SRR14139157 - Protaetia brevitarsis

Basic Information

Run: SRR14139157

Assay Type: RNA-Seq

Bioproject: PRJNA719476

Biosample: SAMN18607600

Bytes: 7784180440

Center Name: INSTITUTE OF PLANT PROTECTION, CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: China

Continent: Asia

Location Name: China: Cangzhou

Latitude/Longitude: -

Sample Information

Host: Protaetia brevitarsis

Isolation: midgut

Biosample Model: Invertebrate

Collection Date: 2014/10/30

Taxonomic Classification

Taxonomic visualization Not Available

The interactive Krona chart for this metagenome is currently being processed or unavailable for metagenome quality reason. Please check back later or download the raw files below.

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential

Download Files

Taxonomic Analysis Files

Kraken Report

Detailed taxonomic classification

Krona HTML

Interactive taxonomic visualization

Bracken Results

Species abundance estimation

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Assembly & Gene Prediction

Assembled Contigs

MEGAHIT assembly results

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Predicted Genes

Gene sequences (FASTA)

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Gene Annotation

GFF format annotation

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Genome Binning

MetaBAT2 Bins

Compressed genome bins

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Bin Information

Quality metrics and statistics

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR14139157

7.2 GB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

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