymes	1.03%	6.8
Cupriavidus pauculus Species-level Match	RISB0694	Alydus tomentosus Order: Hemiptera	None	0.83%	5.8
Streptomyces	RISB0334	Philanthus triangulum Order: Hymenoptera	S. philanthi protect the offspring from opportunistic pathogens by producing antibiotics ,the beewolf protects S. philanthi from oxidative and nitrosative damage by producing protective enzymes and embalming the symbiont in a secretion containing long-chain hydrocarbons	0.38%	5.4
Streptomyces	RISB2316	Philanthinus quattuordecimpunctatus Order: Hymenoptera	host cultivate the actinomycete in specialized antennal gland reservoirs. Then symbionts are transferred to the larval cocoon, where they provide protection against pathogenic fungi by producing at least nine different antibiotics.	0.38%	5.0
Caballeronia	RISB0399	Riptortus pedestris Order: Hemiptera	in laboratory conditions, C. jiangsuensis significantly enhanced the development, body size, and reproductive potentials of R. pedestris, compared to individuals with no symbiotic bacteria.	0.35%	4.1
Pseudonocardia	RISB0947	Acromyrmex Order: Hymenoptera	Pseudonocardia in the Acromyrmex leaf-cutter ants as a protective partner against the entomopathogenic fungus Metarhizium	0.87%	3.3
Caballeronia	RISB0276	Riptortus pedestris Order: Hemiptera	Gut symbiont resulted in increase in the body size and weight of male adults;increased dispersal capacity of male adults especially for flight	0.35%	3.2
Pseudonocardia	RISB1218	Mycocepurus smithii Order: Hymenoptera	produce secondary metabolites with antibiotic activity that protects the fungus garden against pathogens	0.87%	3.0
Caballeronia	RISB0530	Anasa tristis Order: Hemiptera	the symbiont Caballeronia prevents successful, long-term establishment of phytopathogenic Serratia marcescens in the squash bug	0.35%	2.9
Bacteroides	RISB0256	Leptocybe invasa Order: Hymenoptera	Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa	0.32%	2.6
Bacteroides	RISB0090	Hyphantria cunea Order: Lepidoptera	enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.	0.32%	2.4
Bacteroides	RISB1183	Oryzaephilus surinamensis Order: Coleoptera	supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host	0.32%	2.4
Rhodococcus	RISB0430	Rhodnius prolixus Order: Hemiptera	Rhodnius prolixus harbouring R. rhodnii developed faster, had higher survival, and laid more eggs	0.31%	2.3
Mycobacterium	RISB1156	Nicrophorus concolor Order: Coleoptera	produces Antimicrobial compounds	1.12%	1.8
Rhodococcus	RISB1087	Rhodnius prolixus Order: Hemiptera	supply enzymatic biosynthesis of B-complex vitamins	0.31%	1.3
Paraburkholderia	RISB0125	Physopelta gutta Order: Hemiptera	None	1.31%	1.3
Nocardioides	RISB1914	Hyles euphorbiae Order: Lepidoptera	able to degrade alkaloids and/or latex	0.50%	1.3
Acidobacterium	RISB1136	Coptotermes Order: Blattodea	None	0.18%	0.2