SRR12668542 - Tribolium castaneum

Basic Information

Run: SRR12668542

Assay Type: WGS

Bioproject: PRJNA663749

Biosample: SAMN16178269

Bytes: 2941803

Center Name: NATIONAL CENTER FOR BIOLOGICAL SCIENCES

Instrument: Illumina MiSeq

Library Layout: PAIRED

Library Selection: PCR

Platform: ILLUMINA

Country: India

Continent: Asia

Location Name: India:Bangalore

Latitude/Longitude: 12.9716 N 77.5946 E

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2017-08-12

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Xanthomonas	RISB0498	Xylocopa appendiculata Order: Hymenoptera	Xanthomonas strain from Japanese carpenter bee is effective PU-degradable bacterium and is able to use polyacryl-based PU as a nutritional source, as well as other types of PS-PU and PE-PU	38.88%	42.6
Xanthomonas	RISB0217	Xylocopa appendiculata Order: Hymenoptera	strains biodegraded polyethylene terephthalate PET powder, broke it into its degradation products	38.88%	40.8