SRR15912735 - Providencia stuartii

Basic Information

Run: SRR15912735

Assay Type: WGS

Bioproject: PRJNA763809

Biosample: SAMN21450744

Bytes: 5260876

Center Name: HUAZHONG AGRICULTURAL UNIVERSITY

Sequencing Information

Instrument: HiSeq X Ten

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: China

Continent: Asia

Location Name: China: Chenzhou

Latitude/Longitude: -

Sample Information

Host: Providencia stuartii

Isolation: -

Biosample Model: Microbe\, viral or environmental

Collection Date: Sep-24

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Morganella morganii
RISB0772
Delia antiqua
Order: Diptera
showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
72.40%
80.7
Morganella morganii
RISB0008
Phormia regina
Order: Diptera
deterred oviposition by female stable flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria
72.40%
80.4
Morganella morganii
RISB1867
Costelytra zealandica
Order: Coleoptera
Female beetles were previously shown to use phenol as their sex pheromone produced by symbiotic bacteria in the accessory or colleterial gland
72.40%
80.2
Providencia
RISB1001
Anastrepha obliqua
Order: Diptera
improve the sexual competitiveness of males
27.60%
28.5
Providencia
RISB1574
Bactrocera tau
Order: Diptera
could attract male and female B. tau
27.60%
28.3
Providencia
RISB0984
Nasonia vitripennis
Order: Hymenoptera
may highly associated with diapause
27.60%
28.3

Download Files

Taxonomic Analysis Files

Kraken Report

Detailed taxonomic classification

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Krona HTML

Interactive taxonomic visualization

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Bracken Results

Species abundance estimation

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Assembly & Gene Prediction

Assembled Contigs

MEGAHIT assembly results

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Predicted Genes

Gene sequences (FASTA)

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Gene Annotation

GFF format annotation

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Genome Binning

MetaBAT2 Bins

Compressed genome bins

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Bin Information

Quality metrics and statistics

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR15912735
5.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

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