SRR15276531 - Rhodnius prolixus

Basic Information

Run: SRR15276531

Assay Type: WGS

Bioproject: PRJNA744378

Biosample: SAMN20181687

Bytes: 728165620

Center Name: GOETHE UNIVERSITY FRANKFURT AM MAIN/GERMANY

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Quality Control Information

Filter Percentage: -

QC Average Length: -

Retained Reads: -

Geographic Information

Country: Brazil

Continent: South America

Location Name: Brazil: Belo Horizonte

Latitude/Longitude: 19.92097 S 43.95264 W

Sample Information

Host: Rhodnius prolixus

Isolation: -

Biosample Model: MIMS.me,MIGS/MIMS/MIMARKS.host-associated

Collection Date: 2019-02

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Enterococcus faecalis Species-level Match Host Order Match	RISB0336	Riptortus pedestris Order: Hemiptera	can be utilized as a novel probiotic which increase the survival rate of insects	71.03%	87.6
Enterococcus faecalis Species-level Match	RISB0497	Cryptolestes ferrugineus Order: Coleoptera	bacteria can degrade malathion, pirimiphos-methyl, and deltamethrin and utilize these insecticides as the carbon source in vitro.	71.03%	78.6
Enterococcus faecalis Species-level Match	RISB1411	Bactrocera dorsalis Order: Diptera	female Bactrocera dorsalis fed Enterococcus faecalis and Klebsiella oxytoca enriched diets lived longer but had lower fecundity	71.03%	78.6
Buchnera aphidicola Species-level Match Host Order Match	RISB0236	Acyrthosiphon pisum Order: Hemiptera	Buchnera the nutritional endosymbiont of A. pisum is located inside of bacteriocytes and requires aspartate from the aphid host, because it cannot make it de novo. Further Buchnera needs aspartate for the biosynthesis of the essential amino acids lysine and threonine, which the aphid and Buchnera require for survival	0.02%	20.0
Buchnera aphidicola Species-level Match Host Order Match	RISB2485	Macrosiphum euphorbiae Order: Hemiptera	symbiont expression patterns differ between aphid clones with differing levels of virulence, and are influenced by the aphids' host plant. Potentially, symbionts may contribute to differential adaptation of aphids to host plant resistance	0.02%	19.8
Clostridium sp. MB40-C1 Species-level Match Host Order Match	RISB2301	Pyrrhocoris apterus Order: Hemiptera	could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet	0.01%	19.2
Buchnera aphidicola Species-level Match Host Order Match	RISB0685	Acyrthosiphon pisum Order: Hemiptera	It supplies the host with vitamins and essential amino acids, such as arginine and methionine that aphids cannot synthesize or derive insufficiently from their diet, the phloem sap of plants	0.02%	18.8
Burkholderia cepacia Species-level Match Host Order Match	RISB0709	Nilaparvata lugens Order: Hemiptera	BsNLG8 significantly inhibited the growth of phytopathogenic fungi and also demonstrated the ability to produce siderophores, which explains its antagonistic mechanism.	0.02%	18.4
Burkholderia cepacia Species-level Match Host Order Match	RISB0089	Nilaparvata lugens Order: Hemiptera	immune gene Defensin A contribute to the resistance against Nicotine-induced stress in host	0.02%	16.8
Pseudomonas sp. CIP-10 Species-level Match Host Order Match	RISB0700	Nilaparvata lugens Order: Hemiptera	Pseudomonas sp. composition and abundance correlated with BPH survivability	0.07%	16.6
Escherichia coli Species-level Match Host Order Match	RISB0412	Melanaphis sacchari Order: Hemiptera	None	0.04%	15.0
Candidatus Erwinia haradaeae Species-level Match Host Order Match	RISB1632	Lachninae Order: Hemiptera	None	0.04%	15.0
Microbacterium esteraromaticum Species-level Match Host Order Match	RISB0904	Myzus persicae Order: Hemiptera	None	0.01%	15.0
Cupriavidus pauculus Species-level Match Host Order Match	RISB0694	Alydus tomentosus Order: Hemiptera	None	0.01%	15.0
Lactococcus Host Order Match	RISB2305	Pyrrhocoris apterus Order: Hemiptera	could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet	0.02%	14.2
Wolbachia Host Order Match	RISB1444	Laodelphax striatellus Order: Hemiptera	Wolbachia-infected host embryonic development genes revealed Ddx1 mRNAs, which is required for host viability and in the germ line, accumulated in the posterior region of 3-day-old embryos	0.27%	14.0
Wolbachia Host Order Match	RISB1539	Cimex lectularius Order: Hemiptera	wCle provisions the bed bug with B vitamins.It is likely that because of wCle’s nutritional contribution to the bed bug, its titer increases in relation to bed bug growth and development.	0.27%	14.0
Symbiopectobacterium Host Order Match	RISB1889	Pseudococcus longispinus Order: Hemiptera	a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids	0.15%	13.5
Wolbachia Host Order Match	RISB0491	Cimex hemipterus Order: Hemiptera	the disruption of the abundant Wolbachia could be related to the enhanced susceptibility towards the insecticides	0.27%	12.5
Sphingomonas Host Order Match	RISB0420	Aphis gossypii Order: Hemiptera	Sphingomonas could mediate A. gossypii resistance to imidacloprid by hydroxylation and nitroreduction	0.04%	12.1
Sphingomonas Host Order Match	RISB1307	Aphis gossypii Order: Hemiptera	have been previously described in associations with phloem-feeding insects, in low abundances	0.04%	11.9
Lactococcus Host Order Match	RISB0337	Riptortus pedestris Order: Hemiptera	can be utilized as a novel probiotic which increase the survival rate of insects	0.02%	11.6
Arthrobacter Host Order Match	RISB0580	Aleurodicus rugioperculatus Order: Hemiptera	may indirectly affect whitefly oviposition	0.04%	10.9
Curtobacterium Host Order Match	RISB0900	Myzus persicae Order: Hemiptera	None	0.14%	10.1
Micromonospora Host Order Match	RISB2033	Palomena viridissima Order: Hemiptera	None	0.10%	10.1
Listeria monocytogenes Species-level Match	RISB2308	Drosophila melanogaster Order: Diptera	L. monocytogenes infection disrupts host energy metabolism by depleting energy stores (triglycerides and glycogen) and reducing metabolic pathway activity (beta-oxidation and glycolysis). The infection affects antioxidant defense by reducing uric acid levels and alters amino acid metabolism. These metabolic changes are accompanied by melanization, potentially linked to decreased tyrosine levels.	0.09%	10.1
Brevibacterium Host Order Match	RISB0897	Myzus persicae Order: Hemiptera	None	0.08%	10.1
Sphingomonas Host Order Match	RISB0167	Pseudoregma bambucicola Order: Hemiptera	None	0.04%	10.0
Bacillus cereus Species-level Match	RISB2161	Termitidae Order: Blattodea	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.04%	10.0
Bacillus thuringiensis Species-level Match	RISB2177	Armadillidae Order: Isopoda	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.03%	10.0
Cellulosimicrobium sp. JZ28 Species-level Match	RISB2182	Armadillidae Order: Isopoda	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.03%	10.0
Microbacterium oleivorans Species-level Match	RISB2194	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.02%	10.0
Cellulosimicrobium sp. ES-005 Species-level Match	RISB2182	Armadillidae Order: Isopoda	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.01%	10.0
Staphylococcus Host Order Match	RISB0672	Melanaphis bambusae Order: Hemiptera	None	0.01%	10.0
Paraburkholderia Host Order Match	RISB0125	Physopelta gutta Order: Hemiptera	None	0.01%	10.0
Helicobacter Host Order Match	RISB0662	Melanaphis bambusae Order: Hemiptera	None	0.00%	10.0
Pseudomonas sp. CIP-10 Species-level Match	RISB1622	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.07%	9.9
Bacillus thuringiensis Species-level Match	RISB0109	Tuta absoluta Order: Lepidoptera	Individual exposure of B. thuringiensis isolates to P. absoluta revealed high susceptibility of the pest and could potentially be used to develop effective, safe and affordable microbial pesticides for the management of P. absoluta.	0.03%	9.7
Escherichia coli Species-level Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	0.04%	9.4
Stenotrophomonas maltophilia Species-level Match	RISB1122	Bombyx mori Order: Lepidoptera	facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.	0.04%	9.0
Streptomyces sp. WAC00303 Species-level Match	RISB0943	Polybia plebeja Order: Hymenoptera	this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans	0.07%	9.0
Streptomyces sp. T12 Species-level Match	RISB0943	Polybia plebeja Order: Hymenoptera	this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans	0.03%	9.0
Streptomyces sp. NBC_01304 Species-level Match	RISB0943	Polybia plebeja Order: Hymenoptera	this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans	0.02%	9.0
Pseudomonas sp. CIP-10 Species-level Match	RISB2224	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.07%	8.4
Lactobacillus sp. ESL0677 Species-level Match	RISB0292	Lymantria dispar asiatica Order: Lepidoptera	Beauveria bassiana infection-based assays showed that the mortality of non-axenic L. dispar asiatica larvae was significantly higher than that of axenic larvae at 72 h.	0.01%	8.4
Morganella morganii Species-level Match	RISB0772	Delia antiqua Order: Diptera	showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.01%	8.3
Morganella morganii Species-level Match	RISB0008	Phormia regina Order: Diptera	deterred oviposition by female stable flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria	0.01%	8.0
Blattabacterium cuenoti Species-level Match	RISB0133	Panesthiinae Order: Blattodea	enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life	0.02%	8.0
Morganella morganii Species-level Match	RISB1867	Costelytra zealandica Order: Coleoptera	Female beetles were previously shown to use phenol as their sex pheromone produced by symbiotic bacteria in the accessory or colleterial gland	0.01%	7.9
Escherichia coli Species-level Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	0.04%	7.8
Stenotrophomonas maltophilia Species-level Match	RISB1227	Delia antiqua Order: Diptera	six bacteria protect larvae from infection with the entomopathogen Beauveria bassiana through symbiotic bacterium-derived organic acids	0.04%	7.7
Micrococcus sp. 2A Species-level Match	RISB2276	Ostrinia nubilalis Order: Lepidoptera	extreme cellulolytic enzymes, at extreme (pH 12) conditions, exhibited cellulolytic properties	0.02%	6.9
Stenotrophomonas maltophilia Species-level Match	RISB1141	Hermetia illucens Order: Diptera	enhance the insect growth performance when reared on an unbalanced nutritionally poor diet	0.04%	6.8
Corynebacterium variabile Species-level Match	RISB0363	Pagiophloeus tsushimanus Order: Coleoptera	terpenoid-degrading: the highest degradation rates of D-camphor, linalool, and eucalyptol	0.02%	6.8
Microbacterium hominis Species-level Match	RISB1997	Diatraea saccharalis Order: Lepidoptera	possess cellulose degrading activity	0.07%	5.8
Blattabacterium cuenoti Species-level Match	RISB0518	Cryptocercus punctulatus Order: Blattodea	collaborative arginine biosynthesis	0.02%	5.7
Rhodococcus ruber Species-level Match	RISB1157	Tenebrio molitor Order: Coleoptera	degrading plastics	0.30%	5.7
Blattabacterium cuenoti Species-level Match	RISB0093	Blattella germanica Order: Blattodea	obligate endosymbiont	0.02%	5.4
Burkholderia cepacia Species-level Match	RISB2389	Apis mellifera Order: Hymenoptera	None	0.02%	5.0
Lactococcus	RISB0131	Ceratitis capitata Order: Diptera	The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.	0.02%	5.0
Staphylococcus	RISB0945	Callosobruchus maculatus Order: Coleoptera	The strain encodes complete biosynthetic pathways for the production of B vitamins and amino acids, including tyrosine; A carbohydrate-active enzyme search revealed that the genome codes for a number of digestive enzymes, reflecting the nutritional ecology of C. maculatus	0.01%	5.0
Lactobacillus apis Species-level Match	RISB1556	Apis florea Order: Hymenoptera	None	0.01%	5.0
Variovorax sp. 38R Species-level Match	RISB1712	Phlebotomus papatasi Order: Diptera	None	0.01%	5.0
Nocardia	RISB0947	Acromyrmex Order: Hymenoptera	Pseudonocardia in the Acromyrmex leaf-cutter ants as a protective partner against the entomopathogenic fungus Metarhizium	2.32%	4.7
Nocardia	RISB1218	Mycocepurus smithii Order: Hymenoptera	produce secondary metabolites with antibiotic activity that protects the fungus garden against pathogens	2.32%	4.4
Staphylococcus	RISB2497	Anticarsia gemmatalis Order: Lepidoptera	allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean	0.01%	4.0
Xanthomonas	RISB0498	Xylocopa appendiculata Order: Hymenoptera	Xanthomonas strain from Japanese carpenter bee is effective PU-degradable bacterium and is able to use polyacryl-based PU as a nutritional source, as well as other types of PS-PU and PE-PU	0.01%	3.8
Amycolatopsis	RISB0483	Trachymyrmex smithi Order: Hymenoptera	inhibited the growth of Pseudonocardia symbionts under laboratory conditions. The novel analog nocamycin V from the strain was identified as the antibacterial compound	0.36%	3.7
Amycolatopsis	RISB0199	Trachymyrmex Order: Hymenoptera	produce antibiotic EC0-0501 that has strong activity against ant-associated Actinobacteria and may also play a role in bacterial competition in this niche	0.36%	3.4
Arthrobacter	RISB0769	Delia antiqua Order: Diptera	showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.04%	3.3
Leucobacter	RISB0771	Delia antiqua Order: Diptera	showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.03%	3.3
Tsukamurella	RISB1531	Hoplothrips carpathicus Order: Thysanoptera	This genus was identified as dominant in intensively feeding second-stage larvae and suggests a mechanism by which L2 larvae might process cellulose.	0.19%	3.2
Pseudonocardia	RISB0947	Acromyrmex Order: Hymenoptera	Pseudonocardia in the Acromyrmex leaf-cutter ants as a protective partner against the entomopathogenic fungus Metarhizium	0.21%	2.6
Bacteroides	RISB0256	Leptocybe invasa Order: Hymenoptera	Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa	0.01%	2.3
Pseudonocardia	RISB1218	Mycocepurus smithii Order: Hymenoptera	produce secondary metabolites with antibiotic activity that protects the fungus garden against pathogens	0.21%	2.3
Gordonia	RISB1912	Hyles euphorbiae Order: Lepidoptera	able to degrade alkaloids and/or latex	1.42%	2.2
Bacteroides	RISB0090	Hyphantria cunea Order: Lepidoptera	enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.	0.01%	2.1
Blautia	RISB0091	Hyphantria cunea Order: Lepidoptera	enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.	0.01%	2.1
Bacteroides	RISB1183	Oryzaephilus surinamensis Order: Coleoptera	supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host	0.01%	2.1
Arthrobacter	RISB1084	Hermetia illucens Order: Diptera	Arthrobacter AK19 doubled the growth rate of larvae and increased the waste conversion by 25-30%	0.04%	2.0
Xanthomonas	RISB0217	Xylocopa appendiculata Order: Hymenoptera	strains biodegraded polyethylene terephthalate PET powder, broke it into its degradation products	0.01%	2.0
Bradyrhizobium	RISB0135	Coccinella septempunctata Order: Coleoptera	be commonly found in plant roots and they all have nitrogen fixation abilities	0.03%	1.6
Mycobacterium	RISB1156	Nicrophorus concolor Order: Coleoptera	produces Antimicrobial compounds	0.92%	1.6
Vibrio	RISB1810	Monochamus galloprovincialis Order: Coleoptera	Have the ability for degradation of cellulose, proteins and starch	0.02%	1.3
Brevibacterium	RISB0464	Acrida cinerea Order: Orthoptera	correlated with the hemicellulose digestibility	0.08%	1.0
Nocardioides	RISB1914	Hyles euphorbiae Order: Lepidoptera	able to degrade alkaloids and/or latex	0.22%	1.0
Clavibacter	RISB0465	Trilophidia annulata Order: Orthoptera	correlated with the hemicellulose digestibility	0.03%	1.0
Curtobacterium	RISB1910	Hyles euphorbiae Order: Lepidoptera	able to degrade alkaloids and/or latex	0.14%	0.9
Brevibacterium	RISB2359	Bombyx mori Order: Lepidoptera	producing lipase in a gut environment	0.08%	0.8
Priestia	RISB0839	Helicoverpa armigera Order: Lepidoptera	producing amylase	0.01%	0.4
Leucobacter	RISB1876	Aedes aegypti Order: Diptera	gut microbiome	0.03%	0.3
Micromonospora	RISB2034	Harpalus sinicus Order: Coleoptera	None	0.10%	0.1
Propionibacterium	RISB0490	Ceratitis capitata Order: Diptera	None	0.01%	0.0
Kaistia	RISB0829	Spodoptera frugiperda Order: Lepidoptera	None	0.01%	0.0
Neisseria	RISB0512	Plutella xylostella Order: Lepidoptera	None	0.01%	0.0