SRR19201379 - Euderia squamosa

Basic Information

Run: SRR19201379

Assay Type: WGS

Bioproject: PRJNA836854

Biosample: SAMN28175368

Bytes: 2515326020

Center Name: JOHANNES GUTENBERG-UNIVERSITY MAINZ

Sequencing Information

Instrument: Illumina HiSeq 3000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: New Zealand

Continent: Oceania

Location Name: New Zealand: Auckland

Latitude/Longitude: -

Sample Information

Host: Euderia squamosa

Isolation: beetle abdomen

Biosample Model: Metagenome or environmental

Collection Date: 2020

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Pseudomonas sp. CIP-10
RISB1622
Dendroctonus valens
Order: Coleoptera
volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae
1.38%
21.2
Pseudomonas sp. CIP-10
RISB2224
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
1.38%
19.7
Lactococcus lactis
RISB0967
Oulema melanopus
Order: Coleoptera
contribute to the decomposition of complex carbohydrates, fatty acids, or polysaccharides in the insect gut. It might also contribute to the improvement of nutrient availability.
0.25%
18.8
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
1.09%
18.8
Sphingobacterium sp. R2
RISB2227
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.11%
18.5
Streptomyces sp. WAC00303
RISB0777
Copris tripartitus
Order: Coleoptera
contribute brood ball hygiene by inhibiting fungal parasites in the environment
1.57%
18.2
Morganella morganii
RISB1867
Costelytra zealandica
Order: Coleoptera
Female beetles were previously shown to use phenol as their sex pheromone produced by symbiotic bacteria in the accessory or colleterial gland
0.17%
18.0
Pseudomonas sp. CIP-10
RISB0815
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-15 oxidation pathway
1.38%
17.8
Enterococcus faecalis
RISB0497
Cryptolestes ferrugineus
Order: Coleoptera
bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.
0.20%
17.8
Bacillus sp. S3
RISB1645
Osphranteria coerulescens
Order: Coleoptera
The isolate has cellulolytic activity and can hydrolyze CMC, avicel, cellulose and sawdust with broad temperature and pH stability
0.08%
17.7
Bacillus sp. Cs-700
RISB1645
Osphranteria coerulescens
Order: Coleoptera
The isolate has cellulolytic activity and can hydrolyze CMC, avicel, cellulose and sawdust with broad temperature and pH stability
0.06%
17.7
Bacillus cereus
RISB1056
Oryctes rhinoceros
Order: Coleoptera
provide symbiotic digestive functions to Oryctes
1.64%
17.6
Enterococcus faecalis
RISB2042
Harpalus pensylvanicus
Order: Coleoptera
E. faecalis facilitate seed consumption by H. pensylvanicus, possibly by contributing digestive enzymes to their host
0.20%
17.5
Streptomyces sp. NBC_00435
RISB0777
Copris tripartitus
Order: Coleoptera
contribute brood ball hygiene by inhibiting fungal parasites in the environment
0.66%
17.2
Streptomyces sp. T12
RISB0777
Copris tripartitus
Order: Coleoptera
contribute brood ball hygiene by inhibiting fungal parasites in the environment
0.62%
17.2
Lactococcus lactis
RISB1430
Rhynchophorus ferrugineus
Order: Coleoptera
promote the development and body mass gain of RPW larvae by improving their nutrition metabolism
0.25%
17.2
Morganella morganii
RISB1548
Costelytra zealandica
Order: Coleoptera
symbionts residing in the colleterial glands produce phenol 1 as the female sex pheromone
0.17%
17.0
Paludibacter propionicigenes
RISB2055
Odontotaenius disjunctus
Order: Coleoptera
microbial fixation of nitrogen that is important for this beetle to subsist on woody biomass
0.11%
17.0
Stenotrophomonas maltophilia
RISB0139
Tenebrio molitor
Order: Coleoptera
correlated with polyvinyl chloride PVC degradation
0.93%
16.9
Morganella morganii
RISB1868
Costelytra zealandica
Order: Coleoptera
produces phenol as the sex pheromone of the host from tyrosine in the colleterial gland
0.17%
16.9
Enterococcus faecalis
RISB0374
Tribolium castaneum
Order: Coleoptera
modulates host phosphine resistance by interfering with the redox system
0.20%
16.6
Paenibacillus sp. HWE-109
RISB0813
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-9 oxidation pathway
0.22%
16.6
Paludibacter propionicigenes
RISB2056
Odontotaenius disjunctus
Order: Coleoptera
plays an important role in nitrogen fixation
0.11%
16.0
Lactococcus lactis
RISB1065
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.25%
15.5
Staphylococcus hominis
RISB1071
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.13%
15.4
Staphylococcus epidermidis
RISB1070
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.09%
15.3
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
5.73%
13.7
Spiroplasma
RISB0343
Harmonia axyridis
Order: Coleoptera
female ladybirds co-infected with Hesperomyces harmoniae and Spiroplasma had a significantly lower fecundity and hatchability compared to females with only one or no symbiont
0.18%
13.7
Klebsiella
RISB1506
Cleonus trivittatus
Order: Coleoptera
Antibiotic-treated larvae suffered growth retardation on a diet containing plant extract or swainsonine. Gut bacteria showed toxin-degradation activities in vitro
0.22%
13.5
Bacteroides
RISB1183
Oryzaephilus surinamensis
Order: Coleoptera
supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host
1.17%
13.2
Vibrio
RISB1810
Monochamus galloprovincialis
Order: Coleoptera
Have the ability for degradation of cellulose, proteins and starch
1.80%
13.1
Proteus
RISB0001
Leptinotarsa decemlineata
Order: Coleoptera
produces toxic hydrogen cyanide (HCN) and a mandelonitrile-producing cyanoglucoside, amygdalin, which protect the insect from predation
0.18%
12.9
Klebsiella
RISB1747
Rhynchophorus ferrugineus
Order: Coleoptera
can degrade plant polysaccharides and confer their host optimal adaptation to its environment by modulating its metabolism
0.22%
12.7
Spiroplasma
RISB1483
Brachinus elongatulus
Order: Coleoptera
may manipulate host reproduction (e.g., cause male-killing) or provide resistance to nematodes and/or parasitoid wasps
0.18%
12.5
Bradyrhizobium
RISB0135
Coccinella septempunctata
Order: Coleoptera
be commonly found in plant roots and they all have nitrogen fixation abilities
0.43%
12.0
Nostoc
RISB0812
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-18 oxidation pathway
0.32%
11.7
Klebsiella
RISB0809
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-17 oxidation pathway
0.22%
11.6
Leuconostoc
RISB0812
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-18 oxidation pathway
0.13%
11.6
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
5.73%
11.4
Buchnera aphidicola
RISB0236
Acyrthosiphon pisum
Order: Hemiptera
Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival
1.20%
11.2
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
5.73%
11.2
Buchnera aphidicola
RISB2485
Macrosiphum euphorbiae
Order: Hemiptera
symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance
1.20%
11.0
Spiroplasma
RISB0250
Tenebrio molitor
Order: Coleoptera
associated with PE biodegradation
0.18%
10.8
Rhodococcus
RISB1157
Tenebrio molitor
Order: Coleoptera
degrading plastics
0.13%
10.5
Paenibacillus polymyxa
RISB2195
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.42%
10.4
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
1.09%
10.4
Buchnera aphidicola
RISB0685
Acyrthosiphon pisum
Order: Hemiptera
It supplies the host with vitamins and essential amino acids, such as arginine and methionine that aphids cannot synthesize or derive insufficiently from their diet, the phloem sap of plants
1.20%
10.0
Stenotrophomonas maltophilia
RISB1122
Bombyx mori
Order: Lepidoptera
facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.
0.93%
9.9
Clostridium sp. DL-VIII
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.15%
9.4
Clostridium sp. BJN0001
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.07%
9.3
Mammaliicoccus sciuri
RISB0075
Bombyx mori
Order: Lepidoptera
could produce a secreted chitinolytic lysozyme (termed Msp1) to damage fungal cell walls,completely inhibit the spore germination of fungal entomopathogens Metarhizium robertsii and Beauveria bassiana
0.15%
9.2
Candidatus Carsonella ruddii
RISB0394
Cacopsylla pyricola
Order: Hemiptera
Carsonella produces most essential amino acids (EAAs) for C. pyricola, Psyllophila complements the genes missing in Carsonella for the tryptophan pathway and synthesizes some vitamins and carotenoids
0.11%
9.1
Staphylococcus xylosus
RISB2497
Anticarsia gemmatalis
Order: Lepidoptera
allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean
0.06%
9.0
Acinetobacter pittii
RISB1977
Blattella germanica
Order: Blattodea
gut microbiota contributes to production of VCAs that act as fecal aggregation agents and that cockroaches discriminate among the complex odors that emanate from a diverse microbial community
0.14%
9.0
Stenotrophomonas maltophilia
RISB1227
Delia antiqua
Order: Diptera
six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids
0.93%
8.6
Paenibacillus sp. HWE-109
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.22%
8.5
Candidatus Portiera aleyrodidarum
RISB1193
Bemisia tabaci
Order: Hemiptera
synthesizing essential amino acid (e.g. tryptophan, leucine and L-Isoleucine), Bemisia tabaci provides vital nutritional support for growth, development and reproduction
0.08%
8.5
Candidatus Portiera aleyrodidarum
RISB2289
Bemisia tabaci
Order: Hemiptera
encoding the capability to synthetize, or participate in the synthesis of, several amino acids and carotenoids,
0.08%
7.3
Apilactobacillus kunkeei
RISB0475
Apis mellifera
Order: Hymenoptera
A. kunkeei alleviated acetamiprid-induced symbiotic microbiota dysregulation and mortality in honeybees
0.09%
7.2
Candidatus Portiera aleyrodidarum
RISB1973
Bemisia tabaci
Order: Hemiptera
a primary symbiont, which compensates for the deficient nutritional composition of its food sources
0.08%
7.1
Escherichia coli
RISB2120
Galleria mellonella
Order: Lepidoptera
mediate trans-generational immune priming
1.09%
6.9
Candidatus Karelsulcia muelleri
RISB1591
Philaenus spumarius
Order: Hemiptera
None
1.45%
6.5
Lactiplantibacillus plantarum
RISB0674
Drosophila melanogaster
Order: Diptera
could effectively inhibit fungal spore germinations
0.23%
6.3
Chryseobacterium sp. MYb264
RISB2092
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.47%
6.0
Providencia alcalifaciens
RISB1168
Bactrocera dorsalis
Order: Diptera
Promote the growth of larvae
0.18%
5.7
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
0.59%
5.6
Lactiplantibacillus plantarum
RISB0608
Drosophila melanogaster
Order: Diptera
None
0.23%
5.2
Candidatus Erwinia haradaeae
RISB1632
Lachninae
Order: Hemiptera
None
0.16%
5.2
Listeria
RISB2308
Drosophila melanogaster
Order: Diptera
L. monocytogenes infection disrupts host energy metabolism by depleting energy stores (triglycerides and glycogen) and reducing metabolic pathway activity (beta-oxidation and glycolysis). The infection affects antioxidant defense by reducing uric acid levels and alters amino acid metabolism. These metabolic changes are accompanied by melanization, potentially linked to decreased tyrosine levels.
0.13%
5.1
Candidatus Carsonella ruddii
RISB0748
Diaphorina citri
Order: Hemiptera
None
0.11%
5.1
Candidatus Annandia adelgestsuga
RISB2207
Adelges tsugae
Order: Hemiptera
None
0.11%
5.1
Lactobacillus
RISB1866
Drosophila melanogaster
Order: Diptera
The bacterial cells may thus be able to ameliorate the pH of the acidic region, by the release of weak bases.Additionally, the bacteria have a complex relationship with physiological processes which may affect ionic homeostasis in the gut, such as nutrition and immune function
0.11%
5.1
Rickettsia bellii
RISB1897
Bemisia tabaci
Order: Hemiptera
None
0.10%
5.1
Candidatus Walczuchella
RISB2075
Llaveia axin axin
Order: Hemiptera
could be supplying most of these precursors for the amino acid biosynthesis as it has the potential to make ribulose-5P from ribose-1P and also PEP and pyruvate from glycolysis. It is also capable of producing homocysteine from homoserine for methionine biosynthesis,
0.09%
5.1
Treponema
RISB2377
termite
Order: Blattodea
when grown together, two termite-gut Treponema species influence each other's gene expression in a far more comprehensive and nuanced manner than might have been predicted based on the results of previous studies on the respective pure cultures
0.08%
5.0
Xanthomonas
RISB0498
Xylocopa appendiculata
Order: Hymenoptera
Xanthomonas strain from Japanese carpenter bee is effective PU-degradable bacterium and is able to use polyacryl-based PU as a nutritional source, as well as other types of PS-PU and PE-PU
1.15%
4.9
Cupriavidus
RISB0694
Alydus tomentosus
Order: Hemiptera
None
3.62%
3.6
Pectobacterium
RISB1889
Pseudococcus longispinus
Order: Hemiptera
a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids
0.17%
3.5
Bacteroides
RISB0256
Leptocybe invasa
Order: Hymenoptera
Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa
1.17%
3.5
Lactobacillus
RISB0292
Lymantria dispar asiatica
Order: Lepidoptera
Beauveria bassiana infection-based assays showed that the mortality of non-axenic L. dispar asiatica larvae was significantly higher than that of axenic larvae at 72 h.
0.11%
3.5
Rhodococcus
RISB0775
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.13%
3.4
Bacteroides
RISB0090
Hyphantria cunea
Order: Lepidoptera
enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.
1.17%
3.3
Yersinia
RISB0492
Cimex hemipterus
Order: Hemiptera
the disruption of the abundant Yersinia possibly could be related to the enhanced susceptibility towards the insecticides
0.83%
3.3
Xanthomonas
RISB0217
Xylocopa appendiculata
Order: Hymenoptera
strains biodegraded polyethylene terephthalate PET powder, broke it into its degradation products
1.15%
3.1
Nocardia
RISB0947
Acromyrmex
Order: Hymenoptera
Pseudonocardia in the Acromyrmex leaf-cutter ants as a protective partner against the entomopathogenic fungus Metarhizium
0.67%
3.1
Lactobacillus
RISB0715
Spodoptera frugiperda
Order: Lepidoptera
Have the function of nutrient absorption, energy metabolism, the plant’s secondary metabolites degradation, insect immunity regulation, and so on
0.11%
3.0
Streptococcus
RISB2625
Galleria mellonella
Order: Lepidoptera
suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme
0.79%
2.8
Shewanella
RISB1924
Anopheles gambiae
Order: Diptera
may be related with mediating adaptation to different ecological niches or in shaping specific adult behaviors including mating
0.24%
2.8
Nocardia
RISB1218
Mycocepurus smithii
Order: Hymenoptera
produce secondary metabolites with antibiotic activity that protects the fungus garden against pathogens
0.67%
2.8
Candidatus Walczuchella
RISB0115
Icerya aegyptiaca
Order: Hemiptera
possessed several genes in essential amino acid biosynthesis and seemed to perform roles in providing nutrients to the host
0.09%
2.6
Streptococcus
RISB2624
Reticulitermes flavipes
Order: Blattodea
can be broken down into substances such as carbon dioxide, ammonia and acetic acid
0.79%
2.4
Proteus
RISB2315
Aedes aegypti
Order: Diptera
upregulates AMP gene expression, resulting in suppression of DENV infection in the mosquito gut epithelium
0.18%
2.3
Rhodococcus
RISB0430
Rhodnius prolixus
Order: Hemiptera
Rhodnius prolixus harbouring R. rhodnii developed faster, had higher survival, and laid more eggs
0.13%
2.1
Flavobacterium
RISB0659
Melanaphis bambusae
Order: Hemiptera
None
2.02%
2.0
Streptococcus
RISB2604
Homona magnanima
Order: Lepidoptera
influence the growth of Bacillus thuringiensis in the larvae
0.79%
2.0
Variovorax
RISB2153
Osmia bicornis
Order: Hymenoptera
may be essential to support Osmia larvae in their nutrient uptake
0.14%
1.4
Candidatus Walczuchella
RISB2074
Llaveia axin axin
Order: Hemiptera
may provide metabolic precursors to the flavobacterial endosymbiont
0.09%
1.4
Paraclostridium
RISB0028
Sesamia inferens
Order: Lepidoptera
degrade Chlorpyrifos and Chlorantraniliprole in vitro
0.21%
1.3
Pectobacterium
RISB0798
Pseudoregma bambucicola
Order: Hemiptera
may help P. bambucicola feed on the stalks of bamboo
0.17%
1.2
Proteus
RISB2460
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.18%
1.2
Yersinia
RISB0407
Anaphes nitens
Order: Hymenoptera
None
0.83%
0.8
Priestia
RISB0839
Helicoverpa armigera
Order: Lepidoptera
producing amylase
0.31%
0.7
Peribacillus
RISB1877
Aedes aegypti
Order: Diptera
gut microbiome
0.24%
0.5
Brevundimonas
RISB1703
Phlebotomus papatasi
Order: Diptera
None
0.51%
0.5
Bombilactobacillus
RISB0617
Spodoptera frugiperda
Order: Lepidoptera
degrade amygdalin
0.07%
0.4
Candidatus Profftia
RISB1664
Adelgidae
Order: Hemiptera
None
0.19%
0.2
Pectobacterium
RISB1772
Muscidae
Order: Diptera
None
0.17%
0.2
Acidobacterium
RISB1136
Coptotermes
Order: Blattodea
None
0.15%
0.2
Variovorax
RISB1712
Phlebotomus papatasi
Order: Diptera
None
0.14%
0.1
Legionella
RISB1687
Polyplax serrata
Order: Phthiraptera
None
0.12%
0.1
Paraburkholderia
RISB0125
Physopelta gutta
Order: Hemiptera
None
0.10%
0.1
Helicobacter
RISB0662
Melanaphis bambusae
Order: Hemiptera
None
0.10%
0.1
Treponema
RISB0169
Reticulitermes flaviceps
Order: Blattodea
None
0.08%
0.1
Neisseria
RISB0512
Plutella xylostella
Order: Lepidoptera
None
0.07%
0.1

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